jgi.p|Nanoce1779_2|631823, mRNA_6842 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|631823
Unique Name	mRNA_6842
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1630
Alignment location	scaffold_17:235608..237435 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	631909
Track	FilteredModels2
ProteinId	631823

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:235608..237435 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631823	gene_6842	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631823	mRNA_6842-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6842	CDS_6842	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:235608..237435+
coding sequence from alignment at scaffold_17:235608..237435+

mRNA sequence

>mRNA_6842 ID=mRNA_6842|Name=jgi.p|Nanoce1779_2|631823|organism=Nannochloropsis oceanica|type=mRNA|length=1630bp
ACAGGAAAAATATGCCGTCCCGTCCGCACGTCTACCAAGCCATCCTTTCG
CAGCCGGTGGATCCCACCCTTTTCGGGGTGCGTCGCCGTGGCCGCCACTC
TAATGGTAACGGCCCTCGAGCGTCCTCCTCGACGAGCAACCCTCAAGTTG
TCCTGGCTGCTTCGCAACTGGAAAGAATCCAAAAGCGTTCTTTGCTCCAA
ACCGATGCCGAGCCATATGAAGACAGGGACCGCAGCAACTACCATCATCA
AGGGCAAAAAACTACCGCAGAACGCCGGGCCAAAATGCTGGCGCTGGCTG
CTTTGGCCGAGGAGCAAAGCCACTCCGACAATGGGGATGAGGACGCGAAA
ACTGCTGTCATTGTGTGCTTGGCCCGTGCCTGTGAGAAGCGGAACGAAGG
GCTGGACATGTGCAAATATTTGAATGGGCTGGCGGCTCAGGCCGAGGCTT
TCATGTTGCGCGACCGACAGCTGGAGGACAAGGCTCAGGCGGTGGCGCAC
GAAAAGGTGTACCAAGCAGAGATGGATCAACGTATGGCAATGGCATGGCA
GATAAAGACAGATCGAAATCAGGTTGAACAAGCTCAACTGGTTACCACTA
AGCAGCAGGCACGCGAAGCCTTGGCAGCGCAGATTAGGGATAGGGAGCAC
CAAAATCTTTTGGCCGAAGAGGCGCGCAAGCAGGAGGGTATGGCTTTGCG
TGCCCAATTTCAAAAATATCAAGATGAGAAAGCCAAGGCCCTACGTGAGA
AACAGGCGCATGTGACCCAGCTCCGACAGGATGTACTCCGGGCGAATGCC
GAGGCTGTCCTCTCACGGCACGAAGCTGAAGAGCAAGAGAAGGCGAAGAT
GAACGAGCTGTTGTCGTACCAGCGACGTAAGGACGCCGAATTTCAACTTC
GCGAGCAGGAAGAAAGAGCCCGTGCCCATGCTAAGAAGGTATGGCAAGCC
CAGTTGTTTGCGCAGCAAGAACTGGCGCAGTCTAACGAGGCAAAAATGGA
GGAACGACGTGCCCGCCAGGCTGCCCAGCAAAAGGAGCGGGCCGCGCGCC
TACACGAAGAGCAAGAGGCCCTGCGCCGAAAACAAGAGAGTTTGGCGCTC
AAGGATGATCTTCTCCGTCAGGCTGCCGCAAAGAAAACGCAAGCCCTCGC
AGACGCGGAGGTAGAGCGCGAACAACTTGAAGCGTGCCAGCGACGAGCCG
CCGAGATGCTTGCACGGGAGAGAGCGGAGCAAGCGCACAAGACACGCTTG
AATAAGGCTAATTTGAATTATTTGAAGCAACAAGTCCAAGAGGCCGAGGC
GCGCCGACGGGCATCCCGCGCAAATAAGTTTTTGGAAGGTCATAGGCTAA
AGCAGGAAGCAGCAGCGGAGCTCACGAATTTGGATGCGTTCCGAAATCGA
TTGATTGCGGATCTTGAGGCCAAGGGCGTGGCGCCCAAGTATCTGACGCG
CATACGCCGGCAAAGGCTTGGACCGGCGGCGAGTTAGGGAAACGCTTTTT
TTAGTTGCGGGTATTGCGAGGTCGTGAGGGGGGCTTGGCCATGAAATTGG
GATTACCATACACATAAATCGAGAGAAGAAAAAGGACTGTTCATCAACAA
TGGTAGTACTCGATTCTTGGAAACTCCCTG

