jgi.p|Nanoce1779_2|544449, mRNA_6843 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|544449
Unique Name	mRNA_6843
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2705
Alignment location	scaffold_17:237469..240325 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	544535
Track	FilteredModels2
ProteinId	544449

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:237469..240325 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|544449	gene_6843	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|544449	mRNA_6843-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6843	CDS_6843	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:237469..240325+
coding sequence from alignment at scaffold_17:237469..240325+

mRNA sequence

>mRNA_6843 ID=mRNA_6843|Name=jgi.p|Nanoce1779_2|544449|organism=Nannochloropsis oceanica|type=mRNA|length=2705bp
TAAAAATTAAACAAAAGAGCAGGCACTGGCAGGAGGTTGAATTTTTCGAA
ATCCCTGTATACGTAAACTGCTTCTGTTCGTGATCCTTCCATCGCACAAG
TGCCGCGGCCTCTAAGGTCACCCAACCCAAACCCACAGTAACAACGTGCT
GTCTCATTAAGGTAGTACTCTTATCTGCTTTTGCATGCAGATGCGCTCAA
GTCGTCCCCAAGCAATTCGCAAAGAGGGCATTCGTCCCTCACGAGTCAGT
TGTTGCCAGAGGGACGCACTCTCACAACTGCTGATGAAGTCTAGAGGAGA
CAAGCCCAATGATTTTTTCCATCACCCGCACTCCCTCACCACAGTGCTAC
GGATGTAGTCTTTATGGCCGTGCCTTGGTGGTGCATCGAGCGCCGCAGCT
CCTCAAAATGCCATAGCTAATCGCGCCTCTTTCCCTCTCACACCCTTCCC
GCCTATAGCTCAGTCGGTCGTACACGACCATTCAAGACGAAGACCATGGC
CGCAGGAGGAATTTCCGGGGGAAATACTACCAGTATGCAAGCGTCATCCT
CTCCGCTCTTTCTGGGGATCGACCTTTCCACCCAGAGCATCACGGTGGTT
TTTGTTGAGGCAGGTGGTCGTGTGGTCCACCTCGACACGCTCAACTTTGA
CCGGGACTTGGCGCAGTTTGGCACGGTCGCGGGCATGCACGTGGGAAAAC
ACGGCAAGGTCACAAGTCCTGTCCAGATGTGGTTGGAGGGCCTTGACCGG
GTGCTGCGCCGCCAAGACCGTGCGACCATGGCCCGTGTCAAAGCCGTATC
GGGCTCGGCGCAGCAGCACGGGAGTGTGTTCTGGAACGCCAATGGCCTGC
ATGCGTTGCGTAATATGGCGCCTGCGGACAGTTTTTCCACGAACCTATTT
GATGGCTTTGCGTTAGAGGACTGCCCGATCTGGGCTGATTCATCGACGAC
GGCCGAATGTGAGGCAATCGAGAAAGCTGTAGGTGGCCCTGCAAAGATGG
