jgi.p|Nanoce1779_2|596539, mRNA_6851 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596539
Unique Name	mRNA_6851
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1348
Alignment location	scaffold_17:261408..262755 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596625
Track	FilteredModels2
ProteinId	596539

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:261408..262755 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596539	gene_6851	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596539	mRNA_6851-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6851	CDS_6851	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:261408..262755+
coding sequence from alignment at scaffold_17:261408..262755+

mRNA sequence

>mRNA_6851 ID=mRNA_6851|Name=jgi.p|Nanoce1779_2|596539|organism=Nannochloropsis oceanica|type=mRNA|length=1348bp
AGGAGGAGGAGGAGGAGGAGGAGGACAAACGGAAGAGGGGCAGGAGCAGC
AGCGTGGACAGCGTGGACAGCGTGGACAGCTTGGGGCGGATCAAGAGGCG
GCGGGTTAGGATAGGCAACGGGAGTGACGATGATGAGGATGAGGATGACG
ACGATCTGGAGAGGAGACGGGGACGGCGCGGACGCAATGGTGGAGTGTGG
AGAAATCGCAGCCGCAGTCGTAGTCGCAGCCGGGAGCGGCGAAGGACGAA
CGAGAGGGACGATGCTGTCAAAGGCTCTTTGCGGGAGGACAAGAAGAAGG
AAGAAGAGGAGGAACCGGAAGGAGGGGCGACGATGCCTTTGCCACCGCCT
TCTGGAGTACCGGACACCCGCAGTGCCGTCAAGATCTTTGCGGACGCTCC
TCCGTCGGAAGTAGCTCTGGCTCCACCCCCTCCTCGGCGTCGGCGACGAC
CAGATGCCAAGAAGCCAACGACCGCGGCTACTGCTATTACTACTGATGCT
ATTGCTGCCGCTGCTGCTCCTGTCCCCACGCCTGTCCCCGGGTCTATCCC
TTATGTACCAACAGCACCAGTGGCATCAACAGGCACGTGTACAGCAGCCG
CCATCTCTCCCTCCGAGCAGCAGCAGCAAGAACTCTCTTCACTCTCACCA
AAAGGAGGCCGGTCTCAACGAGCACCTGTATCCCCAACGCGAGGAAAGCG
ACCGCCACCACCACCAGCAGCAGCGGTTCTACCTCTTCCTACGCGTCCTC
TCCCTCAGGAAAAGAGAGAGGAGGAGGAGGAAGAGGAGGATGACGACTTG
ATGTTTGAAACGGAGAAGGAAAGGGAGGAACGAGAGATGGCCGAGCGTCG
AGCAAGGCGAGAAAAGATGCTCGCTCAGTTTGGTGGTGCTGACGTAACTG
CCAGAGGAGATGAAAAAGATAGGTCAGGAGGAAAAAGCACTAAATGTCCT
CCTCCTTTGGTGTTGAGTCCTGCGGTGCCGACTTGTTCGTTGCCTACTTT
AGTCCAAGAGAAAAAGGAGAAATGGCATGCTGGTACTGCTACTGCTGCTG
TCCCTGCAATGGCATCTGCAACTGCTGATACCGCAGCTGCTGCTATCGCA
CCGCCAGCAGGGAAGAAAAAAACGAAGGAAACGGAGAAAGAGAAAGAGGA
GGCCATGAGAATATTCCTAGCTGAGACTCGCCGTCAGGTGGAAGATGCCT
TGGGAGGAGCAGGCGAGCTGATGATGGAGGACGTGGAGGAGGATGAGGAA
GAGAGGAATGAAGGGACAGACGGTGCAGATGAAGTGATGAAACATGAGGA
AGAGGAGGAGGACGAGGTGGAAAAGGAGAAAGGCGTCGGTGCTGCTAC

protein sequence of jgi.p|Nanoce1779_2|596539

>mRNA_6851-protein ID=mRNA_6851-protein|Name=jgi.p|Nanoce1779_2|596539|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MPRSQRPRLLLLLLMLLLPLLLLSPRLSPGLSLMYQQHQWHQQARVQQPP
SLPPSSSSKNSLHSHQKEAGLNEHLYPQREESDRHHHQQQRFYLFLRVLS
LRKRERRRRKRRMTT*

