Properties
| Property Name | Value |
|---|
| TranscriptId | 596607 |
| Track | FilteredModels2 |
| ProteinId | 596521 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:246430..249336 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6846 ID=mRNA_6846|Name=jgi.p|Nanoce1779_2|596521|organism=Nannochloropsis oceanica|type=mRNA|length=2396bp
AACAGGAGCTCTTCACCGTACACTGCGCCTCCCTCGTGACGACGAAGCAC
CGAGGACGACGCGTTCGTCGCCCTCTGCCTCCCCTCTGCTTCTTTCCCGC
CCCCACCTCTCCCCCCACGGCCCTCCCCCCCATCCGTCGTCTTCAACGTG
CTAGCCACAAGGAATAATGTGCGGCATTTTGGCAGCCTTGTTGGGTGACG
CTGACACGCACGTTAACCAACTCATTGTCGATGGCTTGACCGTCTTGCAG
CACCGCGGGCAAGACGCCGCCGGCATCGTCACCTCCGAAAAAGGCCACCT
CAACCTGCGCAAGGACAATGGCCTCGTCTCCGAGGTCTTCCAGCAACATC
ACATGCTCATGCTCCGCGGTAATCTTGGGATCGGCCATGTCCGATACCCC
ACTGCAGGCACGTCGTCCTGCGCAGAGGCCCAACCGTTGTTCACCAACTA
CCCCTACGGCATCTGCGCGGCCCATAACGGCAACATCACGAATACCGGGG
AGTTGCGTGCAGCATTGGCACAGAGTCTGCGGCATATCAATACAGGGTCA
GACAGTGAGTTGCTGTTGAATGTGCTCGCGGAGGAATTGCAGGCTCAGCA
TAAGGGGAAGGATATTGTGCCTGCTGATATGTTCAAGGCTGTCAAGGAGG
TGATGGCGAGGTGCAAGGGGGCGTACGGGGTGGTTATGCTTGTGAACGGC
GTGGGCCTGTTAGGCTTCCGGGATCCACATGGGATTCGTCCACTTGTGTT
TGGGAAGCGTGAATCGACGACTAAACTCGGCGCCAGTGACTTTATCATGG
CTTCGGAAAGTGTCGCTATCGATACCTTGCGGTTTGACCTGGTCGGGGAC
GTTGGCCCCGGCGAAGCGCTCTTAATCACTACCGAAGGGACTTTGCATCG
GTCTCTCTGCGCAGAGAGCGCACAGCTGATACCGTGCATCTTCGAGTATG
TGTACTTCGCGCGCCCTGATTCCATCATGGACGGGGTGCAGGTGTACGAG
GCCCGGTTGAACATGGGAGAACGGCTGGCCAAAAACATCCTGCGAAAATA
CCCGGAACACGATATAGATGTGGTGATTCCAGTGCCGGACACGAGCCGGA
CCTCGGGTTTGTCGTGTGCGTATACGTTGGGGAGGCCGTTCAGGGAGGGG
TTCATTAAGAATCGGTACATCGCACGGACGTTTATCATGCCGGGGCAGGC
CGTGCGGATGAAGACGGTGCGAATGAAGTTGAATACGATTAAATCGGAGT
TTAGGGGTAAGAACGTATTGCTTGTCGATGATTCAATCGTCCGAGGAACG
ACGAGTCGGGAGTTGGTGAGCATGGCGAGGGAGGCCGGGGCGAGGAATGT
GTTCGTGACCTCTGCAGCACCTGCAGTCCGTTATCCGAATGTGTATGGCA
TTGACATCCCAACACGCGCGGAGTTGATTGCGAATGGGAGGGATGAAAGG