CGGCCTTAACAGGCTCTCGGGCGTACTGTCGCTTCACAGGCCCGCAAATT
GCCAAAATTTCGCGCACGCAGCCATTGGTTTGGAAGCACACGGCGCGCGT
CTCGCTCGTGTCATCGTTTTTGACGTCGCTTTTGGTAGGACACCCGGCGC
CGGTGGACGCCTCCGATGCTTCAGGGATGAATTTGATGAACGTGCACACC
TTGGAGTGGTCAGAGGAGCTTCTGGAAGCCACGGCACCGGGTCTGGCTGC
ACGTTTGGGGACGATCACCGAGAGCTGGGCATCTGCAGGTCCGATTTCGC
CTTACTGTGCGGCGCGCTTTGGGTTTGCGGCCGATTGCCTGGTTATTCCC
GCCTCGGGCGACAATAATTGCTCGGTGGTGGGAATGGGGTTGGGGTGTGA
CGCAGCTTCGACCACGTTGATGGTAAGTCTAGGAACGTCGGACACAATAG
TGGGATTGACTCGTAACCCCCATCCGGGGTTGGAGGGGCATGTGATGGTC
TCGCCTCGAGGGCCGGAGGAATGGTTCGCCATGTTGTGTTATAAGAATGC
AGCGCTGGCACGGGAGGCGGTGCGGGACGCAGTGGCGGGGGGGAAGTGGG
AGAGGTTTTCGGAGTTGGTTGCAGAGGCCCCAGCGGGGAATGACGGGAAT
TTGGGACTGACGTTGGTGATGGAAGAAATTGTGCCGGTGTTGAGTGTGAA
GGGGACGTTTCGGGTGGACAGGCAGGGGGAAAGGGTGGGGGAGTTTGGGA
GTGCGGCTTATGAGGCGAGGGCGGTGGTTGAAGCGAGGTTTCTGTCCATG
AAGGCACATGCGGCTCAGTTGGGTTTGTCGACGAACCCGACCCGGATTGT
GGCGACGGGTGGAGGGTCGACGAGCAAGGTGATGATGCAAGTGCTTGCGG
ATGTATTTAATGCCCAGGTTTTGGTGGCGGACACCTCGGACGCGGCTGCA
GTGGGGGCAGCTTTGCGGGCGGAGCATGGATTGGCATGTCGGAAGCAGGC
AAGGTGGGTGGAGTATGAGGTGAGGCAACCGCAGGGGTTGAAGGTGGTGG
CAAGCCCGAATGCTGAGGCTGCTGCTGTATATTCGCCGGCGGTGTTGAAA
CGATTCTTAGACTTTGAGAGGGGGCTGGCGATGCAGGGACAGGCGCAACA
GCAGCAGGCGTAGAAGTGTAAGGAGAAGTATGTAGAGTACGTATGCAGGT
TCAAAGGAGAGGTGAGAAGGAAAACTTTAGACATTTTTTGAATATTTTGT
TTTACGGTATGTCAGGGAGTAAGTGGGGGGTATGTGACTCATGAAATGAA
GGGAAAAGAAGAGGAAATTAGATTGGATACAAACCATAGAAGCAAAGGTA
CGTGGAAGGGATGAAAAAAGGGGGGGGCACCAATGTACGCTGTATAGAAA
GAAGGAGCAAACAAGAACAGGCTCACTCAGACAGTGTACATTTTTTGTTT
GCCGTAAATGTTGTCTCGTTAACGAAGCACCTCACTGTTGCTTGTCCCCA
ATGTGTATCTGTTGTCACGAGGGTCTTCCAGATTGCATCCTCCCCCTGCT
GAAATTTCCATTTTCATCGACCAAGCCGAACTCCGGCCGAAAAAGAAGAA
GTTTAGATGACCGCAAATCAATGCCCACCATAGCAAGGAAACGCAGGCAC
TTCTCCATCAAAGGTCTTCCGTTGCATTATCATTATTATTATTATTATTA
TTATA

protein sequence of jgi.p|Nanoce1779_2|544449

>mRNA_6843-protein ID=mRNA_6843-protein|Name=jgi.p|Nanoce1779_2|544449|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MAAGGISGGNTTSMQASSSPLFLGIDLSTQSITVVFVEAGGRVVHLDTLN
