jgi.p|Nanoce1779_2|596516, mRNA_6844 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596516
Unique NamemRNA_6844
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1441
Alignment locationscaffold_17:240839..242406 -

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Properties
Property NameValue
TranscriptId596602
TrackFilteredModels2
ProteinId596516
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:240839..242406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596516gene_6844Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596516mRNA_6844-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6844CDS_6844Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6844 ID=mRNA_6844|Name=jgi.p|Nanoce1779_2|596516|organism=Nannochloropsis oceanica|type=mRNA|length=1441bp
GCCCGCCACTCGTCCGTTGTTGCTGCTCACACTGTTGCTGCTGCTCTTGC
ATTTCTTCGTCTTCCCGTGCTTCTGCTTTTTATCCGAAATACTCGACACC
GACTGCTGCTGCTGCTGCTGCTGCTTTCCCCACGGGCTAGCACGGACCTG
CTCTTCCAAGGCGCGAGCATACATCTGCTGCTGCTGCTGACGCTTCTTCC
TATTCATCTCCCCATCTTCAGGCGAAGCGTAGAGGGAAGCTAAGCCCCGT
CCGAACATGGCGCTACTCCCTGCCTTTGAGTAGGGTGAGGGAGTGGAGGT
GGATGACGGTTTCCCGGCAGGGATCACAGAGGAGGGGACGGGTGGTAAGG
AGGAGCGGGAGGAAACGGAGGAGGCATGTGTGTTGTCATAATTGTCTTCC
GAGCGCTCTAGGGAAAGGACGCGGCGGGAGGTGATGGAGGAAGAACGGTG
AGAGGATGACGAAGAGCGGTGATACTGCTGCGTGACTGGCGCGTGCATTA
GGGACTCTTCTTCGTCCTCCTTTTCCTCCATCCATTCCTCCTCCTCGTCT
TCCTGCACACTCCCCCCAGCCGAGCTACCAATCACGTCTTCTCCACGCAC
GAGCATTCGCCTTGCCCTATCGCCCCTGCTAATGCTGCTCCTATGGCTAG
TCGCAAGCCTCCCCTTTGCCGCCAACTCGGCCTCCAGCCTGCGCATTTCT
ATCTTCACCAAAGCTTCGAAGGACGCGTCTTTCAGACTTCCTTCCTCACC
ACCTTCATCCTCTATGTCTTCCTCCTCCTCTTCCTCACATTCTGCTACAT
CGTCTTCGTCTTCATCGTCGTCAACCACTTCTTCTTGCGCAACAAACCGC
TCATAGCGTTCCCTTCGGTCATTGACGGAAGGTGGAGAAGTCACCAGCAA
AGGCAGCTTGGAGCTTCTCGTCGTGGTAGTGGTGCTGTGCGCATCGTTCT
CTTTCCTCTCCATTCCCTGACCCTCGCCCTCATCCTCATTCTCCTCATCA
TCCACATAAAAAGAAGAAGAAGACACTTGCCCATTGCTATGGGGAGTATG
AACCAAAGGCGGCAAGGGCGAAGACATGATGCTAGTGCTGCTGTGTGCGT
GGGTGTTGTTGCTTCCGTGCCCCAAGGAGTAGCCAAGGCTTCCGCGGCTC
GTGTAAAGTGCAGGCAATTTTTGATCCTCCGCAGGAGGGATTTGGCTGCT
TCCGCTGCTACTGTTGAGCGCACCGTTCCCCGAGGAAGAGGACAAGGAGG
GTTTTGGCATCACCAAGGGCTCGAGGCGAGGCTGCAGCCCACTGCTTCGC
CGCTTTCGCTGCTGCCGCTGCGGAGTGGACTTGGACGTTGTCGCTCGTCC
AACCCATCCCTTCTTCCCCACCGTCGCGCGCTCCCCTTGCCCTATCTCAA
CAGGCCACCACGATGGCATGGAAGACGCCGTGGTCGTGCCT