GAAGTCGCAGAAGAGTTGGGAGCGGATTGGGTCGTATATCAGGAGCTAGA
CGACTTGAAGGATAGCATTAGGAAGATCAATGGTACGATAAAGGAGTTCG
ACGCCTCATGTTTTGATGGTGTTTACGTCACGGGTGGAGTTAGTGATGCC
TACCTCGTGGAGCTCCAGGGCGGGAGGGGTAAGAAGCAACGGCATCATCA
GCAACAGACGGAGGTGTTGAGAAGTCGGTCAGAAGAGGGAAAGTTGAACG
GGATGGGGGAGTTGGAGGAGGAGGAAGGGGGCGTGACGGCCGCTACGATT
ACGCCTGCTGTTAATGGTGGTTGCAATGCTGCTGCCGCCGCTGCTGTTGC
GGTTGCAGAAGTCGCTGAAGTGGAGATTGCCAAAGCGAAGGCAGTGGCGG
CCTCCAAGCCGGGAGGAGCAAGTTCGAGTTCTGGGCCTTTAGGGAATGGA
TCGGACGGAGGGGGGGGGGCGTGCGAGGTGCTCTTCAATTTGGGCCGGGA
GACATAGGAGGGAAGGGGGAAGGGTGGCAACATAGCATACGTGTATTCCT
ACATATTTTGGAAGCGAGGGAGAGGAGAAGAGCAGGGGTGGGATGGGAAG
AGCTTCGGTAGTCTGGTGTTGTCTCGCCCTCAAGTTTTCCTTAACTAACT
CATAATTCATGTCATTACCATTATTTTTTAAAAAACACCATACTACAATT
ATCATAATTACTCTGATTCTAGCCGCCCGATGCCTTTGGGACAAAGATAA
GGGTGCGCTCATGCCTTCTACTTGTCTACAGCTGGCAAGTGAGTAATTCA
CTGGGAAGAGGAGATAGGAAAGAGATTTTGTCCTCAGGATCGATGGATGC
AAGAAAAAGAAATAGAAGAGAGTATGAAAATGGCCAAAAGATAAAGCAGA
CGACGAAAAAGAAAAAGAAGGACGGATAAGCTTTGGTCGAGCAGAA back to topprotein sequence of jgi.p|Nanoce1779_2|596521 >mRNA_6846-protein ID=mRNA_6846-protein|Name=jgi.p|Nanoce1779_2|596521|organism=Nannochloropsis oceanica|type=polypeptide|length=597bp
MCGILAALLGDADTHVNQLIVDGLTVLQHRGQDAAGIVTSEKGHLNLRKD
NGLVSEVFQQHHMLMLRGNLGIGHVRYPTAGTSSCAEAQPLFTNYPYGIC
AAHNGNITNTGELRAALAQSLRHINTGSDSELLLNVLAEELQAQHKGKDI
VPADMFKAVKEVMARCKGAYGVVMLVNGVGLLGFRDPHGIRPLVFGKRES
TTKLGASDFIMASESVAIDTLRFDLVGDVGPGEALLITTEGTLHRSLCAE
SAQLIPCIFEYVYFARPDSIMDGVQVYEARLNMGERLAKNILRKYPEHDI
DVVIPVPDTSRTSGLSCAYTLGRPFREGFIKNRYIARTFIMPGQAVRMKT
VRMKLNTIKSEFRGKNVLLVDDSIVRGTTSRELVSMAREAGARNVFVTSA
APAVRYPNVYGIDIPTRAELIANGRDEREVAEELGADWVVYQELDDLKDS
IRKINGTIKEFDASCFDGVYVTGGVSDAYLVELQGGRGKKQRHHQQQTEV
LRSRSEEGKLNGMGELEEEEGGVTAATITPAVNGGCNAAAAAAVAVAEVA
