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Properties
| Property Name | Value |
|---|
| TranscriptId | 596660 |
| Track | FilteredModels2 |
| ProteinId | 596574 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:278561..280290 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6858 ID=mRNA_6858|Name=jgi.p|Nanoce1779_2|596574|organism=Nannochloropsis oceanica|type=mRNA|length=832bp
ACAACAGAGCGCACAAATGCATCGTCCCTTCGCCTTGTTCTCAGTCGGCC
ATGCGAAGGCCATGTTAATGCTACTCCTTGGCGTCCTAGCCACGACGCAA
GCATTCCTCATCCCCTCGGCGCCCTTCACCTTGTCATCGTCGACGTTGGC
GCCATTGTCTTCAGAAAAAAACGAGGGAACCGTCGAGGTGGCTGAGCGCG
TCATCACTGTGTCCGACTCCGCTCTCGAGCATTTGAAAGACCTTCGCACA
AAGCAAGGCGTCGATCACCTTTATCTTAGGATGGGTGTCCGATCGGGTGG
GTGCTCTGGCATGTCGTATGTCTTAGATGTGATGAAGAAGGAGGACGTCA
CGGAGGAGGACCACATCGAGGCGTACGACGAACACGACTTCTCCTGCGTC
GTCGACCCCAAGAGCCTGTTGTATTTGTTTGGCCTGCGTCTGGACTTTAA
GGACCAATTGATTGGGGGGGGCTTTGCGTTTCTCAACCCGAATGCCCAGG
AGAGCTGTGGGTGCGGGTCCTCTTTTGGGGTCTAAGGAGGAGGGTTAGTA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGCAGAACACATAGAA
GAAAGGCGAGAGAAGAGAAGCCATGAGGGGGTGACAAGGCATGTACATTG
GTGTGACTTTTCGTCTTATATCGTTACTCAGGACAGGGGAAGTGCCGCTC
GCTTCCCCTCCAAGCAAGCAAACACTAAGAACAAGGACCAAAATGACTTC
AAAACCCGTAACAGAAAAAAGAAGTAGGAAAATAAGTGAGGTGGTCAACA
AAGAAGAGAAATATCCAGCTGTCGTGTGGAAA back to topprotein sequence of jgi.p|Nanoce1779_2|596574 >mRNA_6858-protein ID=mRNA_6858-protein|Name=jgi.p|Nanoce1779_2|596574|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MHRPFALFSVGHAKAMLMLLLGVLATTQAFLIPSAPFTLSSSTLAPLSSE
KNEGTVEVAERVITVSDSALEHLKDLRTKQGVDHLYLRMGVRSGGCSGMS
YVLDVMKKEDVTEEDHIEAYDEHDFSCVVDPKSLLYLFGLRLDFKDQLIG
GGFAFLNPNAQESCGCGSSFGV* back to topmRNA from alignment at scaffold_17:278561..280290+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6858 ID=mRNA_6858|Name=jgi.p|Nanoce1779_2|596574|organism=Nannochloropsis oceanica|type=mRNA|length=1730bp|location=Sequence derived from alignment at scaffold_17:278561..280290+ (Nannochloropsis oceanica)
ACAACAGAGCGCACAAATGCATCGTCCCTTCGCCTTGTTCTCAGTCGGCC
ATGCGAAGGCCATGTTAATGCTACTCCTTGGCGTCCTAGCCACGACGCAA
GCATTCCTCATCCCCTCGGCGCCCTTCACCTTGTCATCGTCGACGTTGGC
GCCATTGTCTTCAGGTACGGTTTTGGCCCTCTATCCTGTACTGCGAATCG
GAGGCTTCCCCGCGGCGTTTGTCGTCTCGCTCTCCTCTCCTATCCTCCTT
TGCTTGTTTTTCCCCACGTGGTGTATGGTAGCATTCCAGGTCTTATGAAA
GGGCGTGCGCTTCCCGCTGTCGTCTCTGGCAGTGTGTGGGAGAGATGGGC
GACGGCATCGCCTGCTTGAGACACACAAAAGGGGTCGGCGTATTTCCTCT
CCCTCTGCTCTTTCCTCCCTCCATTTCTTTTCCCTCTGTCGATTGCAGCT
CATGTTATGCTTGAATGCGATGTATTTGCGAGTATGTAGACGCAGTCACT
GGGATTAATTGGGAGGGCCAGGCTAGAGAAGGCGGTTATTCACCCACTCT
TTCCAAAACAGCAGCAGCTGCACACAAGGTGGCAAAGGCCATCGCCACGC
CCAGGACTCAGCGGGGCAAGCTGTTTGCGGATGTAGCAGGCACGTTGGAG
GGGGAAAGAGGGGAAGGGAGGAAAGTCCAAGGGGAATGCCGTGGAGATAA
CGAAACAGGACCAGCAACAAGCAGGACGGACGACTGCTGCTGCTACTGCT
CTCTCTCTTTCTTTCGTTCAGGTCCTTGTCTGCGATGAATTCCGTAGATC
TACCATATTCCTTTACACTTTACTATCTCACTCTATCTTTTCCACACTCC
