jgi.p|Nanoce1779_2|596579, mRNA_6860 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596579
Unique Name	mRNA_6860
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1534
Alignment location	scaffold_17:284395..285928 +

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Properties


Property Name	Value
TranscriptId	596665
Track	FilteredModels2
ProteinId	596579

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:284395..285928 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596579	gene_6860	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596579	mRNA_6860-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6860	CDS_6860	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:284395..285928+
coding sequence from alignment at scaffold_17:284395..285928+

mRNA sequence

>mRNA_6860 ID=mRNA_6860|Name=jgi.p|Nanoce1779_2|596579|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp
ACAGGCCACAAACAAGATATATACCAAAGCCTCGGCGGGCTGGCCATGGA
CCTGGCTCGCTAAAACAAAACCCGCGACGAAGGCGGCCCACAGCAGCATC
AACTTGAACGCCCACGCGCCTGCACCCACCACCAAGATGACCATTACCAT
TCCCTTGCGACGCCGCGCCTCTGCTCGCGGACGTCGCCGTCGTCGTCGTC
ACCGCATTCCTCTTTCCTCCCGACCACAACCCCAGCAGGGGGATCGCTGG
CTCCAAGAAGGCGAATCCAGCCCACACCTTCCTCCCTCTACAGCCTACTC
CTTGGTAACGACAGGGGGGAGTCATTTCCTAACCCTAGCCGTAGGGACGC
CACCACAGCCACAGGCCGTCATTGTGGATACGGGTAGTACCTTAACGGCA
TTCGGGTGTGTGCCAGGGTGCGATTTTGGGTGTGGTACCCATACTTACCC
CTTTTTTGCGTTGGACAAGAGTAGTTCGGCGCGGACGCTGACGTGTGGGG
AATGCGGGACACAGTGCTTAGATGATAAATGTCTAGTATCCCAAAGATAC
TCGGAGGGGAGTTCGTGGCGGGCCTTTTCGGTGGAGGATCGCGTTGGCTT
GATGGGGATGGGAGGGACGAGGAGTGCCGGCCAGCAGCAGGCTGACGACA
GTGCTGCCAGCGGTGCTAATGACACAATTCCGTTTGTGTTTGGATGCCAG
ACCAAGCTCACGTACGTTTTCAAAAGGCCTACTTCAAGTGGATTCAGCTT
ATGTACACTGCATTGGTTTGTCGCACTCACCTATCTTTTTTCCTCCCTCC
CTTTCCTCTAGAGGCCTCTTCGTCCCCCAGAAAGAGAATGGCATCATGGG
TCTGTCCCGCGGTCCGGAAAATTTTATCTCACGACTCAAGGCTGCTGGTA
AAATTCCCCGTGCATCATTTTCCATATGCTTCGACGAAGACGAGGAGGAC
GGAGGGAGGATCATGATTGGGGGTGGTGGGGGTGGGGGGGAGGAGGAAGG
GAAGGCGGAAATGAAGGAGGAGGGATATGTCTTCGCCTCCCTCACTTCTT
CTCCAAATGGATGGTTTCTCGTCGATCTCGCTGGTCTATCTCTGGGTGGG
CGACCACTCTCCTCCCCCCTCCCTCCCTCCTTGCCTTCGTCTTCCTCTTC
CCCTCCTGCTCTAACCCTTGAACGTCGTCGACATGCCTTGCTAGACTCAG
GAACTACAGATACCTATCTCCTCCTCTCTGACCTCCCCTCCTTCTCATCC
CTCTTCAAGCAAGCAACAAATAACAAATTGGAGTTCAATTCAGATGCTTC
TTATCATCTCTCTCTGCACGAAATACTTCTGTTGCCCAGCCTGGAAGTGG
AATTCAGGAAGGAGGAAGGGGAGGACGGGAAAGAGGAAGGGGTGGTGAAA
TTAGTGATACCACCATTGTCTTACATGGAAGAAATAGGCGTGAAGGGCCA
AGAGAAGGGAGAGAAGGAGGAGAGCATGTGGGACGGAGGGAGGAGACAAG
GGGTGTGGGTGCCGAGGGTGTACTTTACGGAGAG

protein sequence of jgi.p|Nanoce1779_2|596579

>mRNA_6860-protein ID=mRNA_6860-protein|Name=jgi.p|Nanoce1779_2|596579|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MTITIPLRRRASARGRRRRRRHRIPLSSRPQPQQGDRWLQEGESSPHLPP
STAYSLVTTGGSHFLTLAVGTPPQPQAVIVDTGSTLTAFGCVPGCDFGCG
THTYPFFALDKSSSARTLTCGECGTQCLDDKCLVSQRYSEGSSWRAFSVE
DRVGLMGMGGTRSAGQQQADDSAASGANDTIPFVFGCQTKLTYVFKRPTS
SGFSLCTLHWFVALTYLFSSLPFL*