FDRDLAQFGTVAGMHVGKHGKVTSPVQMWLEGLDRVLRRQDRATMARVKA
VSGSAQQHGSVFWNANGLHALRNMAPADSFSTNLFDGFALEDCPIWADSS
TTAECEAIEKAVGGPAKMAALTGSRAYCRFTGPQIAKISRTQPLVWKHTA
RVSLVSSFLTSLLVGHPAPVDASDASGMNLMNVHTLEWSEELLEATAPGL
AARLGTITESWASAGPISPYCAARFGFAADCLVIPASGDNNCSVVGMGLG
CDAASTTLMVSLGTSDTIVGLTRNPHPGLEGHVMVSPRGPEEWFAMLCYK
NAALAREAVRDAVAGGKWERFSELVAEAPAGNDGNLGLTLVMEEIVPVLS
VKGTFRVDRQGERVGEFGSAAYEARAVVEARFLSMKAHAAQLGLSTNPTR
IVATGGGSTSKVMMQVLADVFNAQVLVADTSDAAAVGAALRAEHGLACRK
QARWVEYEVRQPQGLKVVASPNAEAAAVYSPAVLKRFLDFERGLAMQGQA
QQQQA*

mRNA from alignment at scaffold_17:237469..240325+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6843 ID=mRNA_6843|Name=jgi.p|Nanoce1779_2|544449|organism=Nannochloropsis oceanica|type=mRNA|length=2857bp|location=Sequence derived from alignment at scaffold_17:237469..240325+ (Nannochloropsis oceanica)
TAAAAATTAAACAAAAGAGCAGGCACTGGCAGGAGGTTGAATTTTTCGAA
ATCCCTGTATACGTAAACTGCTTCTGTTCGTGATCCTTCCATCGCACAAG
TGCCGCGGCCTCTAAGGTCACCCAACCCAAACCCACAGTAACAACGTGCT
GTCTCATTAAGGTAGTACTCTTATCTGCTTTTGCATGCAGATGCGCTCAA
GTCGTCCCCAAGCAATTCGCAAAGAGGGCATTCGTCCCTCACGAGTCAGT
TGTTGCCAGAGGGACGCACTCTCACAACTGCTGATGAAGTCTAGAGGAGA
CAAGCCCAATGATTTTTTCCATCACCCGCACTCCCTCACCACAGTGCTAC
GGATGTAGTCTTTATGGCCGTGCCTTGGTGGTGCATCGAGCGCCGCAGCT
CCTCAAAATGCCATAGCTAATCGCGCCTCTTTCCCTCTCACACCCTTCCC
GCCTATAGCTCAGTCGGTCGTACACGACCATTCAAGACGAAGACCATGGC
CGCAGGAGGAATTTCCGGGGGAAATACTACCAGTATGCAAGCGTCATCCT
CTCCGCTCTTTCTGGGGATCGACCTTTCCACCCAGAGCATCACGGTGGTT
TTTGTTGAGGCAGGTGGTCGTGTGGTCCACCTCGACACGCTCAACTTTGA
CCGGGACTTGGCGCAGTTTGGCACGGTCGCGGGCATGCACGTGGGAAAAC
ACGGCAAGGTCACAAGTCCTGTCCAGATGTGGTTGGAGGGCCTTGACCGG
GTGCTGCGCCGCCAAGACCGTGCGACCATGGCCCGTGTCAAAGCCGTATC
GGGCTCGGCGCAGCAGCACGGGAGTGTGTTCTGGAACGCCAATGGCCTGC
ATGCGTTGCGTAATATGGCGCCTGCGGACAGTTTTTCCACGAACCTATTT
GATGGCTTTGCGTTAGAGGACTGCCCGATCTGGGCTGATTCATCGACGAC
