jgi.p|Nanoce1779_2|530904, mRNA_6853 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|530904
Unique Name	mRNA_6853
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1707
Alignment location	scaffold_17:265477..267267 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	530990
Track	FilteredModels2
ProteinId	530904

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:265477..267267 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|530904	gene_6853	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|530904	mRNA_6853-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6853	CDS_6853	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:265477..267267+
coding sequence from alignment at scaffold_17:265477..267267+

mRNA sequence

>mRNA_6853 ID=mRNA_6853|Name=jgi.p|Nanoce1779_2|530904|organism=Nannochloropsis oceanica|type=mRNA|length=1707bp
ATGATCAGCAGCGCCCCCAGCACCAGCACCAACACAGGCATCAAAATTGG
CAGCAGTATCCCCAGTCGTGGGGGATTTATTTGGCTGTCGCGGTCTTTGT
CGTCCACCGCACCCACAAAACACAAGAAGCATACCCCTCAGCCCTTGAGC
AGCATCACGCACCCACACCCGCGAATAAATCGGCTGCTGCGCGAATATCT
GGCCAAGATGGAAGAGGGGCCACCGACTTCTAATTCTCTCCAGCCGCCTG
GCCAGGAGCAGCAAAAAATACCCCGGAAGGACCGTATATTTGTCAACAAC
GCAATCAACTTGGGCAAGGTGGACGTCTTAGGCTGGGATTACGATTACAC
GCTCGTGAGTTATACCGACAAGATGGAAGGCCTTATATACAGCATGGCCA
AGGATTATCTGATCGAGCACTCGGGCTACCCTACGGAGATGAAGACTCGT
CGCACGTACGACCCGCACTTTGCTATTCGCGGCCTTGCCGTGGACATGGA
TCGAGGGTGGCTGCTCAAGCTCAGTTATATCAACCAAATCGCGCTGCGGA
CTGTTTTCAATGGCCGACAGCGCTTGACAAAGCAAGAGGTGTTGGCTGAG
TACGGGGACAGCTCTCACATCTCGCCACAGTACCGAAACGAGCACTTGAA
GCCTCTTCTTGACTTGTTCTCCATGTCGCTGGCCTGCCTGCTCGCCGATG
TCCTCGACTATTTGAACAAATTAGACATCCACCACGACCGCCGCGCCGTC
GTAGAAGACGTAATGAAAGCTATTAACCACGTGCACTTGAGCGGAAACAT
GCACAAGGAAGTGGTCAAGGACCCGCCCACCTACATGATGCCCTCGCCCC
ACTTACGCGAGACCCTGACACGCTTCCGCGACGTGGGCAAAAAGCTATTT
CTGTGCTCCAACTCCAATTACGAATATGTGTCGGGGGGGCTTCGATTCCT
GATTGGAGATGATTGGCAGGAGTTTTTTGACGTGGTAATCGTGAGCGCGG
ACAAGCCGGGTTTCTATACCTCTGATCGACCATTCCGTCAGGTGGCACAG
AGCACGGGCAAGATTCGGTGGACGGAAGTGACCACGCTGGAGAAAGGCAA
GGTCTACTCACACGGCTCTTTGGATGGCTTGACAAAGCTGACGGGGTGGA
TGGGCCCGCGAGTGCTGTATATTGGGGATCAGATTTGGGCGGACTTGGTG
GGGGCTCGGCGGAACCAGGGGTGGCGCACAGGAGCGGTGATTCGGGAGTT
GGACCATGAATTGCTTGTGCAGCAATCGACAAAGTACCGGGCGCATGCCC
ATAAGGTGATAACTGTGACGGAGCTCTTGCGCTTGGTGCAAGAAGATATG
GAGAAGATTCGGACGGATGTTATTGTCTCGGATGGGTTGGAAAAGTATTT
GAGGCATCTCCAGACAGAAATGTCCAAGATGTTCAATGGTAATTTCGGCT
CTGTCTTTCGGGCAGAAGGAGAACCCACATTGTTTGCGTTTTCGCTACGG
CGGTACGCGGATCTGTATTTGAGTAAGCTCGAGAATTTTCGATTTTACTC
GCCCATGCATCGTTTCTACCCTCAACGAGGGATTTCAATGCCGCATGATC
CGTACATTCCGGCAATCACCCGCCCGCCTCCCTCTGCGGTGGAGGAGGAA
GGGGGTGGAGGGCGAGAAGGAGTGGAAGAGTCGAAAGGTTCAGAGGAGGG
GAGGTAA