protein sequence of jgi.p|Nanoce1779_2|631823

>mRNA_6842-protein ID=mRNA_6842-protein|Name=jgi.p|Nanoce1779_2|631823|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MPSRPHVYQAILSQPVDPTLFGVRRRGRHSNGNGPRASSSTSNPQVVLAA
SQLERIQKRSLLQTDAEPYEDRDRSNYHHQGQKTTAERRAKMLALAALAE
EQSHSDNGDEDAKTAVIVCLARACEKRNEGLDMCKYLNGLAAQAEAFMLR
DRQLEDKAQAVAHEKVYQAEMDQRMAMAWQIKTDRNQVEQAQLVTTKQQA
REALAAQIRDREHQNLLAEEARKQEGMALRAQFQKYQDEKAKALREKQAH
VTQLRQDVLRANAEAVLSRHEAEEQEKAKMNELLSYQRRKDAEFQLREQE
ERARAHAKKVWQAQLFAQQELAQSNEAKMEERRARQAAQQKERAARLHEE
QEALRRKQESLALKDDLLRQAAAKKTQALADAEVEREQLEACQRRAAEML
ARERAEQAHKTRLNKANLNYLKQQVQEAEARRRASRANKFLEGHRLKQEA
AAELTNLDAFRNRLIADLEAKGVAPKYLTRIRRQRLGPAAS*

mRNA from alignment at scaffold_17:235608..237435+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6842 ID=mRNA_6842|Name=jgi.p|Nanoce1779_2|631823|organism=Nannochloropsis oceanica|type=mRNA|length=1828bp|location=Sequence derived from alignment at scaffold_17:235608..237435+ (Nannochloropsis oceanica)
ACAGGAAAAATATGCCGTCCCGTCCGCACGTCTACCAAGCCATCCTTTCG
CAGCCGGTGGATCCCACCCTTTTCGGGGTGCGTCGCCGTGGCCGCCACTC
TAATGGTAACGGCCCTCGAGCGTCCTCCTCGACGAGCAACCCTCAAGTTG
TCCTGGCTGCTTCGCAACTGGAAAGAATCCAAAAGCGTTCTTTGCTCCAA
ACCGATGCCGAGCCATATGAAGACAGGGACCGCAGCAACTACCATCATCA
AGGGCAAAAAACTACCGCAGAACGCCGGGCCAAAATGCTGGCGCTGGCTG
CTTTGGCCGAGGAGCAAAGCCACTCCGACAATGGGGATGAGGACGCGAAA
ACTGCTGTCATTGTGTGCTTGGCCCGTGCCTGTGAGAAGCGGAACGAAGG
GCTGGACATGTGCAAATATTTGAATGGGCTGGCGGCTCAGGCCGAGGTAG
GTGGGTGGTGGCCGGCAGAGGATTCAAAAGTGAATGGAGGCCAATAGGGA
TAAACGGATAGAAATGGCCAATCGTCATTATGTCACTACATTTACGATGA
TTCGCTTGATCTACTTTGTGGTATTATGCCTGATGGTTCATAAAATCAGC
CTCACGTATGTCCAAACAAAACGCTTTCACATACGCCCTCCAAGGCTTTC
ATGTTGCGCGACCGACAGCTGGAGGACAAGGCTCAGGCGGTGGCGCACGA
AAAGGTGTACCAAGCAGAGATGGATCAACGTATGGCAATGGCATGGCAGA
TAAAGACAGATCGAAATCAGGTTGAACAAGCTCAACTGGTTACCACTAAG
CAGCAGGCACGCGAAGCCTTGGCAGCGCAGATTAGGGATAGGGAGCACCA
AAATCTTTTGGCCGAAGAGGCGCGCAAGCAGGAGGGTATGGCTTTGCGTG
CCCAATTTCAAAAATATCAAGATGAGAAAGCCAAGGCCCTACGTGAGAAA
CAGGCGCATGTGACCCAGCTCCGACAGGATGTACTCCGGGCGAATGCCGA
GGCTGTCCTCTCACGGCACGAAGCTGAAGAGCAAGAGAAGGCGAAGATGA
ACGAGCTGTTGTCGTACCAGCGACGTAAGGACGCCGAATTTCAACTTCGC
GAGCAGGAAGAAAGAGCCCGTGCCCATGCTAAGAAGGTATGGCAAGCCCA
GTTGTTTGCGCAGCAAGAACTGGCGCAGTCTAACGAGGCAAAAATGGAGG
AACGACGTGCCCGCCAGGCTGCCCAGCAAAAGGAGCGGGCCGCGCGCCTA
CACGAAGAGCAAGAGGCCCTGCGCCGAAAACAAGAGAGTTTGGCGCTCAA
GGATGATCTTCTCCGTCAGGCTGCCGCAAAGAAAACGCAAGCCCTCGCAG
ACGCGGAGGTAGAGCGCGAACAACTTGAAGCGTGCCAGCGACGAGCCGCC
GAGATGCTTGCACGGGAGAGAGCGGAGCAAGCGCACAAGACACGCTTGAA
TAAGGCTAATTTGAATTATTTGAAGCAACAAGTCCAAGAGGCCGAGGCGC
GCCGACGGGCATCCCGCGCAAATAAGTTTTTGGAAGGTCATAGGCTAAAG
CAGGAAGCAGCAGCGGAGCTCACGAATTTGGATGCGTTCCGAAATCGATT
GATTGCGGATCTTGAGGCCAAGGGCGTGGCGCCCAAGTATCTGACGCGCA
TACGCCGGCAAAGGCTTGGACCGGCGGCGAGTTAGGGAAACGCTTTTTTT
AGTTGCGGGTATTGCGAGGTCGTGAGGGGGGCTTGGCCATGAAATTGGGA
TTACCATACACATAAATCGAGAGAAGAAAAAGGACTGTTCATCAACAATG
GTAGTACTCGATTCTTGGAAACTCCCTG