EVEIAKAKAVAASKPGGASSSSGPLGNGSDGGGGACEVLFNLGRET* back to topmRNA from alignment at scaffold_17:246430..249336+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6846 ID=mRNA_6846|Name=jgi.p|Nanoce1779_2|596521|organism=Nannochloropsis oceanica|type=mRNA|length=2907bp|location=Sequence derived from alignment at scaffold_17:246430..249336+ (Nannochloropsis oceanica)
AACAGGAGCTCTTCACCGTACACTGCGCCTCCCTCGTGACGACGAAGCAC
CGAGGACGACGCGTTCGTCGCCCTCTGCCTCCCCTCTGCTTCTTTCCCGC
CCCCACCTCTCCCCCCACGGCCCTCCCCCCCATCCGTCGTCTTCAACGTG
CTAGCCACAAGGAATAATGTGCGGCATTTTGGCAGCCTTGTTGGGTGACG
CTGACACGCACGTTAACCAACTCATTGTCGATGGCTTGACCGTCTTGCAG
CACCGCGGGCAAGGTAAGCAACCAATGGGCAAAAGGATGGGAACGAAGTG
TGATGTGCGGAAGGAATGAAGTGAGCGTGCAGCGCGACCCAATGTACGAG
ATAAATCTGTAAAGAGGCGGACAAGATGCGAGAGTAGGGCAGCTGTGCGT
GTGGCAGCTCTTCATCTCCCTCCACACACACCCGGCAGTTGCCCTCATAA
GGCACTATACTGCCGAATGAGGCACATTGTGAGGGCAATGGGTGTTATTC
TAATTATGCGATGCGGTGTCGGATACCAAATGCTCGAACTTCCTCCGGCA
TGCAATGTTTATAATCTTCTCAACCAAGCACCTCAACCTTCATCAATTCC
TCCCCTCTCTCCCTCCCTAATCGTCGCCGGTACCGTCACCTTCAAACAAG
GCCATGTCCACGATTCCCGCGAAGATCTCGACCCATCTCCGAGTCCTTCT
CTACAATGTCAAAGTCTCATTCACCCCATCTCTTTTCCCCTCCCTCCCTC
TCTCACCTCCTCTATCCCAACCAGACGCCGCCGGCATCGTCACCTCCGAA
AAAGGCCACCTCAACCTGCGCAAGGACAATGGCCTCGTCTCCGAGGTCTT
CCAGCAACATCACATGCTCATGCTCCGCGGTAATCTTGGGATCGGCCATG
TCCGATACCCCACTGCAGGCACGTCGTCCTGCGCAGAGGCCCAACCGTTG
TTCACCAACTACCCCTACGGCATCTGCGCGGCCCATAACGGCAACATCAC
GAATACCGGGGAGTTGCGTGCAGCATTGGCACAGAGTCTGCGGCATATCA
ATACAGGGTCAGACAGTGAGTTGCTGTTGAATGTGCTCGCGGAGGAATTG
CAGGCTCAGCATAAGGGGAAGGATATTGTGCCTGCTGATATGTTCAAGGC
TGTCAAGGAGGTGATGGCGAGGTGCAAGGGGGCGTACGGGGTGGTTATGC
TTGTGAACGGCGTGGGCCTGTTAGGCTTCCGGGATCCACATGGGATTCGT
CCACTTGTGTTTGGGAAGCGTGAATCGACGACTAAACTCGGCGCCAGTGA
CTTTATCATGGCTTCGGAAAGTGTCGCTATCGATACCTTGCGGTTTGACC
TGGTCGGGGACGTTGGCCCCGGCGAAGCGCTCTTAATCACTACCGAAGGG
ACTTTGCATCGGTCTCTCTGCGCAGAGAGCGCACAGCTGATACCGTGCAT
CTTCGAGTATGTGTACTTCGCGCGCCCTGATTCCATCATGGACGGGGTGC
