jgi.p|Nanoce1779_2|596587, mRNA_6863 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596587
Unique Name	mRNA_6863
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1814
Alignment location	scaffold_17:289432..291245 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596673
Track	FilteredModels2
ProteinId	596587

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:289432..291245 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596587	gene_6863	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596587	mRNA_6863-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6863	CDS_6863	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:289432..291245+
coding sequence from alignment at scaffold_17:289432..291245+

mRNA sequence

>mRNA_6863 ID=mRNA_6863|Name=jgi.p|Nanoce1779_2|596587|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp
GTGCTGCTGCTGTTGCTGCTGCTGTTGTTGAAAGACCCGACAAAGGTCAT
CTTCGCCAACCTATCGGATAACTTTTGCAGACCCACGGTGCTGCCATCAC
CATCACCACCACCACCACTAGCAGCAGCAGCACTGGCAGCAGCAGCCGAA
GCAGCGGCCGTCAGATCAAATTCGGAAGAACTTCCTGCGGCCGCAGGTAG
GGGGAAACAGGAGTAGGAAGAGATAGAGGAAGGAGAGGTGACAACCGAGG
TTTGACCCCAAGGAGAGGTGCTTAGCATTGATCGCGTCGCGCCTTGGTTC
GTGCTACTGCCACCGACCGGAGAGAAAGAAGCAAAAGAAGAGGAAGAAGA
AGTATTAGTACTGTTAACACTACTGCTGCTGCTGCTAGTCCACAAGGAAG
CCGTGGCAAAGTAGTCGTGCGGGATATAGCCGTCAACGGAAGGCGACAAC
AATGTGAAGGCTGAGAAAGATGGCTCCCTCTTGCACACGCTACTATCACT
CCCCTCCTCCGCCCACCAATTGCCCTCGTCCGTCAATCCTTCCTTCCCTT
TCTCATACTCCTCTTCCTCCTCCTCACTATCGAAAGCATCGCCGTTGTGG
GGGCCTAGGCCCTCCTTCCCTCCCTCCTTCACTTCCTCCTCCACTTCATC
ATCCGACTCAATCAAACGAAGCACCTCGGCCTTCACCCTTTGCATGGTTT
GACGCTTGTCCTGCATTTGAAGTCGCGTCTCGCTCTGTTGTTGCTGCTGC
TGTTGCTGCGGATTGATACTCTGGTGTTTTGGGGAGCAATTTATCGGCGA
GAAAGGGGTGGTAGAGGAGGAGAGGACCGGGAGGGTTACGTCAGGGTGGA
GGTGGGAAGTAGGAACGATGGAGGGCAAGCCCAGCACCATGGCTGATGTG
TCGTCGTGCCGCTGATGCAGATCGACAATCAGAGAGGGTGATGTGGTGGT
GTTGCTGCTACTGCTGCTGCTGATGTTGATCGCTGCGGTGGGTGTCGTTG
ACTGTGGCAGCTGTGCGGCATGGTGCAATAACACGCGGGCGAGCTCCTCC
TTGGTCATGAGGGCGAGAGTGGCGCCACCATTCTCCCCCTCTTTCTTGCC
ACCCTGCGAAATCGTGTTGCTCATCTTGCTGTCGCTGCTGTCGTTGATCG
GGTGCACAGCCTTGACCACCAAAGCCTCTAGCTTGATAAGCCCGCCAGTG
CCCAGCAAGGCGCGCGGGCTCGGGAGGAAATGCCCTGTGCTGTTGCTGGT
GCTACCACTGCTGCTGCTACCACTACAACTGGGACTAGCATCATCAATGA
GATCCACATCACTGTACGCGATATATGTCGTCGTCATCGTTGCGCCTGGT
GGTGCTCCAGGCATCTCCCCGGCACCCGTTGCTGCGGCAGCAGCAACTAT
CTGGTTGTCTTCTTCAAGCGAAGAGAGAGGACCGCTAAATGTGGCCACAA
CGCCCGGGTTGGTCCAACCGAAGACATGAGAGAGGTGTGTTTTTTGCATC
AGGGTCAAATTATAACCGTCTCGACGCTGGCCCCCATAGGAAATGGGCTG
CATAGCCGCGAAGGCGCCGGGGGTGTCGCCGTCCTCTTCATAATGGTCCA
TCAAGGCCTCCACATCACGTTGACTACAGAAGGGCCAAGGGTGAAGAAAT
AGGGCGGACGACATTAGCTTATTGCTGGAAAGCGTGATCCCTGGGATGTG
CTGTGCGACGATTGCGGCTAGAGGGTCAGTGGGAGGAGCAGATGCAAGGA
TCATGGGCCGGGCCCACCACAAAAATGCAGCGCTCAGAGGCCCCCGTACA
TGCGCCCTGTCTGT

protein sequence of jgi.p|Nanoce1779_2|596587

>mRNA_6863-protein ID=mRNA_6863-protein|Name=jgi.p|Nanoce1779_2|596587|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MLIAAVGVVDCGSCAAWCNNTRASSSLVMRARVAPPFSPSFLPPCEIVLL
ILLSLLSLIGCTALTTKASSLISPPVPSKARGLGRKCPVLLLVLPLLLLP
LQLGLASSMRSTSLYAIYVVVIVAPGGAPGISPAPVAAAAATIWLSSSSE
ERGPLNVATTPGLVQPKT*

