jgi.p|Nanoce1779_2|596557, mRNA_6855 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596557
Unique NamemRNA_6855
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2299
Alignment locationscaffold_17:268717..271015 -

Link to JBrowse

Properties
Property NameValue
TranscriptId596643
TrackFilteredModels2
ProteinId596557
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:268717..271015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596557gene_6855Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596557mRNA_6855-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6855CDS_6855Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6855 ID=mRNA_6855|Name=jgi.p|Nanoce1779_2|596557|organism=Nannochloropsis oceanica|type=mRNA|length=2299bp
AGATACATCCTCCCTACCGTACAGGCAGCCCTCACCATTGCATGGGATCG
TCGCGCACTAAGTGCTGATGGTCTACTTCTCCTCCTCTCCCGGCTGCCAT
CCTGCCCAGTGCTGCTGCTCTCGTCGTCGTCCTTTCCCTATCTCAAGTAT
CGTCCTCTTCCTCACCACCATGCTGGGCACTGTGGCCGTGCGCAATACTC
TGGCGGTAATGCGCAGAAGACCCCACACTTCCACCACCACCGCTATTACC
TTCATCCGACCCACTACCCCAGCAGCACTAAGACCAACTCTCCGTCCTTT
CACCTCTAACACACCCTCCCGAAGCACCCCCCGCCAGCCTACCCGTCGCA
CGAGTCCCCTCGCCAGCAACACCCCTGCCGCAATTACGGCTGCATTCCCC
GAAATCAGCTACGCCCAATCGGACCTACCTACACAGGGGGAGAATGCCGT
GCCGGCTGTGGGGAAGTATACATGCATCATGTCGCAAACAGAGCTGCACC
GCGATTTCCAAGACATGAACAAACTCAGCGCTGCCGACGCAGGGAAAGTG
GTGTGGGTCCGTGCACGGATCGGAAACGTGCGTGCAAAAGGAAATTCATG
CTTTATTGTCTTAAGACAGGGCCCTTTTGATACTCTCCAGGCATGTTATT
TTAAGGATAAAAGTGACCCGGAGCGGAGCAAGGCCATGCTCAAATTCATG
GGGGGGCTGACGAGTGAGACAGTGGTGGATATACAGGGGACCTTGGCAAC
AGCCAACGTGAAGAGTTGTTCGGTCAATGACGTTGAATTATCGATTTCTC
GAGTGTACGTTGTCTCGGATGCTGGTGCGATTCTGCCTTTTCAGTTGGAG
GATGCCGGGAGACCCGAGGTCGAGGTGGAGGCCAGTCAGGGGACCGAGCG
ACCTTTCCCGCGGATAGGACAGGAACTAAGGTTGGACAATCGATGGTTGG
ATTTAAGGGTACCGGCGAATAATTGTATTATGAGGGTTCAGTCGGGGATT
TGTCAGTTGTTTCGGGAGAGCCTGTACGAGCAGGGTTTCGTGGAGATCCA
CACGCCGAAGCTGATTGGGGGGGAGAGCGAGGGAGGGGCGGGAGTATTTC
GCACGGATTACTTCGGGCGTCCTGCGTGTTTGGCACAGTCTCCGCAGCTT
TATAAGCAGATGGCGATGAGTGCGGATTTGGGGAGGGTGTTTGAGATAGG
GCCCGTCTTCAGGGCTGAGAACAGTAATACCCGCAGACATCTATGTGAGT
TTACCGGGTTGGACCTCGAGATGGGGATCGAAGAACATTACAACGAGGTA
TTGCTCGTGACTCATCGGATGTTTAAGCACATCTTTGAGGGACTGGAGAA
GAGGTGGGCCAAGGAGTTGGCGGTGATTAGAGAACAGTACGCATCGGAGC
CCGTGGCTTTCACCGACGACCCGTGTGTATTGCACTGGCCCGAGGCGATG
AGCTTATTGAGGGGCGAAGGGGGAATGGAGGACGTGGATGATTACGACGA
TTTGACCGGGGCGCAGGAATTGAAGCTGGGCGAATTGGTGAAGAAGAAGT
ATGGCGCAGATTTCTTTATCCTGGACAAATACCCTTCGGCGATTCGGCCG
TTTTACACCATGCCATGTCCGGAGAATGAAAAATTCAGTAATTCGTACGA
TATGTTTTTGAGGGGGCAGGAGATTTGTAGTGGTGCTCAGCGAATTCATG
ACCCCGAGTTGTTGACGAGGACCATTGAAGCCAAGGGCGTGCCAGTGGAG
CCGTTGGAGAGTTATATTAATTCATTTCGGCATGGTGTCCCACCGCATGG
CGGGGCGGGGATTGGGTTGGAGCGGGTGGTGTTTTTGTACTTGGGCTTGG
ATAATGTACGCAAGGCGTCTATGTTCCCCCGAGATCCGAACAGGTGTGAG
CCTTAAGGAGTGAAATTTCTAAGGAGTGAGATGAAGGACTATAGGACATT
CATTTGTTGGTGGATGAGGAGGAAGTGGAGTCACCTTGCCACGAGGAAGG
AGAGGACAGAGAACAAAGAAGAAAAGCGCGATCGGTAAATTCCATGAATC
GGTGCCTATTAAATTCGGATTTCAACAACTTACGACTCTGCACAGATTTA
ATGTACGAATTGATTCAAGTTTCTCGCAAAAATGGCGATGAGGAAAGTCT
TCCGCTGACCACTTGCCCTCGTACACCAAAACCCTAGAAACCGAAAAAGT
GAATTTGACGAGCTTTCAAATAATTATCAAGATAAAGCGTCCAACAAGCA
ATAGATGATCATAGCACACATCGAGGCACAGCGAAGCGCAGCTAAGTGG
back to top