AGGTGTACGAGGCCCGGTTGAACATGGGAGAACGGCTGGCCAAAAACATC
CTGCGAAAATACCCGGAACACGATATAGATGTGGTGATTCCAGTGCCGGA
CACGAGCCGGACCTCGGGTTTGTCGTGTGCGTATACGTTGGGGAGGCCGT
TCAGGGAGGGGTTCATTAAGAATCGGTACATCGCACGGACGTTTATCATG
CCGGGGCAGGCCGTGCGGATGAAGACGGTGCGAATGAAGTTGAATACGAT
TAAATCGGAGTTTAGGGGTAAGAACGTATTGCTTGTCGATGATTCAATCG
TCCGAGGAACGACGAGTCGGGAGTTGGTGAGCATGGCGAGGGAGGCCGGG
GCGAGGAATGTGTTCGTGACCTCTGCAGCACCTGCAGTCCGTTATCCGAA
TGTGTATGGCATTGACATCCCAACACGCGCGGAGTTGATTGCGAATGGGA
GGGATGAAAGGGAAGTCGCAGAAGAGTTGGGAGCGGATTGGGTCGTATAT
CAGGAGCTAGACGACTTGAAGGATAGCATTAGGAAGATCAATGGTACGAT
AAAGGAGTTCGACGCCTCATGTTTTGATGGTGTTTACGTCACGGGTGGAG
TTAGTGATGCCTACCTCGTGGAGCTCCAGGGCGGGAGGGGTAAGAAGCAA
CGGCATCATCAGCAACAGACGGAGGTGTTGAGAAGTCGGTCAGAAGAGGG
AAAGTTGAACGGGATGGGGGAGTTGGAGGAGGAGGAAGGGGGCGTGACGG
CCGCTACGATTACGCCTGCTGTTAATGGTGGTTGCAATGCTGCTGCCGCC
GCTGCTGTTGCGGTTGCAGAAGTCGCTGAAGTGGAGATTGCCAAAGCGAA
GGCAGTGGCGGCCTCCAAGCCGGGAGGAGCAAGTTCGAGTTCTGGGCCTT
TAGGGAATGGATCGGACGGAGGGGGGGGGGCGTGCGAGGTGCTCTTCAAT
TTGGGCCGGGAGACATAGGAGGGAAGGGGGAAGGGTGGCAACATAGCATA
CGTGTATTCCTACATATTTTGGAAGCGAGGGAGAGGAGAAGAGCAGGGGT
GGGATGGGAAGAGCTTCGGTAGTCTGGTGTTGTCTCGCCCTCAAGTTTTC
CTTAACTAACTCATAATTCATGTCATTACCATTATTTTTTAAAAAACACC
ATACTACAATTATCATAATTACTCTGATTCTAGCCGCCCGATGCCTTTGG
GACAAAGATAAGGGTGCGCTCATGCCTTCTACTTGTCTACAGCTGGCAAG
TGAGTAATTCACTGGGAAGAGGAGATAGGAAAGAGATTTTGTCCTCAGGA
TCGATGGATGCAAGAAAAAGAAATAGAAGAGAGTATGAAAATGGCCAAAA
GATAAAGCAGACGACGAAAAAGAAAAAGAAGGACGGATAAGCTTTGGTCG
AGCAGAA back to topCoding sequence (CDS) from alignment at scaffold_17:246430..249336+ >mRNA_6846 ID=mRNA_6846|Name=jgi.p|Nanoce1779_2|596521|organism=Nannochloropsis oceanica|type=CDS|length=3582bp|location=Sequence derived from alignment at scaffold_17:246430..249336+ (Nannochloropsis oceanica)
ATGTGCGGCATTTTGGCAGCCTTGTTGGGTGACGCTGACACGCACGTTAA
CCAACTCATTGTCGATGGCTTGACCGTCTTGCAGCACCGCGGGCAAGACG