mRNA from alignment at scaffold_17:284395..285928+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6860 ID=mRNA_6860|Name=jgi.p|Nanoce1779_2|596579|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp|location=Sequence derived from alignment at scaffold_17:284395..285928+ (Nannochloropsis oceanica)
ACAGGCCACAAACAAGATATATACCAAAGCCTCGGCGGGCTGGCCATGGA
CCTGGCTCGCTAAAACAAAACCCGCGACGAAGGCGGCCCACAGCAGCATC
AACTTGAACGCCCACGCGCCTGCACCCACCACCAAGATGACCATTACCAT
TCCCTTGCGACGCCGCGCCTCTGCTCGCGGACGTCGCCGTCGTCGTCGTC
ACCGCATTCCTCTTTCCTCCCGACCACAACCCCAGCAGGGGGATCGCTGG
CTCCAAGAAGGCGAATCCAGCCCACACCTTCCTCCCTCTACAGCCTACTC
CTTGGTAACGACAGGGGGGAGTCATTTCCTAACCCTAGCCGTAGGGACGC
CACCACAGCCACAGGCCGTCATTGTGGATACGGGTAGTACCTTAACGGCA
TTCGGGTGTGTGCCAGGGTGCGATTTTGGGTGTGGTACCCATACTTACCC
CTTTTTTGCGTTGGACAAGAGTAGTTCGGCGCGGACGCTGACGTGTGGGG
AATGCGGGACACAGTGCTTAGATGATAAATGTCTAGTATCCCAAAGATAC
TCGGAGGGGAGTTCGTGGCGGGCCTTTTCGGTGGAGGATCGCGTTGGCTT
GATGGGGATGGGAGGGACGAGGAGTGCCGGCCAGCAGCAGGCTGACGACA
GTGCTGCCAGCGGTGCTAATGACACAATTCCGTTTGTGTTTGGATGCCAG
ACCAAGCTCACGTACGTTTTCAAAAGGCCTACTTCAAGTGGATTCAGCTT
ATGTACACTGCATTGGTTTGTCGCACTCACCTATCTTTTTTCCTCCCTCC
CTTTCCTCTAGAGGCCTCTTCGTCCCCCAGAAAGAGAATGGCATCATGGG
TCTGTCCCGCGGTCCGGAAAATTTTATCTCACGACTCAAGGCTGCTGGTA
AAATTCCCCGTGCATCATTTTCCATATGCTTCGACGAAGACGAGGAGGAC
GGAGGGAGGATCATGATTGGGGGTGGTGGGGGTGGGGGGGAGGAGGAAGG
GAAGGCGGAAATGAAGGAGGAGGGATATGTCTTCGCCTCCCTCACTTCTT
CTCCAAATGGATGGTTTCTCGTCGATCTCGCTGGTCTATCTCTGGGTGGG
CGACCACTCTCCTCCCCCCTCCCTCCCTCCTTGCCTTCGTCTTCCTCTTC
CCCTCCTGCTCTAACCCTTGAACGTCGTCGACATGCCTTGCTAGACTCAG
GAACTACAGATACCTATCTCCTCCTCTCTGACCTCCCCTCCTTCTCATCC
CTCTTCAAGCAAGCAACAAATAACAAATTGGAGTTCAATTCAGATGCTTC
TTATCATCTCTCTCTGCACGAAATACTTCTGTTGCCCAGCCTGGAAGTGG
AATTCAGGAAGGAGGAAGGGGAGGACGGGAAAGAGGAAGGGGTGGTGAAA
TTAGTGATACCACCATTGTCTTACATGGAAGAAATAGGCGTGAAGGGCCA
AGAGAAGGGAGAGAAGGAGGAGAGCATGTGGGACGGAGGGAGGAGACAAG
GGGTGTGGGTGCCGAGGGTGTACTTTACGGAGAG

Coding sequence (CDS) from alignment at scaffold_17:284395..285928+

>mRNA_6860 ID=mRNA_6860|Name=jgi.p|Nanoce1779_2|596579|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_17:284395..285928+ (Nannochloropsis oceanica)
ATGACCATTACCATTCCCTTGCGACGCCGCGCCTCTGCTCGCGGACGTCG
CCGTCGTCGTCGTCACCGCATTCCTCTTTCCTCCCGACCACAACCCCAGC
AGGGGGATCGCTGGCTCCAAGAAGGCGAATCCAGCCCACACCTTCCTCCC
TCTACAGCCTACTCCTTGGTAACGACAGGGGGGAGTCATTTCCTAACCCT
AGCCGTAGGGACGCCACCACAGCCACAGGCCGTCATTGTGGATACGGGTA
GTACCTTAACGGCATTCGGGTGTGTGCCAGGGTGCGATTTTGGGTGTGGT
ACCCATACTTACCCCTTTTTTGCGTTGGACAAGAGTAGTTCGGCGCGGAC
GCTGACGTGTGGGGAATGCGGGACACAGTGCTTAGATGATAAATGTCTAG
TATCCCAAAGATACTCGGAGGGGAGTTCGTGGCGGGCCTTTTCGGTGGAG
GATCGCGTTGGCTTGATGGGGATGGGAGGGACGAGGAGTGCCGGCCAGCA
GCAGGCTGACGACAGTGCTGCCAGCGGTGCTAATGACACAATTCCGTTTG
TGTTTGGATGCCAGACCAAGCTCACGTACGTTTTCAAAAGGCCTACTTCA
AGTGGATTCAGCTTATGTACACTGCATTGGTTTGTCGCACTCACCTATCT
TTTTTCCTCCCTCCCTTTCCTCTAG

Synonyms

Publications