jgi.p|Nanoce1779_2|672307, mRNA_6864 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|672307
Unique Name	mRNA_6864
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1208
Alignment location	scaffold_17:291513..293350 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	672393
Track	FilteredModels2
ProteinId	672307

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:291513..293350 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672307	gene_6864	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672307	mRNA_6864-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6864	CDS_6864	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:291513..293350+
coding sequence from alignment at scaffold_17:291513..293350+

mRNA sequence

>mRNA_6864 ID=mRNA_6864|Name=jgi.p|Nanoce1779_2|672307|organism=Nannochloropsis oceanica|type=mRNA|length=1208bp
ATGGGTCCTGGCCCCCCACGCCATTGCATCTGGTACGAACTCCCCACCAC
CAGCCACAAGCACGCCACGGTGTTGAGAGATATCCAAGGGTTTGCCGCAG
AGTTCTCGTGCAGCAGCACGTACCGGACCATGGCCAGATCTCTTATGGTG
GCCGTCAAGGCCCTAAATCAGGCGCAAATTACCCTCAGAACCGTCTCCTG
GCTTAGCGCCCTTTTTGGTGACAGTGGCTCGTCCCAGCCTAAGGTGCATC
GCCCCTTTGGTGTCCACGAAAAGGCACACTTGAAGTTAGCTACGCGCAAA
AAAGACAAAGTCATGCAAACCAACCCCGGAGCACGCGTTGAGCCCGAATT
TCTCCCTGAAATCGAATCACATAGGTTGGTAGAGGAAGCGCTCGACGTAA
TTAAGAAGTATGGGATTTCGCATGTGAGTGAGGAGCAACGGATTGAGATG
GCGCATCAGCTGAAGCATTTTCCTTTGCCGAAGGCTGACTTGAAGGAATT
GGTCAATATGCAGCGTGTCACGGGGCGCTTCGAAGACGCCGCTCAAACCC
TGGCTCCTTGGGGGTACGGAGACGACTTCAACATTGAACAGGTTCCTCCC
GCGCTACGCAGCATGCTTGAGCGCATTCAAGCCTCACCGCATTTTTGTTT
GGGAAAGCCCCGGGATATTACCTTGAACCATCGCGAGAATTATTTCTATC
GTCTAGACCCTCATATTGACCCTGTCGATGATGGGGGAAATGTCTTCATC
TTGGGGCTGTTGTCAGGGACGGTCTTGACCTTATCGCCGACCAGTAGAAC
AATGCACCCGGATCAGCACAAAGCGATGGACCCAAGAAGAGTGGCTGAAG
TGTCGTGGTTACCTGGGAAGGATATTGATGTTGACTTGCCTGCACGGACC
TTGTTGCATTTGAGTGGTGATGCGCGATATAGCTGGTGTCATGGCATACG
TCTAGGGGTGACCCATCCGCAGATTGAGGATTACTATTTGGGGGCGGAAT
TACCAGAAGAGGCAAGAGTGCTGGGGGGAGAGCAGAAGGGAGAAGTCCCT
TTGTGGGATTGGTGGGGGAACATGAAGAATTTGAGACGACGGGGCCCGGA
ACGACTGAGCATTATTTTTGCCTTCTCGGATCCGGAATAGAATTGAGAGG
GCAGCGGACTCGGTGTGTGCACTCGTAAGTGTAGAAAGAAAGTGAAAAAC
ATTGAGAG

protein sequence of jgi.p|Nanoce1779_2|672307

>mRNA_6864-protein ID=mRNA_6864-protein|Name=jgi.p|Nanoce1779_2|672307|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MGPGPPRHCIWYELPTTSHKHATVLRDIQGFAAEFSCSSTYRTMARSLMV
AVKALNQAQITLRTVSWLSALFGDSGSSQPKVHRPFGVHEKAHLKLATRK
KDKVMQTNPGARVEPEFLPEIESHRLVEEALDVIKKYGISHVSEEQRIEM
AHQLKHFPLPKADLKELVNMQRVTGRFEDAAQTLAPWGYGDDFNIEQVPP
ALRSMLERIQASPHFCLGKPRDITLNHRENYFYRLDPHIDPVDDGGNVFI
LGLLSGTVLTLSPTSRTMHPDQHKAMDPRRVAEVSWLPGKDIDVDLPART
LLHLSGDARYSWCHGIRLGVTHPQIEDYYLGAELPEEARVLGGEQKGEVP
LWDWWGNMKNLRRRGPERLSIIFAFSDPE*

