jgi.p|Nanoce1779_2|573796, mRNA_686 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573796
Unique Name	mRNA_686
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1080
Alignment location	scaffold_2:191774..193578 +

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Properties


Property Name	Value
TranscriptId	573882
Track	FilteredModels2
ProteinId	573796

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:191774..193578 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573796	gene_686	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573796	mRNA_686-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_686	CDS_686	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:191774..193578+
coding sequence from alignment at scaffold_2:191774..193578+

mRNA sequence

>mRNA_686 ID=mRNA_686|Name=jgi.p|Nanoce1779_2|573796|organism=Nannochloropsis oceanica|type=mRNA|length=1080bp
CAGGCTGGCCGGTGCTCCACGCCTCGCCCTTTATTCAGTTTGCGGTCCAA
AGAACACTCTTGGCATCATCATCATCATCGACATAATCCTCATAACTTCT
CCACAACAATGCTGGGCATGAACCCTTTGAGCTCCTTAGGCGGAGTTGGA
GTCGGTCCGTCCGCACAAACGGGTGGCTTGACCGGTGGCGGCCCCGGAGG
ATATGAGGAATTGACGCCGTTGGTCATGCAGTTGTCGGAGCCGGACAAGC
GCGAAACCGCCCTGATGGAATTGAGCAAGAAGCGTGAGGTCTATCCGGAC
CTGGCTCCCATCCTCTGGCACTCTGTCGGAACCATGGCTGCCCTCCTTCA
GGAAATTATTGCCATTTACCCTATGCTTTCCCCCCCCACCCTAACGGCCC
AAGCCAGCAACCGTGTATGCAACGCCCTGGCCTTGCTGCAGTGTGTGGCG
AGCCATGCTGAGACCAGGGGACTCTTTTTGCAAGCGCACATTCCCATGTA
TCTGTACCCTTTCCTTAATACGGTCATGAGCAAAAGTCGACCTTTCGAGT
ACCTGCGTCTCACGTCTCTAGGCGTGATAGGGGCCTTGGTGAAGATGGAC
GATTCAGAGGTCATCTCCTTCCTCCTTCAGACCGAAATAATTCCCCTGTG
CCTCCGAATCATGGAGACGGGAAATGAATTGAGCAAGACAGTGGCCACTT
TTATCGTACAAAAAATCCTGCTTGATGAGATGGGATTGAACTATATCTGC
GCCACGGCCGAGCGCTTCTTTGCCGTGTCCACAGTGCTGAGTAACATGGT
GCAAGCGCTGATAGAGGTTCCTTCAGTGAGGCTACTCAAGCATATTGTCC
GTTGTTATTTACGCCTGTCGGAGAATCCGAGAGCGCGTGATGCGCTGCGA
CAGTGCTTGCCCGACGCTTTGAGGAGTGACCAGACGTTTGCGCAGTGTCT
GAAGGATGATGTGACGATCAATCGCTGGTTGGCGAACTTGCTGTATAACA
TTAGCGAGGGAGTTTAGTCTCGTGATAGGCATAGACGGAGGGAGGAGTAA
GTGGGGAGGAGTGCTGAGAGGAGGGGGAGG

protein sequence of jgi.p|Nanoce1779_2|573796

>mRNA_686-protein ID=mRNA_686-protein|Name=jgi.p|Nanoce1779_2|573796|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MLGMNPLSSLGGVGVGPSAQTGGLTGGGPGGYEELTPLVMQLSEPDKRET
ALMELSKKREVYPDLAPILWHSVGTMAALLQEIIAIYPMLSPPTLTAQAS
NRVCNALALLQCVASHAETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLR
LTSLGVIGALVKMDDSEVISFLLQTEIIPLCLRIMETGNELSKTVATFIV
QKILLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCY
LRLSENPRARDALRQCLPDALRSDQTFAQCLKDDVTINRWLANLLYNISE
GV*

