jgi.p|Nanoce1779_2|596559, mRNA_6856 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596559
Unique Name	mRNA_6856
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1028
Alignment location	scaffold_17:271365..272698 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596645
Track	FilteredModels2
ProteinId	596559

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:271365..272698 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596559	gene_6856	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596559	mRNA_6856-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6856	CDS_6856	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:271365..272698+
coding sequence from alignment at scaffold_17:271365..272698+

mRNA sequence

>mRNA_6856 ID=mRNA_6856|Name=jgi.p|Nanoce1779_2|596559|organism=Nannochloropsis oceanica|type=mRNA|length=1028bp
ACAGCTCCAAGTAACTATGGAAATCAAAACCACCGCCTTCTTGGTTGCCC
TCCTGGCCGCCTCGCCCTACATTTTGGAGCTCACGACCCGCGCTGCCTAC
CCTGTGCCCGCTCCCGGCGGTGGCGTTGTCTTAACTGGGGCCTCGACAGG
TATCGGCGCACACGCTGCCCACAGCCTGGCCGAGGCTGGCTTCTTGGTGT
TCGCTGGCGTACGAAAAGAGGCGGACGGGGAAGCACTCAAGGCCAATGCT
CCTACCCCGGAGGCCCGTGAGCATATTGTACCGATTATACTTGACGTGAC
GAAGCAAGATCAGATTGATGCGGCTGTGAAGATCGTCAATAGCACATTGA
CCGCCAAAGGGGGGGTGCCCTTGGTAGGTTTGGTGAATAACGCAGGGGTT
GGAGGAGGGATGAAACCGGTAGAGTTCGAGAATATGGAGGATTTGAGGAA
TTTGTTTGATGTGAACTATTTTGGGGCTGTCTCGACGACAAAGGCCTTTC
TTTCCCTCCTCCGTGATGGAAAAGGAAGGGTGATTAACATCAGCAGCATG
GCTGGGCTGTTTTCCGCACCCATGATGATGAGCTATTGCGGGAGTAAGTT
TGCATTGGAAGCCTTCTCGGATACGTTGAGAGTGGAGGTGCAGAAGCATG
GTGTGTCGGTCTCAGTGGTAGAGCCCGCCTATGTCCAGAGTGCCATTTTC
GGTAAAAACGACGCGGCAATGGCGAAAATCAAGGAGAGGGCTGGGTCGCA
GATCGATAAATTGTATGGGCACGTCAGTGCCCGCCCCGAGTACTTTCAAC
AGTGCGTGGCCAAGGCCAGCCCCCCGTCTGTGACGAGCGACGCCATACTG
CATGCACTAACCTCGAAGTACCCACAGACCCGCTATGTGGTGGCCAATGT
AGACGGGAAACCAGCCAAGGTACTCGGGTGGGTGGTGTGGTTGCTGAATG
ATCGATTGAGGGATAGGATGGTAGTGCGTAGCGTCATTGACAGGTCCAAG
GCGCGGCGCGTGTGAGGGGGCGAAGGAG

protein sequence of jgi.p|Nanoce1779_2|596559

>mRNA_6856-protein ID=mRNA_6856-protein|Name=jgi.p|Nanoce1779_2|596559|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MEIKTTAFLVALLAASPYILELTTRAAYPVPAPGGGVVLTGASTGIGAHA
AHSLAEAGFLVFAGVRKEADGEALKANAPTPEAREHIVPIILDVTKQDQI
DAAVKIVNSTLTAKGGVPLVGLVNNAGVGGGMKPVEFENMEDLRNLFDVN
YFGAVSTTKAFLSLLRDGKGRVINISSMAGLFSAPMMMSYCGSKFALEAF
SDTLRVEVQKHGVSVSVVEPAYVQSAIFGKNDAAMAKIKERAGSQIDKLY
GHVSARPEYFQQCVAKASPPSVTSDAILHALTSKYPQTRYVVANVDGKPA
KVLGWVVWLLNDRLRDRMVVRSVIDRSKARRV*

