jgi.p|Nanoce1779_2|530842, mRNA_6849 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|530842
Unique NamemRNA_6849
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1587
Alignment locationscaffold_17:257396..258982 -

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Properties
Property NameValue
TranscriptId530928
TrackFilteredModels2
ProteinId530842
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:257396..258982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530842gene_6849Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6849CDS_6849Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530842mRNA_6849-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6849 ID=mRNA_6849|Name=jgi.p|Nanoce1779_2|530842|organism=Nannochloropsis oceanica|type=mRNA|length=1587bp
ATGTCGTCGTCCCGATCATCTGCCTACCCGGCCGCAACTTTACATCACCT
CTCCTTCTCCACGACCTCTCCCACTTCCGATTCAGCGCCCGCTGCTGTCA
GCATCCGTCGTGTGGGTATCGTGGGTGCAGGACCTTCAGGATTCTACGTT
GCCAAGTACCTGCTCAAGGAGCTGGGGCAAAGCGCGACGGTGGAGATGAT
CGACTGCCTGCCCACGCCCTTTGGGCTTGTCCGAACGGGCGTCGCACCCG
ACCATCCCGAGGTCAAGTCGGTCCAAAAAGACTTCGAAAAGGTAGCAGAA
GACCGACGTTTTCATTTCTTTGGCAATATCCGTGTGGGGCAAGACGTAGG
GATGGCTGAACTGCGTGCGTTTTATGACGTTGTTGTGCTGGCGTACGGAG
CGTCGGAGGACCGCACATTGGGTATCCCAGGCGAAGACACCTTGGAAGGT
GTGGTCAGTGCCCGAACCTTTGTCAATTGGTACAACGGCCATCCTGATTA
TGCACCTGACAAGAAATTGACAGCGATGCTTCGTGACATTCTTGCCCAGC
CCGGCGCGCAGGCCGCGGTGTTGGGGCAGGGGAACGTGGCCTTGGATTGT
GCCCGTCTTCTCGTCAAGCAACCGGCGGACCTTGCGTCAAGTGATATCTG
TGAGCATGCCTTGGAGGTACTAAAACAGAGTCAACTTACCACCATGTCTG
TGATCGGACGGCGAGGGCATGGACAAGCAGCGTTTACCATAAAAGAATTG
AGAGAGCTATCCCGGATAGCAGGAGCCACGTTGGTCGTCCCTCCGGAGGA
GGTCATGCAAGGTCTCACACCATTTACCATCGCCAATCTCGCTCAATCCC
GTCCTCGCAAGCGCTTGGCAGACCTGGTGGAATCCTTGCCTGCTCCTGCA
GCAACAGCAGAAGCAGCAACAGCAGCTGGACGTACTGTTGTCCTTCGATT
CCTGCTCCTCCCCAAGGCGCTACTACCCGACCCAGCAAGACCAAGCCATG
TTGGGTCCATCGTTTTCGAACGTGCACGGCTTGAACAGGAAGGGGGGGAG
GGGGGACGGATCGTGGCTGCGGGGACGGGGGAAGTAATTGAGATACCGTG
TAATTTGGTGCTAAGGTCGATTGGGTACAAATCCCGGCCTCTGGAAGGAG
TACCATTTGATAATAAAAAAGCGGTGGTCCCGAATCGTCAGGGACGGGTG
TTGGTTGAGATATCACCAGAAACAGGAAAACTGGAACCAGCAGTATCGGC
TCCAGTAGCAGGGGAGGTTGTGCCTGGGATGTATTGCACCGGGTGGGTTA
AGAGGGGTCCGACCGGCATTGTGAATACAAACATTTACGACGCACGGGAA
ACAGTGGCTTCCATTGTGGAGGACGCGGTACAGGGTAGGTTGAACCTTGC
ATCCTCTTCCTCGTCGTCGCTCTTGGAGGTGTTATCCAAGGCGGGGAGGA
AGAAAGTGGAGGAGGTGGTGACTTGGCAAGGGTACAAGAAGATCGATGCA
TATGAGTGCATGGTAGGGGCGGCGAAGGGAAAACCAAGGGAGAAGGTGAT
TGACGCACAAGAGCTTGTGCTGATAGCGACTAGATAG