mRNA from alignment at scaffold_17:291513..293350+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6864 ID=mRNA_6864|Name=jgi.p|Nanoce1779_2|672307|organism=Nannochloropsis oceanica|type=mRNA|length=1838bp|location=Sequence derived from alignment at scaffold_17:291513..293350+ (Nannochloropsis oceanica)
ATGGGTCCTGGGTATGACCCTGCCCCCCGAGGTGCATGCATCGAAGTCGA
TTTTTTGGCTCGGACCCAGTGTCCTCGCATCGGCGTAGCTTCGTTTTTCC
GTTCCAATTCAATACGGGGGGATTTTTGATTTGTGTATGCTCAGGGTGTT
TAAAGGGTTTTTGCCAAGGCAGGCAGTGCTTTGCTTGCTGTGGGTGCCGC
GACGCCAGTGTTGAAGAGATGGCGACACCACTTGTGATGATGGATGCGCT
AGAGAAGCGGATATACCCCGTTATTCGAGAAGCAACAACCAGGGACCACG
TGCCTTACAATGCCCTTCTTGCTCATCACAATGTTCCCAAACACACATTC
CACAGCCCCCCACGCCATTGCATCTGGTACGAACTCCCCACCACCAGCCA
CAAGCACGCCACGGTGTTGAGAGATATCCAAGGGTTTGCCGCAGAGTTCT
CGTGCAGCAGCACGTACCGGACCATGGCCAGATCTCTTATGGTGGCCGTC
AAGGCCCTAAATCAGGCGCAAATTACCCTCAGAACCGTGAGTACTCATGC
GGCTTCAGTGTCTACAAACACCGTTGCCGGCAAAACCAGAGTACTTAGCA
GCACTGCGACCCCCACTCCTGTTTGCGACACAACTACTACTCCTTCCTCC
CCAAAAAAGGTCTCCTGGCTTAGCGCCCTTTTTGGTGACAGTGGCTCGTC
CCAGCCTAAGGTGCATCGCCCCTTTGGTGTCCACGAAAAGGCACACTTGA
AGTTAGCTACGCGCAAAAAAGACAAAGTCATGCAAACCAACCCCGGAGCA
CGCGTTGAGCCCGAATTTCTCCCTGAAATCGAATCACATAGGTTGGTAGA
GGAAGCGCTCGACGTAATTAAGAAGTATGGGATTTCGCATGTGAGTGAGG
AGCAACGGATTGAGATGGCGCATCAGCTGAAGCATTTTCCTTTGCCGAAG
GCTGACTTGAAGGAATTGGTCAATATGCAGCGTGTCACGGGGGTAAGTGC
TGCATACGAGGTGGATAGAAAGATAGAAAACACGAAAAAGGGAGAGTGTG
TGTGGCTAGAGGCGCTATGGATAGGATAGCAACGGCTTGATTCAGGACTC
AACTTCTCAATTTTCTCCTCCCTTCCTTTTCACCCTCCACTTTCCTCCCT
CCCAGCGCTTCGAAGACGCCGCTCAAACCCTGGCTCCTTGGGGGTACGGA
GACGACTTCAACATTGAACAGGTTCCTCCCGCGCTACGCAGCATGCTTGA
GCGCATTCAAGCCTCACCGCATTTTTGTTTGGGAAAGCCCCGGGATATTA
CCTTGAACCATCGCGAGAATTATTTCTATCGTCTAGACCCTCATATTGAC
CCTGTCGATGATGGGGGAAATGTCTTCATCTTGGGGCTGTTGTCAGGGAC
GGTCTTGACCTTATCGCCGACCAGTAGAACAATGCACCCGGATCAGCACA
AAGCGATGGACCCAAGAAGAGTGGCTGAAGTGTCGTGGTTACCTGGGAAG
GATATTGATGTTGACTTGCCTGCACGGACCTTGTTGCATTTGAGTGGTGA
TGCGCGATATAGCTGGTGTCATGGCATACGTCTAGGGGTGACCCATCCGC
AGATTGAGGATTACTATTTGGGGGCGGAATTACCAGAAGAGGCAAGAGTG
CTGGGGGGAGAGCAGAAGGGAGAAGTCCCTTTGTGGGATTGGTGGGGGAA
CATGAAGAATTTGAGACGACGGGGCCCGGAACGACTGAGCATTATTTTTG
CCTTCTCGGATCCGGAATAGAATTGAGAGGGCAGCGGACTCGGTGTGTGC
ACTCGTAAGTGTAGAAAGAAAGTGAAAAACATTGAGAG

