jgi.p|Nanoce1779_2|596536, mRNA_6850 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596536
Unique NamemRNA_6850
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1525
Alignment locationscaffold_17:259366..261077 -

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Properties
Property NameValue
TranscriptId596622
TrackFilteredModels2
ProteinId596536
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:259366..261077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596536gene_6850Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596536mRNA_6850-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6850CDS_6850Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6850 ID=mRNA_6850|Name=jgi.p|Nanoce1779_2|596536|organism=Nannochloropsis oceanica|type=mRNA|length=1525bp
CAGAAAAATACTTGCAAGCGGCGCGGCTGCAGTGGGCGGTGTGGGAACGG
GCGGGGGAGGGGGAAACAGTTAACAAGAAATAGGTGGGTAAACCAAAGTA
TGCCTCGCAGCCGGAAACCTGCGCTATTGCTGCTGCTTCTAGCCATCACG
AGCACACACGCCTTCCTTCTACCACACCTACACACCAGCAGTTGCCTTCG
ACTACATCACTCAAAGCAGCCAACGCGTCGGCTATCCCTAAGGTCCATTT
CAACTCCTCCTTTGCACGGCAGCAGCAGCGCAGACGAGGAGGCCGATGTT
GCCACGCTCCAGGCCAACGAAGGATGGGTCGAGCCTTGGGCAGGCACCGA
GAGCAGTGATCTTGTCCGCATTGTCTTCGACTGCTACGAGAAGGACAAGA
TGGTCATTGATCCATGGCTGCTGAGTGAACTGCTGCTCGAGACAGGGGCG
TACAGCAGCCAGATAGAGGATGCGGCCAAGGACACAAAGGACGAGACACC
GATTTTTGGAGAGCATGGAGAACCAGCTTGTAGTGAGAAGATCTGGAATC
GGAGCTTGGTCATGGCGGATTATGGGCTTGAGGTGGACGTGGGTGGAGTG
CTGGCCCTAGTCAAAGCGGCCTTTGAGCTTTGCGACACCTACCCCTTGAA
ATACCGCCTTGAGCGGATCATTGACCGCGACTGGCAAAAAGAAGTCCAGG
AAGGATGGAAACCCATTCTCCTCGGCGACCGTCTGGTGGTGAAGTTTACA
TGGCACAATGAGGAGGACATGGCGCCTTTTCTTCTCTCTGAGGAGAAGAA
GATGAAGGTGATGACTTTGGAAGGCGGGGCGGCATTTGGCAGCGGAGAAC
ACCCGACGACGCACATGTGCTGTGCATGGCTACAGGAATGGCTAGAACAG
CACGCTCTAGCGGGTGGGAGAGAGGTGAGTGTGTGTGATTACGGAGCAGG
GAGTGGGATTTTGGCGTTGGCTGCGTTGATGTTTGGGGCCAGCACGGCGG
TAGGCGTGGAGATCGATCCCTTTGCGATTCAAAGTGCCTATCGTAACGCA
GCAATGAATGGATTGGAGACCGTGTTTTTACTGCCAGTCGAGAAGAAGTT
AGGAGGAAAAAAAGATGGGGACACTCGCGCAAAGTTTTTGGTAGTGCGAC
CGGCTGGGAACGAGAAGGAGGAGGAGGAAATGGAAATGGAAGAGGTAAAC
ATAGCTCCAACGGACGTGATGCTCGCCAATATACTGAAGAGGCCATTGAT