mRNA from alignment at scaffold_17:289432..291245+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6863 ID=mRNA_6863|Name=jgi.p|Nanoce1779_2|596587|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp|location=Sequence derived from alignment at scaffold_17:289432..291245+ (Nannochloropsis oceanica)
GTGCTGCTGCTGTTGCTGCTGCTGTTGTTGAAAGACCCGACAAAGGTCAT
CTTCGCCAACCTATCGGATAACTTTTGCAGACCCACGGTGCTGCCATCAC
CATCACCACCACCACCACTAGCAGCAGCAGCACTGGCAGCAGCAGCCGAA
GCAGCGGCCGTCAGATCAAATTCGGAAGAACTTCCTGCGGCCGCAGGTAG
GGGGAAACAGGAGTAGGAAGAGATAGAGGAAGGAGAGGTGACAACCGAGG
TTTGACCCCAAGGAGAGGTGCTTAGCATTGATCGCGTCGCGCCTTGGTTC
GTGCTACTGCCACCGACCGGAGAGAAAGAAGCAAAAGAAGAGGAAGAAGA
AGTATTAGTACTGTTAACACTACTGCTGCTGCTGCTAGTCCACAAGGAAG
CCGTGGCAAAGTAGTCGTGCGGGATATAGCCGTCAACGGAAGGCGACAAC
AATGTGAAGGCTGAGAAAGATGGCTCCCTCTTGCACACGCTACTATCACT
CCCCTCCTCCGCCCACCAATTGCCCTCGTCCGTCAATCCTTCCTTCCCTT
TCTCATACTCCTCTTCCTCCTCCTCACTATCGAAAGCATCGCCGTTGTGG
GGGCCTAGGCCCTCCTTCCCTCCCTCCTTCACTTCCTCCTCCACTTCATC
ATCCGACTCAATCAAACGAAGCACCTCGGCCTTCACCCTTTGCATGGTTT
GACGCTTGTCCTGCATTTGAAGTCGCGTCTCGCTCTGTTGTTGCTGCTGC
TGTTGCTGCGGATTGATACTCTGGTGTTTTGGGGAGCAATTTATCGGCGA
GAAAGGGGTGGTAGAGGAGGAGAGGACCGGGAGGGTTACGTCAGGGTGGA
GGTGGGAAGTAGGAACGATGGAGGGCAAGCCCAGCACCATGGCTGATGTG
TCGTCGTGCCGCTGATGCAGATCGACAATCAGAGAGGGTGATGTGGTGGT
GTTGCTGCTACTGCTGCTGCTGATGTTGATCGCTGCGGTGGGTGTCGTTG
ACTGTGGCAGCTGTGCGGCATGGTGCAATAACACGCGGGCGAGCTCCTCC
TTGGTCATGAGGGCGAGAGTGGCGCCACCATTCTCCCCCTCTTTCTTGCC
ACCCTGCGAAATCGTGTTGCTCATCTTGCTGTCGCTGCTGTCGTTGATCG
GGTGCACAGCCTTGACCACCAAAGCCTCTAGCTTGATAAGCCCGCCAGTG
CCCAGCAAGGCGCGCGGGCTCGGGAGGAAATGCCCTGTGCTGTTGCTGGT
GCTACCACTGCTGCTGCTACCACTACAACTGGGACTAGCATCATCAATGA
GATCCACATCACTGTACGCGATATATGTCGTCGTCATCGTTGCGCCTGGT
GGTGCTCCAGGCATCTCCCCGGCACCCGTTGCTGCGGCAGCAGCAACTAT
CTGGTTGTCTTCTTCAAGCGAAGAGAGAGGACCGCTAAATGTGGCCACAA
CGCCCGGGTTGGTCCAACCGAAGACATGAGAGAGGTGTGTTTTTTGCATC
AGGGTCAAATTATAACCGTCTCGACGCTGGCCCCCATAGGAAATGGGCTG
CATAGCCGCGAAGGCGCCGGGGGTGTCGCCGTCCTCTTCATAATGGTCCA
TCAAGGCCTCCACATCACGTTGACTACAGAAGGGCCAAGGGTGAAGAAAT
AGGGCGGACGACATTAGCTTATTGCTGGAAAGCGTGATCCCTGGGATGTG
CTGTGCGACGATTGCGGCTAGAGGGTCAGTGGGAGGAGCAGATGCAAGGA
TCATGGGCCGGGCCCACCACAAAAATGCAGCGCTCAGAGGCCCCCGTACA
TGCGCCCTGTCTGT

Coding sequence (CDS) from alignment at scaffold_17:289432..291245+

>mRNA_6863 ID=mRNA_6863|Name=jgi.p|Nanoce1779_2|596587|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_17:289432..291245+ (Nannochloropsis oceanica)
ATGTTGATCGCTGCGGTGGGTGTCGTTGACTGTGGCAGCTGTGCGGCATG
GTGCAATAACACGCGGGCGAGCTCCTCCTTGGTCATGAGGGCGAGAGTGG
CGCCACCATTCTCCCCCTCTTTCTTGCCACCCTGCGAAATCGTGTTGCTC
ATCTTGCTGTCGCTGCTGTCGTTGATCGGGTGCACAGCCTTGACCACCAA
AGCCTCTAGCTTGATAAGCCCGCCAGTGCCCAGCAAGGCGCGCGGGCTCG
GGAGGAAATGCCCTGTGCTGTTGCTGGTGCTACCACTGCTGCTGCTACCA
CTACAACTGGGACTAGCATCATCAATGAGATCCACATCACTGTACGCGAT
ATATGTCGTCGTCATCGTTGCGCCTGGTGGTGCTCCAGGCATCTCCCCGG
CACCCGTTGCTGCGGCAGCAGCAACTATCTGGTTGTCTTCTTCAAGCGAA
GAGAGAGGACCGCTAAATGTGGCCACAACGCCCGGGTTGGTCCAACCGAA
GACATGA

Synonyms

Publications