CCGCCGGCATCGTCACCTCCGAAAAAGGCCACCTCAACCTGCGCAAGGAC
AATGGCCTCGTCTCCGAGGTCTTCCAGCAACATCACATGCTCATGCTCCG
CGGTAATCTTGGGATCGGCCATGTCCGATACCCCACTGCAGGCACGTCGT
CCTGCGCAGAGGCCCAACCGTTGTTCACCAACTACCCCTACGGCATCTGC
GCGGCCCATAACGGCAACATCACGAATACCGGGGAGTTGCGTGCAGCATT
GGCACAGAGTCTGCGGCATATCAATACAGGGTCAGACAGTGAGTTGCTGT
TGAATGTGCTCGCGGAGGAATTGCAGGCTCAGCATAAGGGGAAGGATATT
GTGCCTGCTGATATGTTCAAGGCTGTCAAGGAGGTGATGGCGAGGTGCAA
GGGGGCGTACGGGGTGGTTATGCTTGTGAACGGCGTGGGCCTGTTAGGCT
TCCGGGATCCACATGGGATTCGTCCACTTGTGTTTGGGAAGCGTGAATCG
ACGACTAAACTCGGCGCCAGTGACTTTATCATGGCTTCGGAAAGTGTCGC
TATCGATACCTTGCGGTTTGACCTGGTCGGGGACGTTGGCCCCGGCGAAG
CGCTCTTAATCACTACCGAAGGGACTTTGCATCGGTCTCTCTGCGCAGAG
AGCGCACAGCTGATACCGTGCATCTTCGAGTATGTGTACTTCGCGCGCCC
TGATTCCATCATGGACGGGGTGCAGGTGTACGAGGCCCGGTTGAACATGG
GAGAACGGCTGGCCAAAAACATCCTGCGAAAATACCCGGAACACGATATA
GATGTGGTGATTCCAGTGCCGGACACGAGCCGGACCTCGGGTTTGTCGTG
TGCGTATACGTTGGGGAGGCCGTTCAGGGAGGGGTTCATTAAGAATCGGT
ACATCGCACGGACGTTTATCATGCCGGGGCAGGCCGTGCGGATGAAGACG
GTGCGAATGAAGTTGAATACGATTAAATCGGAGTTTAGGGGTAAGAACGT
ATTGCTTGTCGATGATTCAATCGTCCGAGGAACGACGAGTCGGGAGTTGG
TGAGCATGGCGAGGGAGGCCGGGGCGAGGAATGTGTTCGTGACCTCTGCA
GCACCTGCAGTCCGTTATCCGAATGTGTATGGCATTGACATCCCAACACG
CGCGGAGTTGATTGCGAATGGGAGGGATGAAAGGGAAGTCGCAGAAGAGT
TGGGAGCGGATTGGGTCGTATATCAGGAGCTAGACGACTTGAAGGATAGC
ATTAGGAAGATCAATGGTACGATAAAGGAGTTCGACGCCTCATGTTTTGA
TGGTGTTTACGTCACGGGTGGAGTTAGTGATGCCTACCTCGTGGAGCTCC
AGGGCGGGAGGGGTAAGAAGCAACGGCATCATCAGCAACAGACGGAGGTG
TTGAGAAGTCGGTCAGAAGAGGGAAAGTTGAACGGGATGGGGGAGTTGGA
GGAGGAGGAAGGGGGCGTGACGGCCGCTACGATTACGCCTGCTGTTAATG
GTGGTTGCAATGCTGCTGCCGCCGCTGCTGTTGCGGTTGCAGAAGTCGCT
GAAGTGGAGATTGCCAAAGCGAAGGCAGTGGCGGCCTCCAAGCCGGGAGG
AGCAAGTTCGAGTTCTGGGCCTTTAGGGAATGGATCGGACGGAGGGGGGG
GGGCGTGCGAGGTGCTCTTCAATTTGGGCCGGGAGACATAGATGTGCGGC
ATTTTGGCAGCCTTGTTGGGTGACGCTGACACGCACGTTAACCAACTCAT