TGAACTATCGAAGCAAATATCGGGTCTGACGAAGCTTGGAGGGAAGGTGG
TGTTGGCGGGGTTGTTGGTTGAGCAGGCCGAGAGTGTGATGGAGGCGTAT
CGGCGTTATTTTCCCGATATACATCAAGCGAATAGCATGGGGGAGTGGGC
GTTATTAGTAGGGACGCGGAATAACGAGCCAGTGGTGTTCGAGGAATGAG
GGAAGGAACTAAAACAGACAGAAAGGAAGTGGGGGCCGATTTTTGTAAAA
AAAGAAGCAAACGAGATACGAAACA
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protein sequence of jgi.p|Nanoce1779_2|596536

>mRNA_6850-protein ID=mRNA_6850-protein|Name=jgi.p|Nanoce1779_2|596536|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MPRSRKPALLLLLLAITSTHAFLLPHLHTSSCLRLHHSKQPTRRLSLRSI
STPPLHGSSSADEEADVATLQANEGWVEPWAGTESSDLVRIVFDCYEKDK
MVIDPWLLSELLLETGAYSSQIEDAAKDTKDETPIFGEHGEPACSEKIWN
RSLVMADYGLEVDVGGVLALVKAAFELCDTYPLKYRLERIIDRDWQKEVQ
EGWKPILLGDRLVVKFTWHNEEDMAPFLLSEEKKMKVMTLEGGAAFGSGE
HPTTHMCCAWLQEWLEQHALAGGREVSVCDYGAGSGILALAALMFGASTA
VGVEIDPFAIQSAYRNAAMNGLETVFLLPVEKKLGGKKDGDTRAKFLVVR
PAGNEKEEEEMEMEEVNIAPTDVMLANILKRPLIELSKQISGLTKLGGKV
VLAGLLVEQAESVMEAYRRYFPDIHQANSMGEWALLVGTRNNEPVVFEE*
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mRNA from alignment at scaffold_17:259366..261077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6850 ID=mRNA_6850|Name=jgi.p|Nanoce1779_2|596536|organism=Nannochloropsis oceanica|type=mRNA|length=1712bp|location=Sequence derived from alignment at scaffold_17:259366..261077- (Nannochloropsis oceanica)
CAGAAAAATACTTGCAAGCGGCGCGGCTGCAGTGGGCGGTGTGGGAACGG
GCGGGGGAGGGGGAAACAGTTAACAAGAAATAGGTGGGTAAACCAAAGTA
TGCCTCGCAGCCGGAAACCTGCGCTATTGCTGCTGCTTCTAGCCATCACG
AGCACACACGCCTTCCTTCTACCACACCTACACACCAGCAGTTGCCTTCG
ACTACATCACTCAAAGCAGCCAACGCGTCGGCTATCCCTAAGGTCCATTT
CAACTCCTCCTTTGCACGGCAGCAGCAGCGCAGACGAGGAGGCCGATGTT
GCCACGCTCCAGGCCAACGAAGGATGGGTCGAGCCTTGGGCAGGCACCGA
GAGCAGTGATCTTGTCCGCATTGTCTTCGACTGCTACGAGAAGGACAAGA
TGGTCATTGATCCATGGCTGCTGAGTGAACTGCTGCTCGAGACAGGGGCG
TACAGCAGCCAGATAGAGGATGCGGCCAAGGACACAAAGGACGAGACACC
GATTTTTGGAGAGCATGGAGAACCAGCTTGTAGTGAGAAGATCTGGAATC
GGAGCTTGGTCATGGCGGATTATGGGCTTGAGGTGGACGTGGGTGGAGTG
CTGGTGCGTAGCTTCCAGAAGCGAGGGAGAGGGAGGGCGACCTGGTTACA
TTTTTGGTCTCTTCTTGCGTGCTTGATTGCTGTGTCGCATGTTTGCACTT
GTTCCCGAATTTTATTCTATCTCTTTTCTCCTGCTCCTACATTCGAGCGT