TTCCCACTGTCCCCCTCCATCTCTGCAGAAAAAAACGAGGGAACCGTCGA
GGTGGCTGAGCGCGTCATCACTGTGTCCGACTCCGCTCTCGAGCATTTGA
AAGACCTTCGCACAAAGCAAGGCGTCGATCACCTTTATCTTAGGATGGGT
GTCCGATCGGGTGGGTGCTCTGGCATGTCGTATGTCTTAGATGTGATGAA
GAAGGAGGTACGTGCTCTGTTGCGTCCTATTCCTCCTTCCTTCCCTCCCC
TCCCTCCCCCTCATTTTTGTGCTGCTGCTGTTGCTGTTACTGACTTCAAA
ATATATATCTTTCAAATAATTGACGACTTAAAGAGTGATTGGTAATGGAG
ACTGACCCTCATCCCGAACCTCCCTGCCTCCCTTCCGTCAGGACGTCACG
GAGGAGGACCACATCGAGGCGTACGACGAACACGACTTCTCCTGCGTCGT
CGACCCCAAGAGCCTGTTGTATTTGTTTGGCCTGCGTCTGGACTTTAAGG
ACCAATTGATTGGGGGGGGCTTTGCGTTTCTCAACCCGAATGCCCAGGAG
AGCTGTGGGTGCGGGTCCTCTTTTGGGGTCTAAGGAGGAGGGTTAGTAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGCAGAACACATAGAAGA
AAGGCGAGAGAAGAGAAGCCATGAGGGGGTGACAAGGCATGTACATTGGT
GTGACTTTTCGTCTTATATCGTTACTCAGGACAGGGGAAGTGCCGCTCGC
TTCCCCTCCAAGCAAGCAAACACTAAGAACAAGGACCAAAATGACTTCAA
AACCCGTAACAGAAAAAAGAAGTAGGAAAATAAGTGAGGTGGTCAACAAA
GAAGAGAAATATCCAGCTGTCGTGTGGAAA back to topCoding sequence (CDS) from alignment at scaffold_17:278561..280290+ >mRNA_6858 ID=mRNA_6858|Name=jgi.p|Nanoce1779_2|596574|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at scaffold_17:278561..280290+ (Nannochloropsis oceanica)
ATGCATCGTCCCTTCGCCTTGTTCTCAGTCGGCCATGCGAAGGCCATGTT
AATGCTACTCCTTGGCGTCCTAGCCACGACGCAAGCATTCCTCATCCCCT
CGGCGCCCTTCACCTTGTCATCGTCGACGTTGGCGCCATTGTCTTCAGAA
AAAAACGAGGGAACCGTCGAGGTGGCTGAGCGCGTCATCACTGTGTCCGA
CTCCGCTCTCGAGCATTTGAAAGACCTTCGCACAAAGCAAGGCGTCGATC
ACCTTTATCTTAGGATGGGTGTCCGATCGGGTGGGTGCTCTGGCATGTCG
TATGTCTTAGATGTGATGAAGAAGGAGGACGTCACGGAGGAGGACCACAT
CGAGGCGTACGACGAACACGACTTCTCCTGCGTCGTCGACCCCAAGAGCC
TGTTGTATTTGTTTGGCCTGCGTCTGGACTTTAAGGACCAATTGATTGGG
GGGGGCTTTGCGTTTCTCAACCCGAATGCCCAGGAGAGCTGTGGGTGCGG
GTCCTCTTTTGGGGTCTAAATGCATCGTCCCTTCGCCTTGTTCTCAGTCG
GCCATGCGAAGGCCATGTTAATGCTACTCCTTGGCGTCCTAGCCACGACG
CAAGCATTCCTCATCCCCTCGGCGCCCTTCACCTTGTCATCGTCGACGTT
GGCGCCATTGTCTTCAGAAAAAAACGAGGGAACCGTCGAGGTGGCTGAGC
GCGTCATCACTGTGTCCGACTCCGCTCTCGAGCATTTGAAAGACCTTCGC
ACAAAGCAAGGCGTCGATCACCTTTATCTTAGGATGGGTGTCCGATCGGG
TGGGTGCTCTGGCATGTCGTATGTCTTAGATGTGATGAAGAAGGAGGACG
TCACGGAGGAGGACCACATCGAGGCGTACGACGAACACGACTTCTCCTGC
GTCGTCGACCCCAAGAGCCTGTTGTATTTGTTTGGCCTGCGTCTGGACTT
TAAGGACCAATTGATTGGGGGGGGCTTTGCGTTTCTCAACCCGAATGCCC
AGGAGAGCTGTGGGTGCGGGTCCTCTTTTGGGGTCTAAATGCATCGTCCC
TTCGCCTTGTTCTCAGTCGGCCATGCGAAGGCCATGTTAATGCTACTCCT
TGGCGTCCTAGCCACGACGCAAGCATTCCTCATCCCCTCGGCGCCCTTCA
CCTTGTCATCGTCGACGTTGGCGCCATTGTCTTCAGAAAAAAACGAGGGA
ACCGTCGAGGTGGCTGAGCGCGTCATCACTGTGTCCGACTCCGCTCTCGA
GCATTTGAAAGACCTTCGCACAAAGCAAGGCGTCGATCACCTTTATCTTA
GGATGGGTGTCCGATCGGGTGGGTGCTCTGGCATGTCGTATGTCTTAGAT
GTGATGAAGAAGGAGGACGTCACGGAGGAGGACCACATCGAGGCGTACGA
CGAACACGACTTCTCCTGCGTCGTCGACCCCAAGAGCCTGTTGTATTTGT
TTGGCCTGCGTCTGGACTTTAAGGACCAATTGATTGGGGGGGGCTTTGCG
TTTCTCAACCCGAATGCCCAGGAGAGCTGTGGGTGCGGGTCCTCTTTTGG
GGTCTAA back to top
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