Coding sequence (CDS) from alignment at scaffold_17:235608..237435+

>mRNA_6842 ID=mRNA_6842|Name=jgi.p|Nanoce1779_2|631823|organism=Nannochloropsis oceanica|type=CDS|length=2952bp|location=Sequence derived from alignment at scaffold_17:235608..237435+ (Nannochloropsis oceanica)
ATGCCGTCCCGTCCGCACGTCTACCAAGCCATCCTTTCGCAGCCGGTGGA
TCCCACCCTTTTCGGGGTGCGTCGCCGTGGCCGCCACTCTAATGGTAACG
GCCCTCGAGCGTCCTCCTCGACGAGCAACCCTCAAGTTGTCCTGGCTGCT
TCGCAACTGGAAAGAATCCAAAAGCGTTCTTTGCTCCAAACCGATGCCGA
GCCATATGAAGACAGGGACCGCAGCAACTACCATCATCAAGGGCAAAAAA
CTACCGCAGAACGCCGGGCCAAAATGCTGGCGCTGGCTGCTTTGGCCGAG
GAGCAAAGCCACTCCGACAATGGGGATGAGGACGCGAAAACTGCTGTCAT
TGTGTGCTTGGCCCGTGCCTGTGAGAAGCGGAACGAAGGGCTGGACATGT
GCAAATATTTGAATGGGCTGGCGGCTCAGGCCGAGGCTTTCATGTTGCGC
GACCGACAGCTGGAGGACAAGGCTCAGGCGGTGGCGCACGAAAAGGTGTA
CCAAGCAGAGATGGATCAACGTATGGCAATGGCATGGCAGATAAAGACAG
ATCGAAATCAGGTTGAACAAGCTCAACTGGTTACCACTAAGCAGCAGGCA
CGCGAAGCCTTGGCAGCGCAGATTAGGGATAGGGAGCACCAAAATCTTTT
GGCCGAAGAGGCGCGCAAGCAGGAGGGTATGGCTTTGCGTGCCCAATTTC
AAAAATATCAAGATGAGAAAGCCAAGGCCCTACGTGAGAAACAGGCGCAT
GTGACCCAGCTCCGACAGGATGTACTCCGGGCGAATGCCGAGGCTGTCCT
CTCACGGCACGAAGCTGAAGAGCAAGAGAAGGCGAAGATGAACGAGCTGT
TGTCGTACCAGCGACGTAAGGACGCCGAATTTCAACTTCGCGAGCAGGAA
GAAAGAGCCCGTGCCCATGCTAAGAAGGTATGGCAAGCCCAGTTGTTTGC
GCAGCAAGAACTGGCGCAGTCTAACGAGGCAAAAATGGAGGAACGACGTG
CCCGCCAGGCTGCCCAGCAAAAGGAGCGGGCCGCGCGCCTACACGAAGAG
CAAGAGGCCCTGCGCCGAAAACAAGAGAGTTTGGCGCTCAAGGATGATCT
TCTCCGTCAGGCTGCCGCAAAGAAAACGCAAGCCCTCGCAGACGCGGAGG