TTCTCCTCCTCCCTTCTCGTTCTTCATCACACAAAATTAGGCCCTAGTCA
AAGCGGCCTTTGAGCTTTGCGACACCTACCCCTTGAAATACCGCCTTGAG
CGGATCATTGACCGCGACTGGCAAAAAGAAGTCCAGGAAGGATGGAAACC
CATTCTCCTCGGCGACCGTCTGGTGGTGAAGTTTACATGGCACAATGAGG
AGGACATGGCGCCTTTTCTTCTCTCTGAGGAGAAGAAGATGAAGGTGATG
ACTTTGGAAGGCGGGGCGGCATTTGGCAGCGGAGAACACCCGACGACGCA
CATGTGCTGTGCATGGCTACAGGAATGGCTAGAACAGCACGCTCTAGCGG
GTGGGAGAGAGGTGAGTGTGTGTGATTACGGAGCAGGGAGTGGGATTTTG
GCGTTGGCTGCGTTGATGTTTGGGGCCAGCACGGCGGTAGGCGTGGAGAT
CGATCCCTTTGCGATTCAAAGTGCCTATCGTAACGCAGCAATGAATGGAT
TGGAGACCGTGTTTTTACTGCCAGTCGAGAAGAAGTTAGGAGGAAAAAAA
GATGGGGACACTCGCGCAAAGTTTTTGGTAGTGCGACCGGCTGGGAACGA
GAAGGAGGAGGAGGAAATGGAAATGGAAGAGGTAAACATAGCTCCAACGG
ACGTGATGCTCGCCAATATACTGAAGAGGCCATTGATTGAACTATCGAAG
CAAATATCGGGTCTGACGAAGCTTGGAGGGAAGGTGGTGTTGGCGGGGTT
GTTGGTTGAGCAGGCCGAGAGTGTGATGGAGGCGTATCGGCGTTATTTTC
CCGATATACATCAAGCGAATAGCATGGGGGAGTGGGCGTTATTAGTAGGG
ACGCGGAATAACGAGCCAGTGGTGTTCGAGGAATGAGGGAAGGAACTAAA
ACAGACAGAAAGGAAGTGGGGGCCGATTTTTGTAAAAAAAGAAGCAAACG
AGATACGAAACA
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Coding sequence (CDS) from alignment at scaffold_17:259366..261077-

>mRNA_6850 ID=mRNA_6850|Name=jgi.p|Nanoce1779_2|596536|organism=Nannochloropsis oceanica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_17:259366..261077- (Nannochloropsis oceanica)
GCCCTAGTCAAAGCGGCCTTTGAGCTTTGCGACACCTACCCCTTGAAATA
CCGCCTTGAGCGGATCATTGACCGCGACTGGCAAAAAGAAGTCCAGGAAG
GATGGAAACCCATTCTCCTCGGCGACCGTCTGGTGGTGAAGTTTACATGG
CACAATGAGGAGGACATGGCGCCTTTTCTTCTCTCTGAGGAGAAGAAGAT
GAAGGTGATGACTTTGGAAGGCGGGGCGGCATTTGGCAGCGGAGAACACC
CGACGACGCACATGTGCTGTGCATGGCTACAGGAATGGCTAGAACAGCAC
GCTCTAGCGGGTGGGAGAGAGGTGAGTGTGTGTGATTACGGAGCAGGGAG
TGGGATTTTGGCGTTGGCTGCGTTGATGTTTGGGGCCAGCACGGCGGTAG
GCGTGGAGATCGATCCCTTTGCGATTCAAAGTGCCTATCGTAACGCAGCA
ATGAATGGATTGGAGACCGTGTTTTTACTGCCAGTCGAGAAGAAGTTAGG
AGGAAAAAAAGATGGGGACACTCGCGCAAAGTTTTTGGTAGTGCGACCGG
CTGGGAACGAGAAGGAGGAGGAGGAAATGGAAATGGAAGAGGTAAACATA
GCTCCAACGGACGTGATGCTCGCCAATATACTGAAGAGGCCATTGATTGA
ACTATCGAAGCAAATATCGGGTCTGACGAAGCTTGGAGGGAAGGTGGTGT
TGGCGGGGTTGTTGGTTGAGCAGGCCGAGAGTGTGATGGAGGCGTATCGG