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protein sequence of jgi.p|Nanoce1779_2|596516

>mRNA_6844-protein ID=mRNA_6844-protein|Name=jgi.p|Nanoce1779_2|596516|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MASRKPPLCRQLGLQPAHFYLHQSFEGRVFQTSFLTTFILYVFLLLFLTF
CYIVFVFIVVNHFFLRNKPLIAFPSVIDGRWRSHQQRQLGASRRGSGAVR
IVLFPLHSLTLALILILLIIHIKRRRRHLPIAMGSMNQRRQGRRHDASAA
VCVGVVASVPQGVAKASAARVKCRQFLILRRRDLAASAATVERTVPRGRG
QGGFWHHQGLEARLQPTASPLSLLPLRSGLGRCRSSNPSLLPHRRALPLP
YLNRPPRWHGRRRGRA
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mRNA from alignment at scaffold_17:240839..242406-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6844 ID=mRNA_6844|Name=jgi.p|Nanoce1779_2|596516|organism=Nannochloropsis oceanica|type=mRNA|length=1568bp|location=Sequence derived from alignment at scaffold_17:240839..242406- (Nannochloropsis oceanica)
GCCCGCCACTCGTCCGTTGTTGCTGCTCACACTGTTGCTGCTGCTCTTGC
ATTTCTTCGTCTTCCCGTGCTTCTGCTTTTTATCCGAAATACTCGACACC
GACTGCTGCTGCTGCTGCTGCTGCTTTCCCCACGGGCTAGCACGGACCTG
CTCTTCCAAGGCGCGAGCATACATCTGCTGCTGCTGCTGACGCTTCTTCC
TATTCATCTCCCCATCTTCAGGCGAAGCGTAGAGGGAAGCTAAGCCCCGT
CCGAACATGGCGCTACTCCCTGCCTTTGAGTAGGGTGAGGGAGTGGAGGT
GGATGACGGTTTCCCGGCAGGGATCACAGAGGAGGGGACGGGTGGTAAGG
AGGAGCGGGAGGAAACGGAGGAGGCATGTGTGTTGTCATAATTGTCTTCC
GAGCGCTCTAGGGAAAGGACGCGGCGGGAGGTGATGGAGGAAGAACGGTG
AGAGGATGACGAAGAGCGGTGATACTGCTGCGTGACTGGCGCGTGCATTA
GGGACTCTTCTTCGTCCTCCTTTTCCTCCATCCATTCCTCCTCCTCGTCT
TCCTGCACACTCCCCCCAGCCGAGCTACCAATCACGTCTTCTCCACGCAC
GAGCATTCGCCTTGCCCTATCGCCCCTGCTAATGCTGCTCCTATGGCTAG
TCGCAAGCCTCCCCTTTGCCGCCAACTCGGCCTCCAGCCTGCGCATTTCT
ATCTTCACCAAAGCTTCGAAGGACGCGTCTTTCAGACTTCCTTCCTCACC
ACCTTCATCCTCTATGTCTTCCTCCTCCTCTTCCTCACATTCTGCTACAT
CGTCTTCGTCTTCATCGTCGTCAACCACTTCTTCTTGCGCAACAAACCGC
TCATAGCGTTCCCTTCGGTCATTGACGGAAGGTGGAGAAGTCACCAGCAA
AGGCAGCTTGGAGCTTCTCGTCGTGGTAGTGGTGCTGTGCGCATCGTTCT
CTTTCCTCTCCATTCCCTGACCCTCGCCCTCATCCTCATTCTCCTCATCA
TCCACATAAAAAGAAGAAGAAGACACTTGCCCATTGCTATGGGGAGTATG
AACCAAAGGCGGCAAGGGCGAAGACATGATGCTAGTGCTGCTGTGTGCGT
GGGTGTTGTTGCTTCCGTGCCCCAAGGAGTAGCCAAGGCTTCCGCGGCTC
GTGTAAAGTGCAGGCAATTTTTGATCCTCCTATAAATGAGGAGAGAAGGA
TAGAAAAATGGGTTGTGAGTGAGGTGGTGGATTGCAGAGCAGAGAAGCTG
AATTTCGCAAATCAATTACACGCGACATGACCAGGGGTCCAGTTGGTGGA
GCTTACCGCAGGAGGGATTTGGCTGCTTCCGCTGCTACTGTTGAGCGCAC