mRNA from alignment at scaffold_2:191774..193578+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_686 ID=mRNA_686|Name=jgi.p|Nanoce1779_2|573796|organism=Nannochloropsis oceanica|type=mRNA|length=1805bp|location=Sequence derived from alignment at scaffold_2:191774..193578+ (Nannochloropsis oceanica)
CAGGCTGGCCGGTGCTCCACGCCTCGCCCTTTATTCAGTTTGCGGTCCAA
AGAACACTCTTGGCATCATCATCATCATCGACATAATCCTCATAACTTCT
CCACAACAATGCTGGGCATGAACCCTTTGAGCTCCTTAGGCGGAGGTACG
TGCGGCGAAGCCAAATAAAGAGGATGAGCCGAAGGAGATATGGCGGTAGG
GGAAGGAGTGGGCAGGGTGTGGCTTGGCATGCCCTTCCGCGTATCTATCT
CCCAGTGGAAGGGTAAAGACAAGAGGGGGGTCGAAAAGGCGGGGCAGGCA
CATGCATGTGCGCTTCTACGCTTTCCCTGTGATCCCCAACCCCCTGCTCT
CTCATTCACTCCTCTCCTTAAATCCTCAATCGTCATTGTCGACCGACTAA
TGTCTAGTGCTACCATGCTCTTCACTCACACCAACCACCCTCCGTCAAAT
TAATATGCATACATAGTTGGAGTCGGTCCGTCCGCACAAACGGGTGGCTT
GACCGGTGGCGGCCCCGGAGGATATGAGGAATTGACGCCGTTGGTCATGC
AGTTGTCGGAGCCGGACAAGGTAAGGAACGAAGCAAAGCAAGCAAAAAAA
AAAGGGCAGACAGTATGAGAGAGATTGGAAAGTGAGAGTGGAGAGACAGG
GGAACGAGGCAAATGAATGGCCGTCAAGTATCTTGCATCCCCTCCCACAC
ACTGTACGTTTTCCCTTCTCTCCCTCCATCCCTCCCTCCTTCCCTCCCTC
CTTCCATACCTCCCTCCCTCCCTCCCCTCCACCCAATCCACTCAGCGCGA
AACCGCCCTGATGGAATTGAGCAAGAAGCGTGAGGTCTATCCGGACCTGG
CTCCCATCCTCTGGCACTCTGTCGGAACCATGGCTGCCCTCCTTCAGGAA
ATTATTGCCATTTACCCTATGCTTTCCCCCCCCACCCTAACGGCCCAAGC
CAGCAACCGTGTATGCAACGCCCTGGCCTTGCTGCAGTGTGTGGCGAGCC
ATGCTGAGACCAGGGGACTCTTTTTGCAAGGTCATGATTAAGTGGGGGGA
GTGGGAGGGGAGGGAGGAGGGAGGAGGTAGAAGAGGGGCGCGCACCAGGG
CAGGCCTTGTAAATGCACCTGAATTTAAAGCTCTCGTTCTCAGTGAACTA
ATATTCCCACGCCCTCTCTCTCTTCCTCCCACCCACTTGATCGCCTCTTT
CTCCCTTAGCGCACATTCCCATGTATCTGTACCCTTTCCTTAATACGGTC
ATGAGCAAAAGTCGACCTTTCGAGTACCTGCGTCTCACGTCTCTAGGCGT
GATAGGGGCCTTGGTGAAGATGGACGATTCAGAGGTCATCTCCTTCCTCC
TTCAGACCGAAATAATTCCCCTGTGCCTCCGAATCATGGAGACGGGAAAT
GAATTGAGCAAGACAGTGGCCACTTTTATCGTACAAAAAATCCTGCTTGA
TGAGATGGGATTGAACTATATCTGCGCCACGGCCGAGCGCTTCTTTGCCG
TGTCCACAGTGCTGAGTAACATGGTGCAAGCGCTGATAGAGGTTCCTTCA
GTGAGGCTACTCAAGCATATTGTCCGTTGTTATTTACGCCTGTCGGAGAA
TCCGAGAGCGCGTGATGCGCTGCGACAGTGCTTGCCCGACGCTTTGAGGA
GTGACCAGACGTTTGCGCAGTGTCTGAAGGATGATGTGACGATCAATCGC
TGGTTGGCGAACTTGCTGTATAACATTAGCGAGGGAGTTTAGTCTCGTGA
TAGGCATAGACGGAGGGAGGAGTAAGTGGGGAGGAGTGCTGAGAGGAGGG
GGAGG