GGCCGAATGTGAGGCAATCGAGAAAGCTGTAGGTGGCCCTGCAAAGATGG
CGGCCTTAACAGGCTCTCGGGCGTACTGTCGCTTCACAGGCCCGCAAATT
GCCAAAATTTCGCGCACGCAGCCATTGGTTTGGAAGCACACGGCGCGCGT
CTCGCTCGTGTCATCGTTTTTGACGTCGCTTTTGGTAGGACACCCGGCGC
CGGTGGACGCCTCCGATGCTTCAGGGATGAATTTGATGAACGTGCACACC
TTGGAGTGGTCAGAGGAGCTTCTGGAAGCCACGGCACCGGGTCTGGCTGC
ACGTTTGGGGACGATCACCGAGAGCTGGGCATCTGCAGGTCCGATTTCGC
CTTACTGTGCGGCGCGCTTTGGGTTTGCGGCCGATTGCCTGGTTATTCCC
GCCTCGGGCGACAAGTAAGTCCTCTAGTGTCCGTTCCTTGTCGGCTTTTC
ATCGAGTCGTGTGATGAGATTGCGAGGATTAGCTCGGGATGGGCTTGGCT
GGAAATATCGACGGAAAGGAAAGCTCAGTTCTCCATTTATCCCTTTCCCT
ATTGAAATACACACAGTAATTGCTCGGTGGTGGGAATGGGGTTGGGGTGT
GACGCAGCTTCGACCACGTTGATGGTAAGTCTAGGAACGTCGGACACAAT
AGTGGGATTGACTCGTAACCCCCATCCGGGGTTGGAGGGGCATGTGATGG
TCTCGCCTCGAGGGCCGGAGGAATGGTTCGCCATGTTGTGTTATAAGAAT
GCAGCGCTGGCACGGGAGGCGGTGCGGGACGCAGTGGCGGGGGGGAAGTG
GGAGAGGTTTTCGGAGTTGGTTGCAGAGGCCCCAGCGGGGAATGACGGGA
ATTTGGGACTGACGTTGGTGATGGAAGAAATTGTGCCGGTGTTGAGTGTG
AAGGGGACGTTTCGGGTGGACAGGCAGGGGGAAAGGGTGGGGGAGTTTGG
GAGTGCGGCTTATGAGGCGAGGGCGGTGGTTGAAGCGAGGTTTCTGTCCA
TGAAGGCACATGCGGCTCAGTTGGGTTTGTCGACGAACCCGACCCGGATT
GTGGCGACGGGTGGAGGGTCGACGAGCAAGGTGATGATGCAAGTGCTTGC
GGATGTATTTAATGCCCAGGTTTTGGTGGCGGACACCTCGGACGCGGCTG
CAGTGGGGGCAGCTTTGCGGGCGGAGCATGGATTGGCATGTCGGAAGCAG
GCAAGGTGGGTGGAGTATGAGGTGAGGCAACCGCAGGGGTTGAAGGTGGT
GGCAAGCCCGAATGCTGAGGCTGCTGCTGTATATTCGCCGGCGGTGTTGA
AACGATTCTTAGACTTTGAGAGGGGGCTGGCGATGCAGGGACAGGCGCAA
CAGCAGCAGGCGTAGAAGTGTAAGGAGAAGTATGTAGAGTACGTATGCAG
GTTCAAAGGAGAGGTGAGAAGGAAAACTTTAGACATTTTTTGAATATTTT
GTTTTACGGTATGTCAGGGAGTAAGTGGGGGGTATGTGACTCATGAAATG
AAGGGAAAAGAAGAGGAAATTAGATTGGATACAAACCATAGAAGCAAAGG
TACGTGGAAGGGATGAAAAAAGGGGGGGGCACCAATGTACGCTGTATAGA
AAGAAGGAGCAAACAAGAACAGGCTCACTCAGACAGTGTACATTTTTTGT
TTGCCGTAAATGTTGTCTCGTTAACGAAGCACCTCACTGTTGCTTGTCCC
CAATGTGTATCTGTTGTCACGAGGGTCTTCCAGATTGCATCCTCCCCCTG
CTGAAATTTCCATTTTCATCGACCAAGCCGAACTCCGGCCGAAAAAGAAG
AAGTTTAGATGACCGCAAATCAATGCCCACCATAGCAAGGAAACGCAGGC
