jgi.p|Nanoce1779_2|640691, mRNA_6854 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|640691
Unique NamemRNA_6854
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length552
Alignment locationscaffold_17:267574..268125 -

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Properties
Property NameValue
TranscriptId640777
TrackFilteredModels2
ProteinId640691
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:267574..268125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640691gene_6854Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6854CDS_6854Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640691mRNA_6854-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6854 ID=mRNA_6854|Name=jgi.p|Nanoce1779_2|640691|organism=Nannochloropsis oceanica|type=mRNA|length=552bp
ATGGCCGTGCTGCTCGCCCGCGGAGCAAACCCCTCAGTGGTGATTGAGGA
TGGTTTGACCGTGCTAATGTGGCAAACATTACACGGAGATGTAGGATGTA
TTGGAATCCTTTTGAAAGACTCGCGATTCAAAGCGTTGGTGGACGCTATG
ACGCAGAAGCTGGGGATGAACGTGACTGCCCTTCATCTCGTGTGTGAGCG
CCTCGACATCAACCTTCACGAGAGGAGACGCATTACCGAATTGCTTTTGG
AGGCTGGCGCTGATCCGAATCTCCTATGCCAATGGAGTGATTCCACATCT
ACAGTGGTGAATCTGTGGACCTATGGCCATGCTGTGCCACCCAGCTACGA
CCACCCCGGTTATTGCATTTTCTCCGAGTCCGACTTGCGGCAGTGGGTGG
TAGACAACCCCGGGCATGTCAACAAGCTGGACCGCACGGGCTACACACTT
AAGTGCAGGGCATCACTGGGTGTGTACAATTGCAAGGGTCAAGCAATCAA
TGCCGTGGGCTATACATATATGGCAGTATCAATCTTTGTTTGTGAGGCTT
AA
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protein sequence of jgi.p|Nanoce1779_2|640691

>mRNA_6854-protein ID=mRNA_6854-protein|Name=jgi.p|Nanoce1779_2|640691|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MAVLLARGANPSVVIEDGLTVLMWQTLHGDVGCIGILLKDSRFKALVDAM
TQKLGMNVTALHLVCERLDINLHERRRITELLLEAGADPNLLCQWSDSTS
TVVNLWTYGHAVPPSYDHPGYCIFSESDLRQWVVDNPGHVNKLDRTGYTL
KCRASLGVYNCKGQAINAVGYTYMAVSIFVCEA*
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mRNA from alignment at scaffold_17:267574..268125-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6854 ID=mRNA_6854|Name=jgi.p|Nanoce1779_2|640691|organism=Nannochloropsis oceanica|type=mRNA|length=552bp|location=Sequence derived from alignment at scaffold_17:267574..268125- (Nannochloropsis oceanica)
ATGGCCGTGCTGCTCGCCCGCGGAGCAAACCCCTCAGTGGTGATTGAGGA
TGGTTTGACCGTGCTAATGTGGCAAACATTACACGGAGATGTAGGATGTA
TTGGAATCCTTTTGAAAGACTCGCGATTCAAAGCGTTGGTGGACGCTATG
ACGCAGAAGCTGGGGATGAACGTGACTGCCCTTCATCTCGTGTGTGAGCG
CCTCGACATCAACCTTCACGAGAGGAGACGCATTACCGAATTGCTTTTGG
AGGCTGGCGCTGATCCGAATCTCCTATGCCAATGGAGTGATTCCACATCT
ACAGTGGTGAATCTGTGGACCTATGGCCATGCTGTGCCACCCAGCTACGA
CCACCCCGGTTATTGCATTTTCTCCGAGTCCGACTTGCGGCAGTGGGTGG
TAGACAACCCCGGGCATGTCAACAAGCTGGACCGCACGGGCTACACACTT
AAGTGCAGGGCATCACTGGGTGTGTACAATTGCAAGGGTCAAGCAATCAA
TGCCGTGGGCTATACATATATGGCAGTATCAATCTTTGTTTGTGAGGCTT
AA
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Coding sequence (CDS) from alignment at scaffold_17:267574..268125-

>mRNA_6854 ID=mRNA_6854|Name=jgi.p|Nanoce1779_2|640691|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_17:267574..268125- (Nannochloropsis oceanica)
ATGGCCGTGCTGCTCGCCCGCGGAGCAAACCCCTCAGTGGTGATTGAGGA
TGGTTTGACCGTGCTAATGTGGCAAACATTACACGGAGATGTAGGATGTA
TTGGAATCCTTTTGAAAGACTCGCGATTCAAAGCGTTGGTGGACGCTATG
ACGCAGAAGCTGGGGATGAACGTGACTGCCCTTCATCTCGTGTGTGAGCG
CCTCGACATCAACCTTCACGAGAGGAGACGCATTACCGAATTGCTTTTGG
AGGCTGGCGCTGATCCGAATCTCCTATGCCAATGGAGTGATTCCACATCT
ACAGTGGTGAATCTGTGGACCTATGGCCATGCTGTGCCACCCAGCTACGA
CCACCCCGGTTATTGCATTTTCTCCGAGTCCGACTTGCGGCAGTGGGTGG
TAGACAACCCCGGGCATGTCAACAAGCTGGACCGCACGGGCTACACACTT
AAGTGCAGGGCATCACTGGGTGTGTACAATTGCAAGGGTCAAGCAATCAA
TGCCGTGGGCTATACATATATGGCAGTATCAATCTTTGTTTGTGAGGCTT
AA
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Synonyms
Publications