jgi.p|Nanoce1779_2|596582, mRNA_6861 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596582
Unique NamemRNA_6861
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length625
Alignment locationscaffold_17:286398..287022 +

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Properties
Property NameValue
TranscriptId596668
TrackFilteredModels2
ProteinId596582
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:286398..287022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596582gene_6861Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596582mRNA_6861-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6861CDS_6861Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6861 ID=mRNA_6861|Name=jgi.p|Nanoce1779_2|596582|organism=Nannochloropsis oceanica|type=mRNA|length=625bp
CTCTTTTCGGGTGCCCCCGGATGCATCGAGATCGCACGTGCCTTGCTGTT
GCGTCCGAAGGCGGAAGGGAAGGAGGGAGGGACGGGAAAAGATCTCCCTT
CTCCCTCGCTTATGTGCAACAATCCCTGCTTCGAAGCTGCCCAGTGGATA
AACCAACAAGAAAATTCAGCAGCAGCGACAGCGGCGGCATCGACATCGGC
ATCAAACTCATTAGTGGAACACCTTCCCCTCGATTTCTGCGCGCGAAATC
ACGAGGGGAAATACTGCCAAGAAATCTACACTACCATTCTCCATACGAAC
AGCGTATCGTTTTCCTCCTCCTCCTCCTCCTCCTCATTCTCTGCCTCTTT
CACTACATCCTCGTCCAGTCTATGCCAGGCACTCCAAAACATGGGCTGCT
GCTTCCACCACCTTCTACCCCGTTTTGCCCTCTCACAGAACACCACCACC
CATCTCCTTCACTCTTGCCCACCTCCTCCGTCCCACCTTCATGCCTGCAC
CTCCCCACCAAGCGCACTCTTCCGTCAAAACCCCTCCTCCTCTGCCTCCT
CCTCTTCCTCCTTTCTTGCTTGGTGTAACAGTCTCTCGGCGGCAGAGTTG
GTTCTTGTTAGCAGTTTTAGTCTAC
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protein sequence of jgi.p|Nanoce1779_2|596582

>mRNA_6861-protein ID=mRNA_6861-protein|Name=jgi.p|Nanoce1779_2|596582|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MHRDRTCLAVASEGGREGGRDGKRSPFSLAYVQQSLLRSCPVDKPTRKFS
SSDSGGIDIGIKLISGTPSPRFLRAKSRGEILPRNLHYHSPYEQRIVFLL
LLLLLILCLFHYILVQSMPGTPKHGLLLPPPSTPFCPLTEHHHPSPSLLP
TSSVPPSCLHLPTKRTLPSKPLLLCLLLFLLSCLV*
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mRNA from alignment at scaffold_17:286398..287022+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6861 ID=mRNA_6861|Name=jgi.p|Nanoce1779_2|596582|organism=Nannochloropsis oceanica|type=mRNA|length=625bp|location=Sequence derived from alignment at scaffold_17:286398..287022+ (Nannochloropsis oceanica)
CTCTTTTCGGGTGCCCCCGGATGCATCGAGATCGCACGTGCCTTGCTGTT
GCGTCCGAAGGCGGAAGGGAAGGAGGGAGGGACGGGAAAAGATCTCCCTT
CTCCCTCGCTTATGTGCAACAATCCCTGCTTCGAAGCTGCCCAGTGGATA
AACCAACAAGAAAATTCAGCAGCAGCGACAGCGGCGGCATCGACATCGGC
ATCAAACTCATTAGTGGAACACCTTCCCCTCGATTTCTGCGCGCGAAATC
ACGAGGGGAAATACTGCCAAGAAATCTACACTACCATTCTCCATACGAAC
AGCGTATCGTTTTCCTCCTCCTCCTCCTCCTCCTCATTCTCTGCCTCTTT
CACTACATCCTCGTCCAGTCTATGCCAGGCACTCCAAAACATGGGCTGCT
GCTTCCACCACCTTCTACCCCGTTTTGCCCTCTCACAGAACACCACCACC
CATCTCCTTCACTCTTGCCCACCTCCTCCGTCCCACCTTCATGCCTGCAC
CTCCCCACCAAGCGCACTCTTCCGTCAAAACCCCTCCTCCTCTGCCTCCT
CCTCTTCCTCCTTTCTTGCTTGGTGTAACAGTCTCTCGGCGGCAGAGTTG
GTTCTTGTTAGCAGTTTTAGTCTAC
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Coding sequence (CDS) from alignment at scaffold_17:286398..287022+

>mRNA_6861 ID=mRNA_6861|Name=jgi.p|Nanoce1779_2|596582|organism=Nannochloropsis oceanica|type=CDS|length=558bp|location=Sequence derived from alignment at scaffold_17:286398..287022+ (Nannochloropsis oceanica)
ATGCATCGAGATCGCACGTGCCTTGCTGTTGCGTCCGAAGGCGGAAGGGA
AGGAGGGAGGGACGGGAAAAGATCTCCCTTCTCCCTCGCTTATGTGCAAC
AATCCCTGCTTCGAAGCTGCCCAGTGGATAAACCAACAAGAAAATTCAGC
AGCAGCGACAGCGGCGGCATCGACATCGGCATCAAACTCATTAGTGGAAC
ACCTTCCCCTCGATTTCTGCGCGCGAAATCACGAGGGGAAATACTGCCAA
GAAATCTACACTACCATTCTCCATACGAACAGCGTATCGTTTTCCTCCTC
CTCCTCCTCCTCCTCATTCTCTGCCTCTTTCACTACATCCTCGTCCAGTC
TATGCCAGGCACTCCAAAACATGGGCTGCTGCTTCCACCACCTTCTACCC
CGTTTTGCCCTCTCACAGAACACCACCACCCATCTCCTTCACTCTTGCCC
ACCTCCTCCGTCCCACCTTCATGCCTGCACCTCCCCACCAAGCGCACTCT
TCCGTCAAAACCCCTCCTCCTCTGCCTCCTCCTCTTCCTCCTTTCTTGCT
TGGTGTAA
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Synonyms
Publications