ACTTCTCCATCAAAGGTCTTCCGTTGCATTATCATTATTATTATTATTAT
TATTATA

Coding sequence (CDS) from alignment at scaffold_17:237469..240325+

>mRNA_6843 ID=mRNA_6843|Name=jgi.p|Nanoce1779_2|544449|organism=Nannochloropsis oceanica|type=CDS|length=3336bp|location=Sequence derived from alignment at scaffold_17:237469..240325+ (Nannochloropsis oceanica)
ATGGCCGCAGGAGGAATTTCCGGGGGAAATACTACCAGTATGCAAGCGTC
ATCCTCTCCGCTCTTTCTGGGGATCGACCTTTCCACCCAGAGCATCACGG
TGGTTTTTGTTGAGGCAGGTGGTCGTGTGGTCCACCTCGACACGCTCAAC
TTTGACCGGGACTTGGCGCAGTTTGGCACGGTCGCGGGCATGCACGTGGG
AAAACACGGCAAGGTCACAAGTCCTGTCCAGATGTGGTTGGAGGGCCTTG
ACCGGGTGCTGCGCCGCCAAGACCGTGCGACCATGGCCCGTGTCAAAGCC
GTATCGGGCTCGGCGCAGCAGCACGGGAGTGTGTTCTGGAACGCCAATGG
CCTGCATGCGTTGCGTAATATGGCGCCTGCGGACAGTTTTTCCACGAACC
TATTTGATGGCTTTGCGTTAGAGGACTGCCCGATCTGGGCTGATTCATCG
ACGACGGCCGAATGTGAGGCAATCGAGAAAGCTGTAGGTGGCCCTGCAAA
GATGGCGGCCTTAACAGGCTCTCGGGCGTACTGTCGCTTCACAGGCCCGC
AAATTGCCAAAATTTCGCGCACGCAGCCATTGGTTTGGAAGCACACGGCG
CGCGTCTCGCTCGTGTCATCGTTTTTGACGTCGCTTTTGGTAGGACACCC
GGCGCCGGTGGACGCCTCCGATGCTTCAGGGATGAATTTGATGAACGTGC
ACACCTTGGAGTGGTCAGAGGAGCTTCTGGAAGCCACGGCACCGGGTCTG
GCTGCACGTTTGGGGACGATCACCGAGAGCTGGGCATCTGCAGGTCCGAT
TTCGCCTTACTGTGCGGCGCGCTTTGGGTTTGCGGCCGATTGCCTGGTTA
TTCCCGCCTCGGGCGACAATAATTGCTCGGTGGTGGGAATGGGGTTGGGG
TGTGACGCAGCTTCGACCACGTTGATGGTAAGTCTAGGAACGTCGGACAC
AATAGTGGGATTGACTCGTAACCCCCATCCGGGGTTGGAGGGGCATGTGA
TGGTCTCGCCTCGAGGGCCGGAGGAATGGTTCGCCATGTTGTGTTATAAG
AATGCAGCGCTGGCACGGGAGGCGGTGCGGGACGCAGTGGCGGGGGGGAA
GTGGGAGAGGTTTTCGGAGTTGGTTGCAGAGGCCCCAGCGGGGAATGACG
GGAATTTGGGACTGACGTTGGTGATGGAAGAAATTGTGCCGGTGTTGAGT
GTGAAGGGGACGTTTCGGGTGGACAGGCAGGGGGAAAGGGTGGGGGAGTT
TGGGAGTGCGGCTTATGAGGCGAGGGCGGTGGTTGAAGCGAGGTTTCTGT
CCATGAAGGCACATGCGGCTCAGTTGGGTTTGTCGACGAACCCGACCCGG
ATTGTGGCGACGGGTGGAGGGTCGACGAGCAAGGTGATGATGCAAGTGCT
TGCGGATGTATTTAATGCCCAGGTTTTGGTGGCGGACACCTCGGACGCGG
CTGCAGTGGGGGCAGCTTTGCGGGCGGAGCATGGATTGGCATGTCGGAAG