Coding sequence (CDS) from alignment at scaffold_17:291513..293350+

>mRNA_6864 ID=mRNA_6864|Name=jgi.p|Nanoce1779_2|672307|organism=Nannochloropsis oceanica|type=CDS|length=4560bp|location=Sequence derived from alignment at scaffold_17:291513..293350+ (Nannochloropsis oceanica)
ATGGGTCCTGGCCCCCCACGCCATTGCATCTGGTACGAACTCCCCACCAC
CAGCCACAAGCACGCCACGGTGTTGAGAGATATCCAAGGGTTTGCCGCAG
AGTTCTCGTGCAGCAGCACGTACCGGACCATGGCCAGATCTCTTATGGTG
GCCGTCAAGGCCCTAAATCAGGCGCAAATTACCCTCAGAACCGTCTCCTG
GCTTAGCGCCCTTTTTGGTGACAGTGGCTCGTCCCAGCCTAAGGTGCATC
GCCCCTTTGGTGTCCACGAAAAGGCACACTTGAAGTTAGCTACGCGCAAA
AAAGACAAAGTCATGCAAACCAACCCCGGAGCACGCGTTGAGCCCGAATT
TCTCCCTGAAATCGAATCACATAGGTTGGTAGAGGAAGCGCTCGACGTAA
TTAAGAAGTATGGGATTTCGCATGTGAGTGAGGAGCAACGGATTGAGATG
GCGCATCAGCTGAAGCATTTTCCTTTGCCGAAGGCTGACTTGAAGGAATT
GGTCAATATGCAGCGTGTCACGGGGCGCTTCGAAGACGCCGCTCAAACCC
TGGCTCCTTGGGGGTACGGAGACGACTTCAACATTGAACAGGTTCCTCCC
GCGCTACGCAGCATGCTTGAGCGCATTCAAGCCTCACCGCATTTTTGTTT
GGGAAAGCCCCGGGATATTACCTTGAACCATCGCGAGAATTATTTCTATC
GTCTAGACCCTCATATTGACCCTGTCGATGATGGGGGAAATGTCTTCATC
TTGGGGCTGTTGTCAGGGACGGTCTTGACCTTATCGCCGACCAGTAGAAC
AATGCACCCGGATCAGCACAAAGCGATGGACCCAAGAAGAGTGGCTGAAG
TGTCGTGGTTACCTGGGAAGGATATTGATGTTGACTTGCCTGCACGGACC
TTGTTGCATTTGAGTGGTGATGCGCGATATAGCTGGTGTCATGGCATACG
TCTAGGGGTGACCCATCCGCAGATTGAGGATTACTATTTGGGGGCGGAAT
TACCAGAAGAGGCAAGAGTGCTGGGGGGAGAGCAGAAGGGAGAAGTCCCT
TTGTGGGATTGGTGGGGGAACATGAAGAATTTGAGACGACGGGGCCCGGA
ACGACTGAGCATTATTTTTGCCTTCTCGGATCCGGAATAGATGGGTCCTG
GCCCCCCACGCCATTGCATCTGGTACGAACTCCCCACCACCAGCCACAAG
CACGCCACGGTGTTGAGAGATATCCAAGGGTTTGCCGCAGAGTTCTCGTG
CAGCAGCACGTACCGGACCATGGCCAGATCTCTTATGGTGGCCGTCAAGG
CCCTAAATCAGGCGCAAATTACCCTCAGAACCGTCTCCTGGCTTAGCGCC