mRNA from alignment at scaffold_17:261408..262755+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6851 ID=mRNA_6851|Name=jgi.p|Nanoce1779_2|596539|organism=Nannochloropsis oceanica|type=mRNA|length=1348bp|location=Sequence derived from alignment at scaffold_17:261408..262755+ (Nannochloropsis oceanica)
AGGAGGAGGAGGAGGAGGAGGAGGACAAACGGAAGAGGGGCAGGAGCAGC
AGCGTGGACAGCGTGGACAGCGTGGACAGCTTGGGGCGGATCAAGAGGCG
GCGGGTTAGGATAGGCAACGGGAGTGACGATGATGAGGATGAGGATGACG
ACGATCTGGAGAGGAGACGGGGACGGCGCGGACGCAATGGTGGAGTGTGG
AGAAATCGCAGCCGCAGTCGTAGTCGCAGCCGGGAGCGGCGAAGGACGAA
CGAGAGGGACGATGCTGTCAAAGGCTCTTTGCGGGAGGACAAGAAGAAGG
AAGAAGAGGAGGAACCGGAAGGAGGGGCGACGATGCCTTTGCCACCGCCT
TCTGGAGTACCGGACACCCGCAGTGCCGTCAAGATCTTTGCGGACGCTCC
TCCGTCGGAAGTAGCTCTGGCTCCACCCCCTCCTCGGCGTCGGCGACGAC
CAGATGCCAAGAAGCCAACGACCGCGGCTACTGCTATTACTACTGATGCT
ATTGCTGCCGCTGCTGCTCCTGTCCCCACGCCTGTCCCCGGGTCTATCCC
TTATGTACCAACAGCACCAGTGGCATCAACAGGCACGTGTACAGCAGCCG
CCATCTCTCCCTCCGAGCAGCAGCAGCAAGAACTCTCTTCACTCTCACCA
AAAGGAGGCCGGTCTCAACGAGCACCTGTATCCCCAACGCGAGGAAAGCG
ACCGCCACCACCACCAGCAGCAGCGGTTCTACCTCTTCCTACGCGTCCTC
TCCCTCAGGAAAAGAGAGAGGAGGAGGAGGAAGAGGAGGATGACGACTTG
ATGTTTGAAACGGAGAAGGAAAGGGAGGAACGAGAGATGGCCGAGCGTCG
AGCAAGGCGAGAAAAGATGCTCGCTCAGTTTGGTGGTGCTGACGTAACTG
CCAGAGGAGATGAAAAAGATAGGTCAGGAGGAAAAAGCACTAAATGTCCT
CCTCCTTTGGTGTTGAGTCCTGCGGTGCCGACTTGTTCGTTGCCTACTTT
AGTCCAAGAGAAAAAGGAGAAATGGCATGCTGGTACTGCTACTGCTGCTG
TCCCTGCAATGGCATCTGCAACTGCTGATACCGCAGCTGCTGCTATCGCA
CCGCCAGCAGGGAAGAAAAAAACGAAGGAAACGGAGAAAGAGAAAGAGGA
GGCCATGAGAATATTCCTAGCTGAGACTCGCCGTCAGGTGGAAGATGCCT
TGGGAGGAGCAGGCGAGCTGATGATGGAGGACGTGGAGGAGGATGAGGAA
GAGAGGAATGAAGGGACAGACGGTGCAGATGAAGTGATGAAACATGAGGA
AGAGGAGGAGGACGAGGTGGAAAAGGAGAAAGGCGTCGGTGCTGCTAC

Coding sequence (CDS) from alignment at scaffold_17:261408..262755+

>mRNA_6851 ID=mRNA_6851|Name=jgi.p|Nanoce1779_2|596539|organism=Nannochloropsis oceanica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_17:261408..262755+ (Nannochloropsis oceanica)
ATGCCAAGAAGCCAACGACCGCGGCTACTGCTATTACTACTGATGCTATT
GCTGCCGCTGCTGCTCCTGTCCCCACGCCTGTCCCCGGGTCTATCCCTTA
TGTACCAACAGCACCAGTGGCATCAACAGGCACGTGTACAGCAGCCGCCA
TCTCTCCCTCCGAGCAGCAGCAGCAAGAACTCTCTTCACTCTCACCAAAA
GGAGGCCGGTCTCAACGAGCACCTGTATCCCCAACGCGAGGAAAGCGACC
GCCACCACCACCAGCAGCAGCGGTTCTACCTCTTCCTACGCGTCCTCTCC
CTCAGGAAAAGAGAGAGGAGGAGGAGGAAGAGGAGGATGACGACTTGA

Synonyms

Publications