CAGGCAAGGTGGGTGGAGTATGAGGTGAGGCAACCGCAGGGGTTGAAGGT
GGTGGCAAGCCCGAATGCTGAGGCTGCTGCTGTATATTCGCCGGCGGTGT
TGAAACGATTCTTAGACTTTGAGAGGGGGCTGGCGATGCAGGGACAGGCG
CAACAGCAGCAGGCGTAGATGGCCGCAGGAGGAATTTCCGGGGGAAATAC
TACCAGTATGCAAGCGTCATCCTCTCCGCTCTTTCTGGGGATCGACCTTT
CCACCCAGAGCATCACGGTGGTTTTTGTTGAGGCAGGTGGTCGTGTGGTC
CACCTCGACACGCTCAACTTTGACCGGGACTTGGCGCAGTTTGGCACGGT
CGCGGGCATGCACGTGGGAAAACACGGCAAGGTCACAAGTCCTGTCCAGA
TGTGGTTGGAGGGCCTTGACCGGGTGCTGCGCCGCCAAGACCGTGCGACC
ATGGCCCGTGTCAAAGCCGTATCGGGCTCGGCGCAGCAGCACGGGAGTGT
GTTCTGGAACGCCAATGGCCTGCATGCGTTGCGTAATATGGCGCCTGCGG
ACAGTTTTTCCACGAACCTATTTGATGGCTTTGCGTTAGAGGACTGCCCG
ATCTGGGCTGATTCATCGACGACGGCCGAATGTGAGGCAATCGAGAAAGC
TGTAGGTGGCCCTGCAAAGATGGCGGCCTTAACAGGCTCTCGGGCGTACT
GTCGCTTCACAGGCCCGCAAATTGCCAAAATTTCGCGCACGCAGCCATTG
GTTTGGAAGCACACGGCGCGCGTCTCGCTCGTGTCATCGTTTTTGACGTC
GCTTTTGGTAGGACACCCGGCGCCGGTGGACGCCTCCGATGCTTCAGGGA
TGAATTTGATGAACGTGCACACCTTGGAGTGGTCAGAGGAGCTTCTGGAA
GCCACGGCACCGGGTCTGGCTGCACGTTTGGGGACGATCACCGAGAGCTG
GGCATCTGCAGGTCCGATTTCGCCTTACTGTGCGGCGCGCTTTGGGTTTG
CGGCCGATTGCCTGGTTATTCCCGCCTCGGGCGACAATAATTGCTCGGTG
GTGGGAATGGGGTTGGGGTGTGACGCAGCTTCGACCACGTTGATGGTAAG
TCTAGGAACGTCGGACACAATAGTGGGATTGACTCGTAACCCCCATCCGG
GGTTGGAGGGGCATGTGATGGTCTCGCCTCGAGGGCCGGAGGAATGGTTC
GCCATGTTGTGTTATAAGAATGCAGCGCTGGCACGGGAGGCGGTGCGGGA
CGCAGTGGCGGGGGGGAAGTGGGAGAGGTTTTCGGAGTTGGTTGCAGAGG
CCCCAGCGGGGAATGACGGGAATTTGGGACTGACGTTGGTGATGGAAGAA
ATTGTGCCGGTGTTGAGTGTGAAGGGGACGTTTCGGGTGGACAGGCAGGG
GGAAAGGGTGGGGGAGTTTGGGAGTGCGGCTTATGAGGCGAGGGCGGTGG
TTGAAGCGAGGTTTCTGTCCATGAAGGCACATGCGGCTCAGTTGGGTTTG
TCGACGAACCCGACCCGGATTGTGGCGACGGGTGGAGGGTCGACGAGCAA
GGTGATGATGCAAGTGCTTGCGGATGTATTTAATGCCCAGGTTTTGGTGG
CGGACACCTCGGACGCGGCTGCAGTGGGGGCAGCTTTGCGGGCGGAGCAT
GGATTGGCATGTCGGAAGCAGGCAAGGTGGGTGGAGTATGAGGTGAGGCA
ACCGCAGGGGTTGAAGGTGGTGGCAAGCCCGAATGCTGAGGCTGCTGCTG
TATATTCGCCGGCGGTGTTGAAACGATTCTTAGACTTTGAGAGGGGGCTG
GCGATGCAGGGACAGGCGCAACAGCAGCAGGCGTAG

Synonyms

Publications