Coding sequence (CDS) from alignment at scaffold_2:191774..193578+

>mRNA_686 ID=mRNA_686|Name=jgi.p|Nanoce1779_2|573796|organism=Nannochloropsis oceanica|type=CDS|length=3636bp|location=Sequence derived from alignment at scaffold_2:191774..193578+ (Nannochloropsis oceanica)
ATGCTGGGCATGAACCCTTTGAGCTCCTTAGGCGGAGTTGGAGTCGGTCC
GTCCGCACAAACGGGTGGCTTGACCGGTGGCGGCCCCGGAGGATATGAGG
AATTGACGCCGTTGGTCATGCAGTTGTCGGAGCCGGACAAGCGCGAAACC
GCCCTGATGGAATTGAGCAAGAAGCGTGAGGTCTATCCGGACCTGGCTCC
CATCCTCTGGCACTCTGTCGGAACCATGGCTGCCCTCCTTCAGGAAATTA
TTGCCATTTACCCTATGCTTTCCCCCCCCACCCTAACGGCCCAAGCCAGC
AACCGTGTATGCAACGCCCTGGCCTTGCTGCAGTGTGTGGCGAGCCATGC
TGAGACCAGGGGACTCTTTTTGCAAGCGCACATTCCCATGTATCTGTACC
CTTTCCTTAATACGGTCATGAGCAAAAGTCGACCTTTCGAGTACCTGCGT
CTCACGTCTCTAGGCGTGATAGGGGCCTTGGTGAAGATGGACGATTCAGA
GGTCATCTCCTTCCTCCTTCAGACCGAAATAATTCCCCTGTGCCTCCGAA
TCATGGAGACGGGAAATGAATTGAGCAAGACAGTGGCCACTTTTATCGTA
CAAAAAATCCTGCTTGATGAGATGGGATTGAACTATATCTGCGCCACGGC
CGAGCGCTTCTTTGCCGTGTCCACAGTGCTGAGTAACATGGTGCAAGCGC
TGATAGAGGTTCCTTCAGTGAGGCTACTCAAGCATATTGTCCGTTGTTAT
TTACGCCTGTCGGAGAATCCGAGAGCGCGTGATGCGCTGCGACAGTGCTT
GCCCGACGCTTTGAGGAGTGACCAGACGTTTGCGCAGTGTCTGAAGGATG
ATGTGACGATCAATCGCTGGTTGGCGAACTTGCTGTATAACATTAGCGAG
GGAGTTTAGATGCTGGGCATGAACCCTTTGAGCTCCTTAGGCGGAGTTGG
AGTCGGTCCGTCCGCACAAACGGGTGGCTTGACCGGTGGCGGCCCCGGAG
GATATGAGGAATTGACGCCGTTGGTCATGCAGTTGTCGGAGCCGGACAAG
CGCGAAACCGCCCTGATGGAATTGAGCAAGAAGCGTGAGGTCTATCCGGA
CCTGGCTCCCATCCTCTGGCACTCTGTCGGAACCATGGCTGCCCTCCTTC
AGGAAATTATTGCCATTTACCCTATGCTTTCCCCCCCCACCCTAACGGCC
CAAGCCAGCAACCGTGTATGCAACGCCCTGGCCTTGCTGCAGTGTGTGGC
GAGCCATGCTGAGACCAGGGGACTCTTTTTGCAAGCGCACATTCCCATGT
ATCTGTACCCTTTCCTTAATACGGTCATGAGCAAAAGTCGACCTTTCGAG
TACCTGCGTCTCACGTCTCTAGGCGTGATAGGGGCCTTGGTGAAGATGGA
CGATTCAGAGGTCATCTCCTTCCTCCTTCAGACCGAAATAATTCCCCTGT
GCCTCCGAATCATGGAGACGGGAAATGAATTGAGCAAGACAGTGGCCACT
TTTATCGTACAAAAAATCCTGCTTGATGAGATGGGATTGAACTATATCTG
CGCCACGGCCGAGCGCTTCTTTGCCGTGTCCACAGTGCTGAGTAACATGG
TGCAAGCGCTGATAGAGGTTCCTTCAGTGAGGCTACTCAAGCATATTGTC
CGTTGTTATTTACGCCTGTCGGAGAATCCGAGAGCGCGTGATGCGCTGCG