protein sequence of jgi.p|Nanoce1779_2|596557

>mRNA_6855-protein ID=mRNA_6855-protein|Name=jgi.p|Nanoce1779_2|596557|organism=Nannochloropsis oceanica|type=polypeptide|length=613bp
MVYFSSSPGCHPAQCCCSRRRPFPISSIVLFLTTMLGTVAVRNTLAVMRR
RPHTSTTTAITFIRPTTPAALRPTLRPFTSNTPSRSTPRQPTRRTSPLAS
NTPAAITAAFPEISYAQSDLPTQGENAVPAVGKYTCIMSQTELHRDFQDM
NKLSAADAGKVVWVRARIGNVRAKGNSCFIVLRQGPFDTLQACYFKDKSD
PERSKAMLKFMGGLTSETVVDIQGTLATANVKSCSVNDVELSISRVYVVS
DAGAILPFQLEDAGRPEVEVEASQGTERPFPRIGQELRLDNRWLDLRVPA
NNCIMRVQSGICQLFRESLYEQGFVEIHTPKLIGGESEGGAGVFRTDYFG
RPACLAQSPQLYKQMAMSADLGRVFEIGPVFRAENSNTRRHLCEFTGLDL
EMGIEEHYNEVLLVTHRMFKHIFEGLEKRWAKELAVIREQYASEPVAFTD
DPCVLHWPEAMSLLRGEGGMEDVDDYDDLTGAQELKLGELVKKKYGADFF
ILDKYPSAIRPFYTMPCPENEKFSNSYDMFLRGQEICSGAQRIHDPELLT
RTIEAKGVPVEPLESYINSFRHGVPPHGGAGIGLERVVFLYLGLDNVRKA
SMFPRDPNRCEP*
back to top