CTTTTTGGTGACAGTGGCTCGTCCCAGCCTAAGGTGCATCGCCCCTTTGG
TGTCCACGAAAAGGCACACTTGAAGTTAGCTACGCGCAAAAAAGACAAAG
TCATGCAAACCAACCCCGGAGCACGCGTTGAGCCCGAATTTCTCCCTGAA
ATCGAATCACATAGGTTGGTAGAGGAAGCGCTCGACGTAATTAAGAAGTA
TGGGATTTCGCATGTGAGTGAGGAGCAACGGATTGAGATGGCGCATCAGC
TGAAGCATTTTCCTTTGCCGAAGGCTGACTTGAAGGAATTGGTCAATATG
CAGCGTGTCACGGGGCGCTTCGAAGACGCCGCTCAAACCCTGGCTCCTTG
GGGGTACGGAGACGACTTCAACATTGAACAGGTTCCTCCCGCGCTACGCA
GCATGCTTGAGCGCATTCAAGCCTCACCGCATTTTTGTTTGGGAAAGCCC
CGGGATATTACCTTGAACCATCGCGAGAATTATTTCTATCGTCTAGACCC
TCATATTGACCCTGTCGATGATGGGGGAAATGTCTTCATCTTGGGGCTGT
TGTCAGGGACGGTCTTGACCTTATCGCCGACCAGTAGAACAATGCACCCG
GATCAGCACAAAGCGATGGACCCAAGAAGAGTGGCTGAAGTGTCGTGGTT
ACCTGGGAAGGATATTGATGTTGACTTGCCTGCACGGACCTTGTTGCATT
TGAGTGGTGATGCGCGATATAGCTGGTGTCATGGCATACGTCTAGGGGTG
ACCCATCCGCAGATTGAGGATTACTATTTGGGGGCGGAATTACCAGAAGA
GGCAAGAGTGCTGGGGGGAGAGCAGAAGGGAGAAGTCCCTTTGTGGGATT
GGTGGGGGAACATGAAGAATTTGAGACGACGGGGCCCGGAACGACTGAGC
ATTATTTTTGCCTTCTCGGATCCGGAATAGATGGGTCCTGGCCCCCCACG
CCATTGCATCTGGTACGAACTCCCCACCACCAGCCACAAGCACGCCACGG
TGTTGAGAGATATCCAAGGGTTTGCCGCAGAGTTCTCGTGCAGCAGCACG
TACCGGACCATGGCCAGATCTCTTATGGTGGCCGTCAAGGCCCTAAATCA
GGCGCAAATTACCCTCAGAACCGTCTCCTGGCTTAGCGCCCTTTTTGGTG
ACAGTGGCTCGTCCCAGCCTAAGGTGCATCGCCCCTTTGGTGTCCACGAA
AAGGCACACTTGAAGTTAGCTACGCGCAAAAAAGACAAAGTCATGCAAAC
CAACCCCGGAGCACGCGTTGAGCCCGAATTTCTCCCTGAAATCGAATCAC
ATAGGTTGGTAGAGGAAGCGCTCGACGTAATTAAGAAGTATGGGATTTCG
CATGTGAGTGAGGAGCAACGGATTGAGATGGCGCATCAGCTGAAGCATTT
TCCTTTGCCGAAGGCTGACTTGAAGGAATTGGTCAATATGCAGCGTGTCA
CGGGGCGCTTCGAAGACGCCGCTCAAACCCTGGCTCCTTGGGGGTACGGA
GACGACTTCAACATTGAACAGGTTCCTCCCGCGCTACGCAGCATGCTTGA
GCGCATTCAAGCCTCACCGCATTTTTGTTTGGGAAAGCCCCGGGATATTA