ACAGTGCTTGCCCGACGCTTTGAGGAGTGACCAGACGTTTGCGCAGTGTC
TGAAGGATGATGTGACGATCAATCGCTGGTTGGCGAACTTGCTGTATAAC
ATTAGCGAGGGAGTTTAGATGCTGGGCATGAACCCTTTGAGCTCCTTAGG
CGGAGTTGGAGTCGGTCCGTCCGCACAAACGGGTGGCTTGACCGGTGGCG
GCCCCGGAGGATATGAGGAATTGACGCCGTTGGTCATGCAGTTGTCGGAG
CCGGACAAGCGCGAAACCGCCCTGATGGAATTGAGCAAGAAGCGTGAGGT
CTATCCGGACCTGGCTCCCATCCTCTGGCACTCTGTCGGAACCATGGCTG
CCCTCCTTCAGGAAATTATTGCCATTTACCCTATGCTTTCCCCCCCCACC
CTAACGGCCCAAGCCAGCAACCGTGTATGCAACGCCCTGGCCTTGCTGCA
GTGTGTGGCGAGCCATGCTGAGACCAGGGGACTCTTTTTGCAAGCGCACA
TTCCCATGTATCTGTACCCTTTCCTTAATACGGTCATGAGCAAAAGTCGA
CCTTTCGAGTACCTGCGTCTCACGTCTCTAGGCGTGATAGGGGCCTTGGT
GAAGATGGACGATTCAGAGGTCATCTCCTTCCTCCTTCAGACCGAAATAA
TTCCCCTGTGCCTCCGAATCATGGAGACGGGAAATGAATTGAGCAAGACA
GTGGCCACTTTTATCGTACAAAAAATCCTGCTTGATGAGATGGGATTGAA
CTATATCTGCGCCACGGCCGAGCGCTTCTTTGCCGTGTCCACAGTGCTGA
GTAACATGGTGCAAGCGCTGATAGAGGTTCCTTCAGTGAGGCTACTCAAG
CATATTGTCCGTTGTTATTTACGCCTGTCGGAGAATCCGAGAGCGCGTGA
TGCGCTGCGACAGTGCTTGCCCGACGCTTTGAGGAGTGACCAGACGTTTG
CGCAGTGTCTGAAGGATGATGTGACGATCAATCGCTGGTTGGCGAACTTG
CTGTATAACATTAGCGAGGGAGTTTAGATGCTGGGCATGAACCCTTTGAG
CTCCTTAGGCGGAGTTGGAGTCGGTCCGTCCGCACAAACGGGTGGCTTGA
CCGGTGGCGGCCCCGGAGGATATGAGGAATTGACGCCGTTGGTCATGCAG
TTGTCGGAGCCGGACAAGCGCGAAACCGCCCTGATGGAATTGAGCAAGAA
GCGTGAGGTCTATCCGGACCTGGCTCCCATCCTCTGGCACTCTGTCGGAA
CCATGGCTGCCCTCCTTCAGGAAATTATTGCCATTTACCCTATGCTTTCC
CCCCCCACCCTAACGGCCCAAGCCAGCAACCGTGTATGCAACGCCCTGGC
CTTGCTGCAGTGTGTGGCGAGCCATGCTGAGACCAGGGGACTCTTTTTGC
AAGCGCACATTCCCATGTATCTGTACCCTTTCCTTAATACGGTCATGAGC
AAAAGTCGACCTTTCGAGTACCTGCGTCTCACGTCTCTAGGCGTGATAGG
GGCCTTGGTGAAGATGGACGATTCAGAGGTCATCTCCTTCCTCCTTCAGA
CCGAAATAATTCCCCTGTGCCTCCGAATCATGGAGACGGGAAATGAATTG
AGCAAGACAGTGGCCACTTTTATCGTACAAAAAATCCTGCTTGATGAGAT
GGGATTGAACTATATCTGCGCCACGGCCGAGCGCTTCTTTGCCGTGTCCA
CAGTGCTGAGTAACATGGTGCAAGCGCTGATAGAGGTTCCTTCAGTGAGG
CTACTCAAGCATATTGTCCGTTGTTATTTACGCCTGTCGGAGAATCCGAG
AGCGCGTGATGCGCTGCGACAGTGCTTGCCCGACGCTTTGAGGAGTGACC
AGACGTTTGCGCAGTGTCTGAAGGATGATGTGACGATCAATCGCTGGTTG
GCGAACTTGCTGTATAACATTAGCGAGGGAGTTTAG

Synonyms

Publications