protein sequence of jgi.p|Nanoce1779_2|530904

>mRNA_6853-protein ID=mRNA_6853-protein|Name=jgi.p|Nanoce1779_2|530904|organism=Nannochloropsis oceanica|type=polypeptide|length=569bp
MISSAPSTSTNTGIKIGSSIPSRGGFIWLSRSLSSTAPTKHKKHTPQPLS
SITHPHPRINRLLREYLAKMEEGPPTSNSLQPPGQEQQKIPRKDRIFVNN
AINLGKVDVLGWDYDYTLVSYTDKMEGLIYSMAKDYLIEHSGYPTEMKTR
RTYDPHFAIRGLAVDMDRGWLLKLSYINQIALRTVFNGRQRLTKQEVLAE
YGDSSHISPQYRNEHLKPLLDLFSMSLACLLADVLDYLNKLDIHHDRRAV
VEDVMKAINHVHLSGNMHKEVVKDPPTYMMPSPHLRETLTRFRDVGKKLF
LCSNSNYEYVSGGLRFLIGDDWQEFFDVVIVSADKPGFYTSDRPFRQVAQ
STGKIRWTEVTTLEKGKVYSHGSLDGLTKLTGWMGPRVLYIGDQIWADLV
GARRNQGWRTGAVIRELDHELLVQQSTKYRAHAHKVITVTELLRLVQEDM
EKIRTDVIVSDGLEKYLRHLQTEMSKMFNGNFGSVFRAEGEPTLFAFSLR
RYADLYLSKLENFRFYSPMHRFYPQRGISMPHDPYIPAITRPPPSAVEEE
GGGGREGVEESKGSEEGR*

mRNA from alignment at scaffold_17:265477..267267+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6853 ID=mRNA_6853|Name=jgi.p|Nanoce1779_2|530904|organism=Nannochloropsis oceanica|type=mRNA|length=1791bp|location=Sequence derived from alignment at scaffold_17:265477..267267+ (Nannochloropsis oceanica)
ATGATCAGCAGCGCCCCCAGCACCAGCACCAACACAGGCATCAAAATTGG
CAGCAGTATCCCCAGTCGTGGGGGATTTATTTGGCTGTCGCGGTCTTTGT
CGTCCACCGCACCCACAAAACACAAGAAGCATACCCCTCAGCCCTTGAGC
AGCATCACGCACCCACACCCGCGAATAAATCGGCTGCTGCGCGAATATCT
GGCCAAGATGGAAGAGGGGCCACCGACTTCTAATTCTCTCCAGCCGCCTG
GCCAGGAGCAGCAAAAAATACCCCGGAAGGACCGTATATTTGTCAACAAC
GCAATCAACTTGGGCAAGGTGGACGTCTTAGGCTGGGATTACGATTACAC
GCTCGTGAGTTATACCGACAAGATGGAAGGCCTTATATACAGCATGGCCA
AGGATTATCTGATCGAGCACTCGGGCTACCCTACGGAGATGAAGACTCGT
CGCACGTACGACCCGCACTTTGCTATTCGCGGCCTTGCCGTGGACATGGA
TCGAGGGTGGCTGCTCAAGCTCAGTTATATCAACCAAATCGCGCTGCGGA
CTGTTTTCAATGGCCGACAGCGCTTGACAAAGCAAGAGGTGTTGGCTGAG
TACGGGGACAGCTCTCACATCTCGCCACAGTACCGAAACGAGCACTTGAA
GCCTCTTCTTGACTTGTTCTCCATGTCGCTGGCCTGCCTGCTCGCCGATG
TCCTCGACTATTTGAACAAATTAGACATCCACCACGACCGCCGCGCCGTC
GTAGAAGACGTAATGAAAGCTATTAACCACGTGCACTTGAGCGGAAACAT
GCACAAGGAAGTGGTCAAGGACCCGCCCACCTACATGATGCCCTCGCCCC
ACTTACGCGAGACCCTGACACGCTTCCGCGACGTGGGCAAAAAGCTATTT
CTGTGCTCCAACTCCAATTACGAATATGTGTCGGGGGGGCTTCGATTCCT
GATTGGAGATGATTGGCAGGAGTTTTTTGACGTGGTAATCGTGAGCGCGG
ACAAGCCGGGTTTCTATACCTCTGATCGACCATTCCGTCAGGTGGCACAG
AGCACGGGCAAGATTCGGTGGACGGAAGTGACCACGCTGGAGAAAGGCAA
GGTCTACTCACACGGCTCTTTGGATGGCTTGACAAAGCTGACGGGGTGGA
TGGGCCCGCGAGTGCTGTATATTGGGGATCAGATTTGGGCGGACTTGGTG
GGGGCTCGGCGGAACCAGGGGTGGCGCACAGGAGCGGTGATTCGGGAGTT
GGACCATGAATTGCTTGTGCAGCAATCGACAAAGTACCGGGCGCATGCCC
ATAAGGTGATAACTGTGACGGAGCTCTTGCGCTTGGTGCAAGAAGATATG
GAGAAGATTCGGAGTGAGGCAACAGCAGCGGCGGCGAAAGCGAAAGTTGC
AGAGGGTGGGAAGGTGGGAGGGGCGGCGCCGTATTTGTTGCAAGAAGCGG
ATGTTATTGTCTCGGATGGGTTGGAAAAGTATTTGAGGCATCTCCAGACA
GAAATGTCCAAGATGTTCAATGGTAATTTCGGCTCTGTCTTTCGGGCAGA
AGGAGAACCCACATTGTTTGCGTTTTCGCTACGGCGGTACGCGGATCTGT
ATTTGAGTAAGCTCGAGAATTTTCGATTTTACTCGCCCATGCATCGTTTC
TACCCTCAACGAGGGATTTCAATGCCGCATGATCCGTACATTCCGGCAAT
CACCCGCCCGCCTCCCTCTGCGGTGGAGGAGGAAGGGGGTGGAGGGCGAG
AAGGAGTGGAAGAGTCGAAAGGTTCAGAGGAGGGGAGGTAA

