jgi.p|Nanoce1779_2|596517, mRNA_6845 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596517
Unique NamemRNA_6845
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length856
Alignment locationscaffold_17:242479..243334 -

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Properties
Property NameValue
TranscriptId596603
TrackFilteredModels2
ProteinId596517
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:242479..243334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596517gene_6845Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596517mRNA_6845-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6845CDS_6845Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6845 ID=mRNA_6845|Name=jgi.p|Nanoce1779_2|596517|organism=Nannochloropsis oceanica|type=mRNA|length=856bp
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTTTCTTCCGACCAAG
GATGAGGGTGAAGGAGAGGAAAGGAAGGTATGCGTCCCTCCCCCTACCTC
ACGACCTCGCCCTTCCGACTGCCCATCCTCCAGCGGGGAAGCCGATGACG
ACCACCGCAAGTGCAACTCTTCCTCCCTCCCACCCTTCCTTCCTCCCTCA
TCCAATTTCTCCTCCTCCTCCCGCTCACGCTGCTCCTGACGTCGACGAAT
TTCCTCCTTTTCCAAAATCTGTTCTCGCAACGCCGCGGCATATCGCGCCT
TCATTTCAAACGCCGTCCTCTCCCTTGCTGCTTCCCCCTCTTTCTCCCCC
CCTCCCTCCCACTCTCTGCCCTCCATACGCAAGAGGCGAGAGGTCGGCGT
GGACACCATGGGCGAAGAGGATGGGTTGGAGGACGGAACCGAGGACGGGG
ACGGAAGAGAAGAGGATGAGATGCCGACACTCTTCTTCCTCCTTCCCTCA
ATAGCAGGAAACAGATCTCCCCCCCTCTCCTCTCTCTCCTTCTCCCCCTC
CTCCAAGAGTACGCCAATCCTTTCCCCTCTCCTCAAGAGCCTTCGGACAC
TCGGGGGGGACAAAACTAACATGCCCTCCAACTCTAACTGTCGTCTCTTC
TCCCTCAATTGCTCGTCTAGGGCCAACGCGTAGGCAGTTTTCTGCTCCTG
CTTCGCTCGAGCCTGCTCCTCCTCCCCACGAGGGCCCGTGTGCATTGAGT
GGAGCCCACCGTGACGACGACGATAGTGAGAAGGACAGGCTTCTTGTCGC
TGTTGCTGCTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTG
TTGTTG
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protein sequence of jgi.p|Nanoce1779_2|596517

>mRNA_6845-protein ID=mRNA_6845-protein|Name=jgi.p|Nanoce1779_2|596517|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MRVKERKGRYASLPLPHDLALPTAHPPAGKPMTTTASATLPPSHPSFLPH
PISPPPPAHAAPDVDEFPPFPKSVLATPRHIAPSFQTPSSPLLLPPLSPP
LPPTLCPPYARGERSAWTPWAKRMGWRTEPRTGTEEKRMRCRHSSSSFPQ
*
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mRNA from alignment at scaffold_17:242479..243334-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6845 ID=mRNA_6845|Name=jgi.p|Nanoce1779_2|596517|organism=Nannochloropsis oceanica|type=mRNA|length=856bp|location=Sequence derived from alignment at scaffold_17:242479..243334- (Nannochloropsis oceanica)
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTTTCTTCCGACCAAG
GATGAGGGTGAAGGAGAGGAAAGGAAGGTATGCGTCCCTCCCCCTACCTC
ACGACCTCGCCCTTCCGACTGCCCATCCTCCAGCGGGGAAGCCGATGACG
ACCACCGCAAGTGCAACTCTTCCTCCCTCCCACCCTTCCTTCCTCCCTCA
TCCAATTTCTCCTCCTCCTCCCGCTCACGCTGCTCCTGACGTCGACGAAT
TTCCTCCTTTTCCAAAATCTGTTCTCGCAACGCCGCGGCATATCGCGCCT
TCATTTCAAACGCCGTCCTCTCCCTTGCTGCTTCCCCCTCTTTCTCCCCC
CCTCCCTCCCACTCTCTGCCCTCCATACGCAAGAGGCGAGAGGTCGGCGT
GGACACCATGGGCGAAGAGGATGGGTTGGAGGACGGAACCGAGGACGGGG
ACGGAAGAGAAGAGGATGAGATGCCGACACTCTTCTTCCTCCTTCCCTCA
ATAGCAGGAAACAGATCTCCCCCCCTCTCCTCTCTCTCCTTCTCCCCCTC
CTCCAAGAGTACGCCAATCCTTTCCCCTCTCCTCAAGAGCCTTCGGACAC
TCGGGGGGGACAAAACTAACATGCCCTCCAACTCTAACTGTCGTCTCTTC
TCCCTCAATTGCTCGTCTAGGGCCAACGCGTAGGCAGTTTTCTGCTCCTG
CTTCGCTCGAGCCTGCTCCTCCTCCCCACGAGGGCCCGTGTGCATTGAGT
GGAGCCCACCGTGACGACGACGATAGTGAGAAGGACAGGCTTCTTGTCGC
TGTTGCTGCTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTG
TTGTTG
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Coding sequence (CDS) from alignment at scaffold_17:242479..243334-

>mRNA_6845 ID=mRNA_6845|Name=jgi.p|Nanoce1779_2|596517|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_17:242479..243334- (Nannochloropsis oceanica)
ATGAGGGTGAAGGAGAGGAAAGGAAGGTATGCGTCCCTCCCCCTACCTCA
CGACCTCGCCCTTCCGACTGCCCATCCTCCAGCGGGGAAGCCGATGACGA
CCACCGCAAGTGCAACTCTTCCTCCCTCCCACCCTTCCTTCCTCCCTCAT
CCAATTTCTCCTCCTCCTCCCGCTCACGCTGCTCCTGACGTCGACGAATT
TCCTCCTTTTCCAAAATCTGTTCTCGCAACGCCGCGGCATATCGCGCCTT
CATTTCAAACGCCGTCCTCTCCCTTGCTGCTTCCCCCTCTTTCTCCCCCC
CTCCCTCCCACTCTCTGCCCTCCATACGCAAGAGGCGAGAGGTCGGCGTG
GACACCATGGGCGAAGAGGATGGGTTGGAGGACGGAACCGAGGACGGGGA
CGGAAGAGAAGAGGATGAGATGCCGACACTCTTCTTCCTCCTTCCCTCAA
TAG
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Synonyms
Publications