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protein sequence of jgi.p|Nanoce1779_2|530842

>mRNA_6849-protein ID=mRNA_6849-protein|Name=jgi.p|Nanoce1779_2|530842|organism=Nannochloropsis oceanica|type=polypeptide|length=529bp
MSSSRSSAYPAATLHHLSFSTTSPTSDSAPAAVSIRRVGIVGAGPSGFYV
AKYLLKELGQSATVEMIDCLPTPFGLVRTGVAPDHPEVKSVQKDFEKVAE
DRRFHFFGNIRVGQDVGMAELRAFYDVVVLAYGASEDRTLGIPGEDTLEG
VVSARTFVNWYNGHPDYAPDKKLTAMLRDILAQPGAQAAVLGQGNVALDC
ARLLVKQPADLASSDICEHALEVLKQSQLTTMSVIGRRGHGQAAFTIKEL
RELSRIAGATLVVPPEEVMQGLTPFTIANLAQSRPRKRLADLVESLPAPA
ATAEAATAAGRTVVLRFLLLPKALLPDPARPSHVGSIVFERARLEQEGGE
GGRIVAAGTGEVIEIPCNLVLRSIGYKSRPLEGVPFDNKKAVVPNRQGRV
LVEISPETGKLEPAVSAPVAGEVVPGMYCTGWVKRGPTGIVNTNIYDARE
TVASIVEDAVQGRLNLASSSSSSLLEVLSKAGRKKVEEVVTWQGYKKIDA
YECMVGAAKGKPREKVIDAQELVLIATR*
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mRNA from alignment at scaffold_17:257396..258982-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6849 ID=mRNA_6849|Name=jgi.p|Nanoce1779_2|530842|organism=Nannochloropsis oceanica|type=mRNA|length=1587bp|location=Sequence derived from alignment at scaffold_17:257396..258982- (Nannochloropsis oceanica)
ATGTCGTCGTCCCGATCATCTGCCTACCCGGCCGCAACTTTACATCACCT
CTCCTTCTCCACGACCTCTCCCACTTCCGATTCAGCGCCCGCTGCTGTCA
GCATCCGTCGTGTGGGTATCGTGGGTGCAGGACCTTCAGGATTCTACGTT
GCCAAGTACCTGCTCAAGGAGCTGGGGCAAAGCGCGACGGTGGAGATGAT
CGACTGCCTGCCCACGCCCTTTGGGCTTGTCCGAACGGGCGTCGCACCCG
ACCATCCCGAGGTCAAGTCGGTCCAAAAAGACTTCGAAAAGGTAGCAGAA
GACCGACGTTTTCATTTCTTTGGCAATATCCGTGTGGGGCAAGACGTAGG
GATGGCTGAACTGCGTGCGTTTTATGACGTTGTTGTGCTGGCGTACGGAG
CGTCGGAGGACCGCACATTGGGTATCCCAGGCGAAGACACCTTGGAAGGT
GTGGTCAGTGCCCGAACCTTTGTCAATTGGTACAACGGCCATCCTGATTA
TGCACCTGACAAGAAATTGACAGCGATGCTTCGTGACATTCTTGCCCAGC
CCGGCGCGCAGGCCGCGGTGTTGGGGCAGGGGAACGTGGCCTTGGATTGT
GCCCGTCTTCTCGTCAAGCAACCGGCGGACCTTGCGTCAAGTGATATCTG
TGAGCATGCCTTGGAGGTACTAAAACAGAGTCAACTTACCACCATGTCTG
TGATCGGACGGCGAGGGCATGGACAAGCAGCGTTTACCATAAAAGAATTG
AGAGAGCTATCCCGGATAGCAGGAGCCACGTTGGTCGTCCCTCCGGAGGA
GGTCATGCAAGGTCTCACACCATTTACCATCGCCAATCTCGCTCAATCCC
GTCCTCGCAAGCGCTTGGCAGACCTGGTGGAATCCTTGCCTGCTCCTGCA
GCAACAGCAGAAGCAGCAACAGCAGCTGGACGTACTGTTGTCCTTCGATT
CCTGCTCCTCCCCAAGGCGCTACTACCCGACCCAGCAAGACCAAGCCATG
TTGGGTCCATCGTTTTCGAACGTGCACGGCTTGAACAGGAAGGGGGGGAG
GGGGGACGGATCGTGGCTGCGGGGACGGGGGAAGTAATTGAGATACCGTG
TAATTTGGTGCTAAGGTCGATTGGGTACAAATCCCGGCCTCTGGAAGGAG
TACCATTTGATAATAAAAAAGCGGTGGTCCCGAATCGTCAGGGACGGGTG