CGTTCCCCGAGGAAGAGGACAAGGAGGGTTTTGGCATCACCAAGGGCTCG
AGGCGAGGCTGCAGCCCACTGCTTCGCCGCTTTCGCTGCTGCCGCTGCGG
AGTGGACTTGGACGTTGTCGCTCGTCCAACCCATCCCTTCTTCCCCACCG
TCGCGCGCTCCCCTTGCCCTATCTCAACAGGCCACCACGATGGCATGGAA
GACGCCGTGGTCGTGCCT
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Coding sequence (CDS) from alignment at scaffold_17:240839..242406-

>mRNA_6844 ID=mRNA_6844|Name=jgi.p|Nanoce1779_2|596516|organism=Nannochloropsis oceanica|type=CDS|length=1598bp|location=Sequence derived from alignment at scaffold_17:240839..242406- (Nannochloropsis oceanica)
CGCAGGAGGGATTTGGCTGCTTCCGCTGCTACTGTTGAGCGCACCGTTCC
CCGAGGAAGAGGACAAGGAGGGTTTTGGCATCACCAAGGGCTCGAGGCGA
GGCTGCAGCCCACTGCTTCGCCGCTTTCGCTGCTGCCGCTGCGGAGTGGA
CTTGGACGTTGTCGCTCGTCCAACCCATCCCTTCTTCCCCACCGTCGCGC
GCTCCCCTTGCCCTATCTCAACAGGCCACCACGATGGCATGGAAGACGCC
GTGGTCGTGCCTATGGCTAGTCGCAAGCCTCCCCTTTGCCGCCAACTCGG
CCTCCAGCCTGCGCATTTCTATCTTCACCAAAGCTTCGAAGGACGCGTCT
TTCAGACTTCCTTCCTCACCACCTTCATCCTCTATGTCTTCCTCCTCCTC
TTCCTCACATTCTGCTACATCGTCTTCGTCTTCATCGTCGTCAACCACTT
CTTCTTGCGCAACAAACCGCTCATAGCGTTCCCTTCGGTCATTGACGGAA
GGTGGAGAAGTCACCAGCAAAGGCAGCTTGGAGCTTCTCGTCGTGGTAGT
GGTGCTGTGCGCATCGTTCTCTTTCCTCTCCATTCCCTGACCCTCGCCCT
CATCCTCATTCTCCTCATCATCCACATAAAAAGAAGAAGAAGACACTTGC
CCATTGCTATGGGGAGTATGAACCAAAGGCGGCAAGGGCGAAGACATGAT
GCTAGTGCTGCTGTGTGCGTGGGTGTTGTTGCTTCCGTGCCCCAAGGAGT
AGCCAAGGCTTCCGCGGCTCGTGTAAAGTGCAGGCAATTTTTGATCCTCC
GCAGGAGGGATTTGGCTGCTTCCGCTGCTACTGTTGAGCGCACCGTTCCC
CGAGGAAGAGGACAAGGAGGGTTTTGGCATCACCAAGGGCTCGAGGCGAG
GCTGCAGCCCACTGCTTCGCCGCTTTCGCTGCTGCCGCTGCGGAGTGGAC
TTGGACGTTGTCGCTCGTCCAACCCATCCCTTCTTCCCCACCGTCGCGCG
CTCCCCTTGCCCTATCTCAACAGGCCACCACGATGGCATGGAAGACGCCG
TGGTCGTGCCTATGGCTAGTCGCAAGCCTCCCCTTTGCCGCCAACTCGGC
CTCCAGCCTGCGCATTTCTATCTTCACCAAAGCTTCGAAGGACGCGTCTT
TCAGACTTCCTTCCTCACCACCTTCATCCTCTATGTCTTCCTCCTCCTCT
TCCTCACATTCTGCTACATCGTCTTCGTCTTCATCGTCGTCAACCACTTC
TTCTTGCGCAACAAACCGCTCATAGCGTTCCCTTCGGTCATTGACGGAAG
GTGGAGAAGTCACCAGCAAAGGCAGCTTGGAGCTTCTCGTCGTGGTAGTG
GTGCTGTGCGCATCGTTCTCTTTCCTCTCCATTCCCTGACCCTCGCCCTC
ATCCTCATTCTCCTCATCATCCACATAAAAAGAAGAAGAAGACACTTGCC
CATTGCTATGGGGAGTATGAACCAAAGGCGGCAAGGGCGAAGACATGATG
CTAGTGCTGCTGTGTGCGTGGGTGTTGTTGCTTCCGTGCCCCAAGGAGTA
GCCAAGGCTTCCGCGGCTCGTGTAAAGTGCAGGCAATTTTTGATCCTC
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Synonyms
Publications