CCTTGAACCATCGCGAGAATTATTTCTATCGTCTAGACCCTCATATTGAC
CCTGTCGATGATGGGGGAAATGTCTTCATCTTGGGGCTGTTGTCAGGGAC
GGTCTTGACCTTATCGCCGACCAGTAGAACAATGCACCCGGATCAGCACA
AAGCGATGGACCCAAGAAGAGTGGCTGAAGTGTCGTGGTTACCTGGGAAG
GATATTGATGTTGACTTGCCTGCACGGACCTTGTTGCATTTGAGTGGTGA
TGCGCGATATAGCTGGTGTCATGGCATACGTCTAGGGGTGACCCATCCGC
AGATTGAGGATTACTATTTGGGGGCGGAATTACCAGAAGAGGCAAGAGTG
CTGGGGGGAGAGCAGAAGGGAGAAGTCCCTTTGTGGGATTGGTGGGGGAA
CATGAAGAATTTGAGACGACGGGGCCCGGAACGACTGAGCATTATTTTTG
CCTTCTCGGATCCGGAATAGATGGGTCCTGGCCCCCCACGCCATTGCATC
TGGTACGAACTCCCCACCACCAGCCACAAGCACGCCACGGTGTTGAGAGA
TATCCAAGGGTTTGCCGCAGAGTTCTCGTGCAGCAGCACGTACCGGACCA
TGGCCAGATCTCTTATGGTGGCCGTCAAGGCCCTAAATCAGGCGCAAATT
ACCCTCAGAACCGTCTCCTGGCTTAGCGCCCTTTTTGGTGACAGTGGCTC
GTCCCAGCCTAAGGTGCATCGCCCCTTTGGTGTCCACGAAAAGGCACACT
TGAAGTTAGCTACGCGCAAAAAAGACAAAGTCATGCAAACCAACCCCGGA
GCACGCGTTGAGCCCGAATTTCTCCCTGAAATCGAATCACATAGGTTGGT
AGAGGAAGCGCTCGACGTAATTAAGAAGTATGGGATTTCGCATGTGAGTG
AGGAGCAACGGATTGAGATGGCGCATCAGCTGAAGCATTTTCCTTTGCCG
AAGGCTGACTTGAAGGAATTGGTCAATATGCAGCGTGTCACGGGGCGCTT
CGAAGACGCCGCTCAAACCCTGGCTCCTTGGGGGTACGGAGACGACTTCA
ACATTGAACAGGTTCCTCCCGCGCTACGCAGCATGCTTGAGCGCATTCAA
GCCTCACCGCATTTTTGTTTGGGAAAGCCCCGGGATATTACCTTGAACCA
TCGCGAGAATTATTTCTATCGTCTAGACCCTCATATTGACCCTGTCGATG
ATGGGGGAAATGTCTTCATCTTGGGGCTGTTGTCAGGGACGGTCTTGACC
TTATCGCCGACCAGTAGAACAATGCACCCGGATCAGCACAAAGCGATGGA
CCCAAGAAGAGTGGCTGAAGTGTCGTGGTTACCTGGGAAGGATATTGATG
TTGACTTGCCTGCACGGACCTTGTTGCATTTGAGTGGTGATGCGCGATAT
AGCTGGTGTCATGGCATACGTCTAGGGGTGACCCATCCGCAGATTGAGGA
TTACTATTTGGGGGCGGAATTACCAGAAGAGGCAAGAGTGCTGGGGGGAG
AGCAGAAGGGAGAAGTCCCTTTGTGGGATTGGTGGGGGAACATGAAGAAT
TTGAGACGACGGGGCCCGGAACGACTGAGCATTATTTTTGCCTTCTCGGA
TCCGGAATAG

Synonyms

Publications