CGTTATTTTCCCGATATACATCAAGCGAATAGCATGGGGGAGTGGGCGTT
ATTAGTAGGGACGCGGAATAACGAGCCAGTGGTGTTCGAGGAATGAATGC
CTCGCAGCCGGAAACCTGCGCTATTGCTGCTGCTTCTAGCCATCACGAGC
ACACACGCCTTCCTTCTACCACACCTACACACCAGCAGTTGCCTTCGACT
ACATCACTCAAAGCAGCCAACGCGTCGGCTATCCCTAAGGTCCATTTCAA
CTCCTCCTTTGCACGGCAGCAGCAGCGCAGACGAGGAGGCCGATGTTGCC
ACGCTCCAGGCCAACGAAGGATGGGTCGAGCCTTGGGCAGGCACCGAGAG
CAGTGATCTTGTCCGCATTGTCTTCGACTGCTACGAGAAGGACAAGATGG
TCATTGATCCATGGCTGCTGAGTGAACTGCTGCTCGAGACAGGGGCGTAC
AGCAGCCAGATAGAGGATGCGGCCAAGGACACAAAGGACGAGACACCGAT
TTTTGGAGAGCATGGAGAACCAGCTTGTAGTGAGAAGATCTGGAATCGGA
GCTTGGTCATGGCGGATTATGGGCTTGAGGTGGACGTGGGTGGAGTGCTG
GCCCTAGTCAAAGCGGCCTTTGAGCTTTGCGACACCTACCCCTTGAAATA
CCGCCTTGAGCGGATCATTGACCGCGACTGGCAAAAAGAAGTCCAGGAAG
GATGGAAACCCATTCTCCTCGGCGACCGTCTGGTGGTGAAGTTTACATGG
CACAATGAGGAGGACATGGCGCCTTTTCTTCTCTCTGAGGAGAAGAAGAT
GAAGGTGATGACTTTGGAAGGCGGGGCGGCATTTGGCAGCGGAGAACACC
CGACGACGCACATGTGCTGTGCATGGCTACAGGAATGGCTAGAACAGCAC
GCTCTAGCGGGTGGGAGAGAGGTGAGTGTGTGTGATTACGGAGCAGGGAG
TGGGATTTTGGCGTTGGCTGCGTTGATGTTTGGGGCCAGCACGGCGGTAG
GCGTGGAGATCGATCCCTTTGCGATTCAAAGTGCCTATCGTAACGCAGCA
ATGAATGGATTGGAGACCGTGTTTTTACTGCCAGTCGAGAAGAAGTTAGG
AGGAAAAAAAGATGGGGACACTCGCGCAAAGTTTTTGGTAGTGCGACCGG
CTGGGAACGAGAAGGAGGAGGAGGAAATGGAAATGGAAGAGGTAAACATA
GCTCCAACGGACGTGATGCTCGCCAATATACTGAAGAGGCCATTGATTGA
ACTATCGAAGCAAATATCGGGTCTGACGAAGCTTGGAGGGAAGGTGGTGT
TGGCGGGGTTGTTGGTTGAGCAGGCCGAGAGTGTGATGGAGGCGTATCGG
CGTTATTTTCCCGATATACATCAAGCGAATAGCATGGGGGAGTGGGCGTT
ATTAGTAGGGACGCGGAATAACGAGCCAGTGGTGTTCGAGGAATGAATGC
CTCGCAGCCGGAAACCTGCGCTATTGCTGCTGCTTCTAGCCATCACGAGC
ACACACGCCTTCCTTCTACCACACCTACACACCAGCAGTTGCCTTCGACT
ACATCACTCAAAGCAGCCAACGCGTCGGCTATCCCTAAGGTCCATTTCAA
CTCCTCCTTTGCACGGCAGCAGCAGCGCAGACGAGGAGGCCGATGTTGCC
ACGCTCCAGGCCAACGAAGGATGGGTCGAGCCTTGGGCAGGCACCGAGAG
CAGTGATCTTGTCCGCATTGTCTTCGACTGCTACGAGAAGGACAAGATGG
TCATTGATCCATGGCTGCTGAGTGAACTGCTGCTCGAGACAGGGGCGTAC
AGCAGCCAGATAGAGGATGCGGCCAAGGACACAAAGGACGAGACACCGAT
TTTTGGAGAGCATGGAGAACCAGCTTGTAGTGAGAAGATCTGGAATCGGA
GCTTGGTCATGGCGGATTATGGGCTTGAGGTGGACGTGGGTGGAGTGCTG
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Synonyms
Publications