Coding sequence (CDS) from alignment at scaffold_17:265477..267267+

>mRNA_6853 ID=mRNA_6853|Name=jgi.p|Nanoce1779_2|530904|organism=Nannochloropsis oceanica|type=CDS|length=3414bp|location=Sequence derived from alignment at scaffold_17:265477..267267+ (Nannochloropsis oceanica)
ATGATCAGCAGCGCCCCCAGCACCAGCACCAACACAGGCATCAAAATTGG
CAGCAGTATCCCCAGTCGTGGGGGATTTATTTGGCTGTCGCGGTCTTTGT
CGTCCACCGCACCCACAAAACACAAGAAGCATACCCCTCAGCCCTTGAGC
AGCATCACGCACCCACACCCGCGAATAAATCGGCTGCTGCGCGAATATCT
GGCCAAGATGGAAGAGGGGCCACCGACTTCTAATTCTCTCCAGCCGCCTG
GCCAGGAGCAGCAAAAAATACCCCGGAAGGACCGTATATTTGTCAACAAC
GCAATCAACTTGGGCAAGGTGGACGTCTTAGGCTGGGATTACGATTACAC
GCTCGTGAGTTATACCGACAAGATGGAAGGCCTTATATACAGCATGGCCA
AGGATTATCTGATCGAGCACTCGGGCTACCCTACGGAGATGAAGACTCGT
CGCACGTACGACCCGCACTTTGCTATTCGCGGCCTTGCCGTGGACATGGA
TCGAGGGTGGCTGCTCAAGCTCAGTTATATCAACCAAATCGCGCTGCGGA
CTGTTTTCAATGGCCGACAGCGCTTGACAAAGCAAGAGGTGTTGGCTGAG
TACGGGGACAGCTCTCACATCTCGCCACAGTACCGAAACGAGCACTTGAA
GCCTCTTCTTGACTTGTTCTCCATGTCGCTGGCCTGCCTGCTCGCCGATG
TCCTCGACTATTTGAACAAATTAGACATCCACCACGACCGCCGCGCCGTC
GTAGAAGACGTAATGAAAGCTATTAACCACGTGCACTTGAGCGGAAACAT
GCACAAGGAAGTGGTCAAGGACCCGCCCACCTACATGATGCCCTCGCCCC
ACTTACGCGAGACCCTGACACGCTTCCGCGACGTGGGCAAAAAGCTATTT
CTGTGCTCCAACTCCAATTACGAATATGTGTCGGGGGGGCTTCGATTCCT
GATTGGAGATGATTGGCAGGAGTTTTTTGACGTGGTAATCGTGAGCGCGG
ACAAGCCGGGTTTCTATACCTCTGATCGACCATTCCGTCAGGTGGCACAG
AGCACGGGCAAGATTCGGTGGACGGAAGTGACCACGCTGGAGAAAGGCAA
GGTCTACTCACACGGCTCTTTGGATGGCTTGACAAAGCTGACGGGGTGGA
TGGGCCCGCGAGTGCTGTATATTGGGGATCAGATTTGGGCGGACTTGGTG
GGGGCTCGGCGGAACCAGGGGTGGCGCACAGGAGCGGTGATTCGGGAGTT
GGACCATGAATTGCTTGTGCAGCAATCGACAAAGTACCGGGCGCATGCCC
ATAAGGTGATAACTGTGACGGAGCTCTTGCGCTTGGTGCAAGAAGATATG
GAGAAGATTCGGACGGATGTTATTGTCTCGGATGGGTTGGAAAAGTATTT
GAGGCATCTCCAGACAGAAATGTCCAAGATGTTCAATGGTAATTTCGGCT
CTGTCTTTCGGGCAGAAGGAGAACCCACATTGTTTGCGTTTTCGCTACGG
CGGTACGCGGATCTGTATTTGAGTAAGCTCGAGAATTTTCGATTTTACTC
GCCCATGCATCGTTTCTACCCTCAACGAGGGATTTCAATGCCGCATGATC