TGTCGATGGCTTGACCGTCTTGCAGCACCGCGGGCAAGACGCCGCCGGCA
TCGTCACCTCCGAAAAAGGCCACCTCAACCTGCGCAAGGACAATGGCCTC
GTCTCCGAGGTCTTCCAGCAACATCACATGCTCATGCTCCGCGGTAATCT
TGGGATCGGCCATGTCCGATACCCCACTGCAGGCACGTCGTCCTGCGCAG
AGGCCCAACCGTTGTTCACCAACTACCCCTACGGCATCTGCGCGGCCCAT
AACGGCAACATCACGAATACCGGGGAGTTGCGTGCAGCATTGGCACAGAG
TCTGCGGCATATCAATACAGGGTCAGACAGTGAGTTGCTGTTGAATGTGC
TCGCGGAGGAATTGCAGGCTCAGCATAAGGGGAAGGATATTGTGCCTGCT
GATATGTTCAAGGCTGTCAAGGAGGTGATGGCGAGGTGCAAGGGGGCGTA
CGGGGTGGTTATGCTTGTGAACGGCGTGGGCCTGTTAGGCTTCCGGGATC
CACATGGGATTCGTCCACTTGTGTTTGGGAAGCGTGAATCGACGACTAAA
CTCGGCGCCAGTGACTTTATCATGGCTTCGGAAAGTGTCGCTATCGATAC
CTTGCGGTTTGACCTGGTCGGGGACGTTGGCCCCGGCGAAGCGCTCTTAA
TCACTACCGAAGGGACTTTGCATCGGTCTCTCTGCGCAGAGAGCGCACAG
CTGATACCGTGCATCTTCGAGTATGTGTACTTCGCGCGCCCTGATTCCAT
CATGGACGGGGTGCAGGTGTACGAGGCCCGGTTGAACATGGGAGAACGGC
TGGCCAAAAACATCCTGCGAAAATACCCGGAACACGATATAGATGTGGTG
ATTCCAGTGCCGGACACGAGCCGGACCTCGGGTTTGTCGTGTGCGTATAC
GTTGGGGAGGCCGTTCAGGGAGGGGTTCATTAAGAATCGGTACATCGCAC
GGACGTTTATCATGCCGGGGCAGGCCGTGCGGATGAAGACGGTGCGAATG
AAGTTGAATACGATTAAATCGGAGTTTAGGGGTAAGAACGTATTGCTTGT
CGATGATTCAATCGTCCGAGGAACGACGAGTCGGGAGTTGGTGAGCATGG
CGAGGGAGGCCGGGGCGAGGAATGTGTTCGTGACCTCTGCAGCACCTGCA
GTCCGTTATCCGAATGTGTATGGCATTGACATCCCAACACGCGCGGAGTT
GATTGCGAATGGGAGGGATGAAAGGGAAGTCGCAGAAGAGTTGGGAGCGG
ATTGGGTCGTATATCAGGAGCTAGACGACTTGAAGGATAGCATTAGGAAG
ATCAATGGTACGATAAAGGAGTTCGACGCCTCATGTTTTGATGGTGTTTA
CGTCACGGGTGGAGTTAGTGATGCCTACCTCGTGGAGCTCCAGGGCGGGA
GGGGTAAGAAGCAACGGCATCATCAGCAACAGACGGAGGTGTTGAGAAGT
CGGTCAGAAGAGGGAAAGTTGAACGGGATGGGGGAGTTGGAGGAGGAGGA
AGGGGGCGTGACGGCCGCTACGATTACGCCTGCTGTTAATGGTGGTTGCA
ATGCTGCTGCCGCCGCTGCTGTTGCGGTTGCAGAAGTCGCTGAAGTGGAG
ATTGCCAAAGCGAAGGCAGTGGCGGCCTCCAAGCCGGGAGGAGCAAGTTC
GAGTTCTGGGCCTTTAGGGAATGGATCGGACGGAGGGGGGGGGGCGTGCG
AGGTGCTCTTCAATTTGGGCCGGGAGACATAG back to top
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