mRNA from alignment at scaffold_17:271365..272698+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6856 ID=mRNA_6856|Name=jgi.p|Nanoce1779_2|596559|organism=Nannochloropsis oceanica|type=mRNA|length=1334bp|location=Sequence derived from alignment at scaffold_17:271365..272698+ (Nannochloropsis oceanica)
ACAGCTCCAAGTAACTATGGAAATCAAAACCACCGCCTTCTTGGTTGCCC
TCCTGGCCGCCTCGCCCTACATTTTGGAGCTCACGACCCGCGCTGCCTAC
CCTGTGCCCGCTCCCGGCGGTGGCGTTGTCTTAACTGGGGCCTCGACAGG
TATCGGCGCACACGCTGCCCACAGCCTGGCCGAGGCTGGCTTCTTGGTGT
TCGCTGGCGTACGAAAAGAGGCGGACGGGGAAGCACTCAAGGCCAATGCT
CCTACCCCGGAGGCCCGTGAGCATATTGTACCGATTATACTTGACGTGAC
GAAGCAAGATCAGATTGATGCGGCTGTGAAGATCGTCAATAGCACATTGA
CCGCCAAAGGGGGGGTGCCCTTGGTAGGTTTGGTGAATAACGCAGGGGTT
GGAGGAGGGATGAAACCGGTAGAGTTCGAGAATATGGAGGATTTGAGGAA
TTTGTTTGATGTGAACTATTTTGGGGCTGTCTCGACGACAAAGGCCTTTC
TTTCCCTCCTCCGTGATGGAAAAGGAAGGGTGATTAACATCAGCAGCATG
GCTGGGCTGTTTTCCGCACCCATGATGATGAGCTATTGCGGGAGTAAGTT
TGCATTGGAAGCCTTCTCGGATACGTTGAGAGTGGAGGTGCAGAAGCATG
GTGTGTCGGTCTCAGTGGTAGAGCCCGCCTATGTCCAGAGTGCCATTTTC
GGTAAAAACGACGCGGCAATGGCGAAAATCAAGGAGAGGGCTGGGTCGCA
GGTAAGTGTATGAACGTGTCTGTGTGGCCAAATCATCTCGCTTGAATCTT
ACTTGGGCTTTGCTTTTGATTGTGTACCTGTAACTCAACCTGTGTGTCTC
TCTCTCCCAACTCACCTAATTGCCTACCTTCTCCTCACTCCCTAACTCCC
TCCATCCTCCTCACTCCCTCACTCCCTCCCTTTAACCACTCTGCTTCCTC
GAAGATCGATAAATTGTATGGGCACGTCAGTGCCCGCCCCGAGTACTTTC
AACAGTGCGTGGCCAAGGCCAGCCCCCCGTCTGTGACGAGCGACGCCATA
CTGCATGCACTAACCTCGAAGTACCCACAGACCCGCTATGTGGTGGCCAA
TGTAGACGGTACGTCGAACCCCCTCTTTCTCTTCTTTCCCTCCCTCCCAC
TGTATTTCGAGAGACACACTCTCCCTCCTCTCACAAACACCTTCTCCATT
TTTCTTTCCAGGGAAACCAGCCAAGGTACTCGGGTGGGTGGTGTGGTTGC
TGAATGATCGATTGAGGGATAGGATGGTAGTGCGTAGCGTCATTGACAGG
TCCAAGGCGCGGCGCGTGTGAGGGGGCGAAGGAG