CGTACATTCCGGCAATCACCCGCCCGCCTCCCTCTGCGGTGGAGGAGGAA
GGGGGTGGAGGGCGAGAAGGAGTGGAAGAGTCGAAAGGTTCAGAGGAGGG
GAGGTAAATGATCAGCAGCGCCCCCAGCACCAGCACCAACACAGGCATCA
AAATTGGCAGCAGTATCCCCAGTCGTGGGGGATTTATTTGGCTGTCGCGG
TCTTTGTCGTCCACCGCACCCACAAAACACAAGAAGCATACCCCTCAGCC
CTTGAGCAGCATCACGCACCCACACCCGCGAATAAATCGGCTGCTGCGCG
AATATCTGGCCAAGATGGAAGAGGGGCCACCGACTTCTAATTCTCTCCAG
CCGCCTGGCCAGGAGCAGCAAAAAATACCCCGGAAGGACCGTATATTTGT
CAACAACGCAATCAACTTGGGCAAGGTGGACGTCTTAGGCTGGGATTACG
ATTACACGCTCGTGAGTTATACCGACAAGATGGAAGGCCTTATATACAGC
ATGGCCAAGGATTATCTGATCGAGCACTCGGGCTACCCTACGGAGATGAA
GACTCGTCGCACGTACGACCCGCACTTTGCTATTCGCGGCCTTGCCGTGG
ACATGGATCGAGGGTGGCTGCTCAAGCTCAGTTATATCAACCAAATCGCG
CTGCGGACTGTTTTCAATGGCCGACAGCGCTTGACAAAGCAAGAGGTGTT
GGCTGAGTACGGGGACAGCTCTCACATCTCGCCACAGTACCGAAACGAGC
ACTTGAAGCCTCTTCTTGACTTGTTCTCCATGTCGCTGGCCTGCCTGCTC
GCCGATGTCCTCGACTATTTGAACAAATTAGACATCCACCACGACCGCCG
CGCCGTCGTAGAAGACGTAATGAAAGCTATTAACCACGTGCACTTGAGCG
GAAACATGCACAAGGAAGTGGTCAAGGACCCGCCCACCTACATGATGCCC
TCGCCCCACTTACGCGAGACCCTGACACGCTTCCGCGACGTGGGCAAAAA
GCTATTTCTGTGCTCCAACTCCAATTACGAATATGTGTCGGGGGGGCTTC
GATTCCTGATTGGAGATGATTGGCAGGAGTTTTTTGACGTGGTAATCGTG
AGCGCGGACAAGCCGGGTTTCTATACCTCTGATCGACCATTCCGTCAGGT
GGCACAGAGCACGGGCAAGATTCGGTGGACGGAAGTGACCACGCTGGAGA
AAGGCAAGGTCTACTCACACGGCTCTTTGGATGGCTTGACAAAGCTGACG
GGGTGGATGGGCCCGCGAGTGCTGTATATTGGGGATCAGATTTGGGCGGA
CTTGGTGGGGGCTCGGCGGAACCAGGGGTGGCGCACAGGAGCGGTGATTC
GGGAGTTGGACCATGAATTGCTTGTGCAGCAATCGACAAAGTACCGGGCG
CATGCCCATAAGGTGATAACTGTGACGGAGCTCTTGCGCTTGGTGCAAGA
AGATATGGAGAAGATTCGGACGGATGTTATTGTCTCGGATGGGTTGGAAA
AGTATTTGAGGCATCTCCAGACAGAAATGTCCAAGATGTTCAATGGTAAT
TTCGGCTCTGTCTTTCGGGCAGAAGGAGAACCCACATTGTTTGCGTTTTC
GCTACGGCGGTACGCGGATCTGTATTTGAGTAAGCTCGAGAATTTTCGAT
TTTACTCGCCCATGCATCGTTTCTACCCTCAACGAGGGATTTCAATGCCG
CATGATCCGTACATTCCGGCAATCACCCGCCCGCCTCCCTCTGCGGTGGA
GGAGGAAGGGGGTGGAGGGCGAGAAGGAGTGGAAGAGTCGAAAGGTTCAG
AGGAGGGGAGGTAA

Synonyms

Publications