mRNA from alignment at scaffold_17:268717..271015-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6855 ID=mRNA_6855|Name=jgi.p|Nanoce1779_2|596557|organism=Nannochloropsis oceanica|type=mRNA|length=2299bp|location=Sequence derived from alignment at scaffold_17:268717..271015- (Nannochloropsis oceanica)
AGATACATCCTCCCTACCGTACAGGCAGCCCTCACCATTGCATGGGATCG
TCGCGCACTAAGTGCTGATGGTCTACTTCTCCTCCTCTCCCGGCTGCCAT
CCTGCCCAGTGCTGCTGCTCTCGTCGTCGTCCTTTCCCTATCTCAAGTAT
CGTCCTCTTCCTCACCACCATGCTGGGCACTGTGGCCGTGCGCAATACTC
TGGCGGTAATGCGCAGAAGACCCCACACTTCCACCACCACCGCTATTACC
TTCATCCGACCCACTACCCCAGCAGCACTAAGACCAACTCTCCGTCCTTT
CACCTCTAACACACCCTCCCGAAGCACCCCCCGCCAGCCTACCCGTCGCA
CGAGTCCCCTCGCCAGCAACACCCCTGCCGCAATTACGGCTGCATTCCCC
GAAATCAGCTACGCCCAATCGGACCTACCTACACAGGGGGAGAATGCCGT
GCCGGCTGTGGGGAAGTATACATGCATCATGTCGCAAACAGAGCTGCACC
GCGATTTCCAAGACATGAACAAACTCAGCGCTGCCGACGCAGGGAAAGTG
GTGTGGGTCCGTGCACGGATCGGAAACGTGCGTGCAAAAGGAAATTCATG
CTTTATTGTCTTAAGACAGGGCCCTTTTGATACTCTCCAGGCATGTTATT
TTAAGGATAAAAGTGACCCGGAGCGGAGCAAGGCCATGCTCAAATTCATG
GGGGGGCTGACGAGTGAGACAGTGGTGGATATACAGGGGACCTTGGCAAC
AGCCAACGTGAAGAGTTGTTCGGTCAATGACGTTGAATTATCGATTTCTC
GAGTGTACGTTGTCTCGGATGCTGGTGCGATTCTGCCTTTTCAGTTGGAG
GATGCCGGGAGACCCGAGGTCGAGGTGGAGGCCAGTCAGGGGACCGAGCG
ACCTTTCCCGCGGATAGGACAGGAACTAAGGTTGGACAATCGATGGTTGG
ATTTAAGGGTACCGGCGAATAATTGTATTATGAGGGTTCAGTCGGGGATT
TGTCAGTTGTTTCGGGAGAGCCTGTACGAGCAGGGTTTCGTGGAGATCCA
CACGCCGAAGCTGATTGGGGGGGAGAGCGAGGGAGGGGCGGGAGTATTTC
GCACGGATTACTTCGGGCGTCCTGCGTGTTTGGCACAGTCTCCGCAGCTT
TATAAGCAGATGGCGATGAGTGCGGATTTGGGGAGGGTGTTTGAGATAGG
GCCCGTCTTCAGGGCTGAGAACAGTAATACCCGCAGACATCTATGTGAGT
TTACCGGGTTGGACCTCGAGATGGGGATCGAAGAACATTACAACGAGGTA
TTGCTCGTGACTCATCGGATGTTTAAGCACATCTTTGAGGGACTGGAGAA
GAGGTGGGCCAAGGAGTTGGCGGTGATTAGAGAACAGTACGCATCGGAGC
CCGTGGCTTTCACCGACGACCCGTGTGTATTGCACTGGCCCGAGGCGATG
AGCTTATTGAGGGGCGAAGGGGGAATGGAGGACGTGGATGATTACGACGA
TTTGACCGGGGCGCAGGAATTGAAGCTGGGCGAATTGGTGAAGAAGAAGT
ATGGCGCAGATTTCTTTATCCTGGACAAATACCCTTCGGCGATTCGGCCG
TTTTACACCATGCCATGTCCGGAGAATGAAAAATTCAGTAATTCGTACGA
TATGTTTTTGAGGGGGCAGGAGATTTGTAGTGGTGCTCAGCGAATTCATG
ACCCCGAGTTGTTGACGAGGACCATTGAAGCCAAGGGCGTGCCAGTGGAG
CCGTTGGAGAGTTATATTAATTCATTTCGGCATGGTGTCCCACCGCATGG
CGGGGCGGGGATTGGGTTGGAGCGGGTGGTGTTTTTGTACTTGGGCTTGG
ATAATGTACGCAAGGCGTCTATGTTCCCCCGAGATCCGAACAGGTGTGAG
CCTTAAGGAGTGAAATTTCTAAGGAGTGAGATGAAGGACTATAGGACATT
CATTTGTTGGTGGATGAGGAGGAAGTGGAGTCACCTTGCCACGAGGAAGG
AGAGGACAGAGAACAAAGAAGAAAAGCGCGATCGGTAAATTCCATGAATC
GGTGCCTATTAAATTCGGATTTCAACAACTTACGACTCTGCACAGATTTA
ATGTACGAATTGATTCAAGTTTCTCGCAAAAATGGCGATGAGGAAAGTCT
TCCGCTGACCACTTGCCCTCGTACACCAAAACCCTAGAAACCGAAAAAGT
GAATTTGACGAGCTTTCAAATAATTATCAAGATAAAGCGTCCAACAAGCA
ATAGATGATCATAGCACACATCGAGGCACAGCGAAGCGCAGCTAAGTGG
back to top