Coding sequence (CDS) from alignment at scaffold_17:271365..272698+

>mRNA_6856 ID=mRNA_6856|Name=jgi.p|Nanoce1779_2|596559|organism=Nannochloropsis oceanica|type=CDS|length=2997bp|location=Sequence derived from alignment at scaffold_17:271365..272698+ (Nannochloropsis oceanica)
ATGGAAATCAAAACCACCGCCTTCTTGGTTGCCCTCCTGGCCGCCTCGCC
CTACATTTTGGAGCTCACGACCCGCGCTGCCTACCCTGTGCCCGCTCCCG
GCGGTGGCGTTGTCTTAACTGGGGCCTCGACAGGTATCGGCGCACACGCT
GCCCACAGCCTGGCCGAGGCTGGCTTCTTGGTGTTCGCTGGCGTACGAAA
AGAGGCGGACGGGGAAGCACTCAAGGCCAATGCTCCTACCCCGGAGGCCC
GTGAGCATATTGTACCGATTATACTTGACGTGACGAAGCAAGATCAGATT
GATGCGGCTGTGAAGATCGTCAATAGCACATTGACCGCCAAAGGGGGGGT
GCCCTTGGTAGGTTTGGTGAATAACGCAGGGGTTGGAGGAGGGATGAAAC
CGGTAGAGTTCGAGAATATGGAGGATTTGAGGAATTTGTTTGATGTGAAC
TATTTTGGGGCTGTCTCGACGACAAAGGCCTTTCTTTCCCTCCTCCGTGA
TGGAAAAGGAAGGGTGATTAACATCAGCAGCATGGCTGGGCTGTTTTCCG
CACCCATGATGATGAGCTATTGCGGGAGTAAGTTTGCATTGGAAGCCTTC
TCGGATACGTTGAGAGTGGAGGTGCAGAAGCATGGTGTGTCGGTCTCAGT
GGTAGAGCCCGCCTATGTCCAGAGTGCCATTTTCGGTAAAAACGACGCGG
CAATGGCGAAAATCAAGGAGAGGGCTGGGTCGCAGATCGATAAATTGTAT
GGGCACGTCAGTGCCCGCCCCGAGTACTTTCAACAGTGCGTGGCCAAGGC
CAGCCCCCCGTCTGTGACGAGCGACGCCATACTGCATGCACTAACCTCGA
AGTACCCACAGACCCGCTATGTGGTGGCCAATGTAGACGGGAAACCAGCC
AAGGTACTCGGGTGGGTGGTGTGGTTGCTGAATGATCGATTGAGGGATAG
GATGGTAGTGCGTAGCGTCATTGACAGGTCCAAGGCGCGGCGCGTGTGAA
TGGAAATCAAAACCACCGCCTTCTTGGTTGCCCTCCTGGCCGCCTCGCCC
TACATTTTGGAGCTCACGACCCGCGCTGCCTACCCTGTGCCCGCTCCCGG
CGGTGGCGTTGTCTTAACTGGGGCCTCGACAGGTATCGGCGCACACGCTG
CCCACAGCCTGGCCGAGGCTGGCTTCTTGGTGTTCGCTGGCGTACGAAAA
GAGGCGGACGGGGAAGCACTCAAGGCCAATGCTCCTACCCCGGAGGCCCG
TGAGCATATTGTACCGATTATACTTGACGTGACGAAGCAAGATCAGATTG
ATGCGGCTGTGAAGATCGTCAATAGCACATTGACCGCCAAAGGGGGGGTG
CCCTTGGTAGGTTTGGTGAATAACGCAGGGGTTGGAGGAGGGATGAAACC
GGTAGAGTTCGAGAATATGGAGGATTTGAGGAATTTGTTTGATGTGAACT
ATTTTGGGGCTGTCTCGACGACAAAGGCCTTTCTTTCCCTCCTCCGTGAT
GGAAAAGGAAGGGTGATTAACATCAGCAGCATGGCTGGGCTGTTTTCCGC
ACCCATGATGATGAGCTATTGCGGGAGTAAGTTTGCATTGGAAGCCTTCT
CGGATACGTTGAGAGTGGAGGTGCAGAAGCATGGTGTGTCGGTCTCAGTG
GTAGAGCCCGCCTATGTCCAGAGTGCCATTTTCGGTAAAAACGACGCGGC
AATGGCGAAAATCAAGGAGAGGGCTGGGTCGCAGATCGATAAATTGTATG
GGCACGTCAGTGCCCGCCCCGAGTACTTTCAACAGTGCGTGGCCAAGGCC
AGCCCCCCGTCTGTGACGAGCGACGCCATACTGCATGCACTAACCTCGAA
GTACCCACAGACCCGCTATGTGGTGGCCAATGTAGACGGGAAACCAGCCA
AGGTACTCGGGTGGGTGGTGTGGTTGCTGAATGATCGATTGAGGGATAGG
ATGGTAGTGCGTAGCGTCATTGACAGGTCCAAGGCGCGGCGCGTGTGAAT
GGAAATCAAAACCACCGCCTTCTTGGTTGCCCTCCTGGCCGCCTCGCCCT
ACATTTTGGAGCTCACGACCCGCGCTGCCTACCCTGTGCCCGCTCCCGGC
GGTGGCGTTGTCTTAACTGGGGCCTCGACAGGTATCGGCGCACACGCTGC
CCACAGCCTGGCCGAGGCTGGCTTCTTGGTGTTCGCTGGCGTACGAAAAG
AGGCGGACGGGGAAGCACTCAAGGCCAATGCTCCTACCCCGGAGGCCCGT
GAGCATATTGTACCGATTATACTTGACGTGACGAAGCAAGATCAGATTGA
TGCGGCTGTGAAGATCGTCAATAGCACATTGACCGCCAAAGGGGGGGTGC
CCTTGGTAGGTTTGGTGAATAACGCAGGGGTTGGAGGAGGGATGAAACCG
GTAGAGTTCGAGAATATGGAGGATTTGAGGAATTTGTTTGATGTGAACTA
TTTTGGGGCTGTCTCGACGACAAAGGCCTTTCTTTCCCTCCTCCGTGATG
GAAAAGGAAGGGTGATTAACATCAGCAGCATGGCTGGGCTGTTTTCCGCA
CCCATGATGATGAGCTATTGCGGGAGTAAGTTTGCATTGGAAGCCTTCTC
GGATACGTTGAGAGTGGAGGTGCAGAAGCATGGTGTGTCGGTCTCAGTGG
TAGAGCCCGCCTATGTCCAGAGTGCCATTTTCGGTAAAAACGACGCGGCA
ATGGCGAAAATCAAGGAGAGGGCTGGGTCGCAGATCGATAAATTGTATGG
GCACGTCAGTGCCCGCCCCGAGTACTTTCAACAGTGCGTGGCCAAGGCCA
GCCCCCCGTCTGTGACGAGCGACGCCATACTGCATGCACTAACCTCGAAG
TACCCACAGACCCGCTATGTGGTGGCCAATGTAGACGGGAAACCAGCCAA
GGTACTCGGGTGGGTGGTGTGGTTGCTGAATGATCGATTGAGGGATAGGA
TGGTAGTGCGTAGCGTCATTGACAGGTCCAAGGCGCGGCGCGTGTGA

Synonyms

Publications