TTGGTTGAGATATCACCAGAAACAGGAAAACTGGAACCAGCAGTATCGGC
TCCAGTAGCAGGGGAGGTTGTGCCTGGGATGTATTGCACCGGGTGGGTTA
AGAGGGGTCCGACCGGCATTGTGAATACAAACATTTACGACGCACGGGAA
ACAGTGGCTTCCATTGTGGAGGACGCGGTACAGGGTAGGTTGAACCTTGC
ATCCTCTTCCTCGTCGTCGCTCTTGGAGGTGTTATCCAAGGCGGGGAGGA
AGAAAGTGGAGGAGGTGGTGACTTGGCAAGGGTACAAGAAGATCGATGCA
TATGAGTGCATGGTAGGGGCGGCGAAGGGAAAACCAAGGGAGAAGGTGAT
TGACGCACAAGAGCTTGTGCTGATAGCGACTAGATAG
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Coding sequence (CDS) from alignment at scaffold_17:257396..258982-

>mRNA_6849 ID=mRNA_6849|Name=jgi.p|Nanoce1779_2|530842|organism=Nannochloropsis oceanica|type=CDS|length=1587bp|location=Sequence derived from alignment at scaffold_17:257396..258982- (Nannochloropsis oceanica)
ATGTCGTCGTCCCGATCATCTGCCTACCCGGCCGCAACTTTACATCACCT
CTCCTTCTCCACGACCTCTCCCACTTCCGATTCAGCGCCCGCTGCTGTCA
GCATCCGTCGTGTGGGTATCGTGGGTGCAGGACCTTCAGGATTCTACGTT
GCCAAGTACCTGCTCAAGGAGCTGGGGCAAAGCGCGACGGTGGAGATGAT
CGACTGCCTGCCCACGCCCTTTGGGCTTGTCCGAACGGGCGTCGCACCCG
ACCATCCCGAGGTCAAGTCGGTCCAAAAAGACTTCGAAAAGGTAGCAGAA
GACCGACGTTTTCATTTCTTTGGCAATATCCGTGTGGGGCAAGACGTAGG
GATGGCTGAACTGCGTGCGTTTTATGACGTTGTTGTGCTGGCGTACGGAG
CGTCGGAGGACCGCACATTGGGTATCCCAGGCGAAGACACCTTGGAAGGT
GTGGTCAGTGCCCGAACCTTTGTCAATTGGTACAACGGCCATCCTGATTA
TGCACCTGACAAGAAATTGACAGCGATGCTTCGTGACATTCTTGCCCAGC
CCGGCGCGCAGGCCGCGGTGTTGGGGCAGGGGAACGTGGCCTTGGATTGT
GCCCGTCTTCTCGTCAAGCAACCGGCGGACCTTGCGTCAAGTGATATCTG
TGAGCATGCCTTGGAGGTACTAAAACAGAGTCAACTTACCACCATGTCTG
TGATCGGACGGCGAGGGCATGGACAAGCAGCGTTTACCATAAAAGAATTG
AGAGAGCTATCCCGGATAGCAGGAGCCACGTTGGTCGTCCCTCCGGAGGA
GGTCATGCAAGGTCTCACACCATTTACCATCGCCAATCTCGCTCAATCCC
GTCCTCGCAAGCGCTTGGCAGACCTGGTGGAATCCTTGCCTGCTCCTGCA
GCAACAGCAGAAGCAGCAACAGCAGCTGGACGTACTGTTGTCCTTCGATT
CCTGCTCCTCCCCAAGGCGCTACTACCCGACCCAGCAAGACCAAGCCATG
TTGGGTCCATCGTTTTCGAACGTGCACGGCTTGAACAGGAAGGGGGGGAG
GGGGGACGGATCGTGGCTGCGGGGACGGGGGAAGTAATTGAGATACCGTG
TAATTTGGTGCTAAGGTCGATTGGGTACAAATCCCGGCCTCTGGAAGGAG
TACCATTTGATAATAAAAAAGCGGTGGTCCCGAATCGTCAGGGACGGGTG
TTGGTTGAGATATCACCAGAAACAGGAAAACTGGAACCAGCAGTATCGGC
TCCAGTAGCAGGGGAGGTTGTGCCTGGGATGTATTGCACCGGGTGGGTTA
AGAGGGGTCCGACCGGCATTGTGAATACAAACATTTACGACGCACGGGAA
ACAGTGGCTTCCATTGTGGAGGACGCGGTACAGGGTAGGTTGAACCTTGC
ATCCTCTTCCTCGTCGTCGCTCTTGGAGGTGTTATCCAAGGCGGGGAGGA
AGAAAGTGGAGGAGGTGGTGACTTGGCAAGGGTACAAGAAGATCGATGCA
TATGAGTGCATGGTAGGGGCGGCGAAGGGAAAACCAAGGGAGAAGGTGAT
TGACGCACAAGAGCTTGTGCTGATAGCGACTAGATAG
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Synonyms
Publications