Coding sequence (CDS) from alignment at scaffold_17:268717..271015-

>mRNA_6855 ID=mRNA_6855|Name=jgi.p|Nanoce1779_2|596557|organism=Nannochloropsis oceanica|type=CDS|length=1839bp|location=Sequence derived from alignment at scaffold_17:268717..271015- (Nannochloropsis oceanica)
ATGGTCTACTTCTCCTCCTCTCCCGGCTGCCATCCTGCCCAGTGCTGCTG
CTCTCGTCGTCGTCCTTTCCCTATCTCAAGTATCGTCCTCTTCCTCACCA
CCATGCTGGGCACTGTGGCCGTGCGCAATACTCTGGCGGTAATGCGCAGA
AGACCCCACACTTCCACCACCACCGCTATTACCTTCATCCGACCCACTAC
CCCAGCAGCACTAAGACCAACTCTCCGTCCTTTCACCTCTAACACACCCT
CCCGAAGCACCCCCCGCCAGCCTACCCGTCGCACGAGTCCCCTCGCCAGC
AACACCCCTGCCGCAATTACGGCTGCATTCCCCGAAATCAGCTACGCCCA
ATCGGACCTACCTACACAGGGGGAGAATGCCGTGCCGGCTGTGGGGAAGT
ATACATGCATCATGTCGCAAACAGAGCTGCACCGCGATTTCCAAGACATG
AACAAACTCAGCGCTGCCGACGCAGGGAAAGTGGTGTGGGTCCGTGCACG
GATCGGAAACGTGCGTGCAAAAGGAAATTCATGCTTTATTGTCTTAAGAC
AGGGCCCTTTTGATACTCTCCAGGCATGTTATTTTAAGGATAAAAGTGAC
CCGGAGCGGAGCAAGGCCATGCTCAAATTCATGGGGGGGCTGACGAGTGA
GACAGTGGTGGATATACAGGGGACCTTGGCAACAGCCAACGTGAAGAGTT
GTTCGGTCAATGACGTTGAATTATCGATTTCTCGAGTGTACGTTGTCTCG
GATGCTGGTGCGATTCTGCCTTTTCAGTTGGAGGATGCCGGGAGACCCGA
GGTCGAGGTGGAGGCCAGTCAGGGGACCGAGCGACCTTTCCCGCGGATAG
GACAGGAACTAAGGTTGGACAATCGATGGTTGGATTTAAGGGTACCGGCG
AATAATTGTATTATGAGGGTTCAGTCGGGGATTTGTCAGTTGTTTCGGGA
GAGCCTGTACGAGCAGGGTTTCGTGGAGATCCACACGCCGAAGCTGATTG
GGGGGGAGAGCGAGGGAGGGGCGGGAGTATTTCGCACGGATTACTTCGGG
CGTCCTGCGTGTTTGGCACAGTCTCCGCAGCTTTATAAGCAGATGGCGAT
GAGTGCGGATTTGGGGAGGGTGTTTGAGATAGGGCCCGTCTTCAGGGCTG
AGAACAGTAATACCCGCAGACATCTATGTGAGTTTACCGGGTTGGACCTC
GAGATGGGGATCGAAGAACATTACAACGAGGTATTGCTCGTGACTCATCG
GATGTTTAAGCACATCTTTGAGGGACTGGAGAAGAGGTGGGCCAAGGAGT
TGGCGGTGATTAGAGAACAGTACGCATCGGAGCCCGTGGCTTTCACCGAC
GACCCGTGTGTATTGCACTGGCCCGAGGCGATGAGCTTATTGAGGGGCGA
AGGGGGAATGGAGGACGTGGATGATTACGACGATTTGACCGGGGCGCAGG
AATTGAAGCTGGGCGAATTGGTGAAGAAGAAGTATGGCGCAGATTTCTTT
ATCCTGGACAAATACCCTTCGGCGATTCGGCCGTTTTACACCATGCCATG
TCCGGAGAATGAAAAATTCAGTAATTCGTACGATATGTTTTTGAGGGGGC
AGGAGATTTGTAGTGGTGCTCAGCGAATTCATGACCCCGAGTTGTTGACG
AGGACCATTGAAGCCAAGGGCGTGCCAGTGGAGCCGTTGGAGAGTTATAT
TAATTCATTTCGGCATGGTGTCCCACCGCATGGCGGGGCGGGGATTGGGT
TGGAGCGGGTGGTGTTTTTGTACTTGGGCTTGGATAATGTACGCAAGGCG
TCTATGTTCCCCCGAGATCCGAACAGGTGTGAGCCTTAA
back to top
Synonyms
Publications