TAGAGCGCGAACAACTTGAAGCGTGCCAGCGACGAGCCGCCGAGATGCTT
GCACGGGAGAGAGCGGAGCAAGCGCACAAGACACGCTTGAATAAGGCTAA
TTTGAATTATTTGAAGCAACAAGTCCAAGAGGCCGAGGCGCGCCGACGGG
CATCCCGCGCAAATAAGTTTTTGGAAGGTCATAGGCTAAAGCAGGAAGCA
GCAGCGGAGCTCACGAATTTGGATGCGTTCCGAAATCGATTGATTGCGGA
TCTTGAGGCCAAGGGCGTGGCGCCCAAGTATCTGACGCGCATACGCCGGC
AAAGGCTTGGACCGGCGGCGAGTTAGATGCCGTCCCGTCCGCACGTCTAC
CAAGCCATCCTTTCGCAGCCGGTGGATCCCACCCTTTTCGGGGTGCGTCG
CCGTGGCCGCCACTCTAATGGTAACGGCCCTCGAGCGTCCTCCTCGACGA
GCAACCCTCAAGTTGTCCTGGCTGCTTCGCAACTGGAAAGAATCCAAAAG
CGTTCTTTGCTCCAAACCGATGCCGAGCCATATGAAGACAGGGACCGCAG
CAACTACCATCATCAAGGGCAAAAAACTACCGCAGAACGCCGGGCCAAAA
TGCTGGCGCTGGCTGCTTTGGCCGAGGAGCAAAGCCACTCCGACAATGGG
GATGAGGACGCGAAAACTGCTGTCATTGTGTGCTTGGCCCGTGCCTGTGA
GAAGCGGAACGAAGGGCTGGACATGTGCAAATATTTGAATGGGCTGGCGG
CTCAGGCCGAGGCTTTCATGTTGCGCGACCGACAGCTGGAGGACAAGGCT
CAGGCGGTGGCGCACGAAAAGGTGTACCAAGCAGAGATGGATCAACGTAT
GGCAATGGCATGGCAGATAAAGACAGATCGAAATCAGGTTGAACAAGCTC
AACTGGTTACCACTAAGCAGCAGGCACGCGAAGCCTTGGCAGCGCAGATT
AGGGATAGGGAGCACCAAAATCTTTTGGCCGAAGAGGCGCGCAAGCAGGA
GGGTATGGCTTTGCGTGCCCAATTTCAAAAATATCAAGATGAGAAAGCCA
AGGCCCTACGTGAGAAACAGGCGCATGTGACCCAGCTCCGACAGGATGTA
CTCCGGGCGAATGCCGAGGCTGTCCTCTCACGGCACGAAGCTGAAGAGCA
AGAGAAGGCGAAGATGAACGAGCTGTTGTCGTACCAGCGACGTAAGGACG
CCGAATTTCAACTTCGCGAGCAGGAAGAAAGAGCCCGTGCCCATGCTAAG
AAGGTATGGCAAGCCCAGTTGTTTGCGCAGCAAGAACTGGCGCAGTCTAA
CGAGGCAAAAATGGAGGAACGACGTGCCCGCCAGGCTGCCCAGCAAAAGG
AGCGGGCCGCGCGCCTACACGAAGAGCAAGAGGCCCTGCGCCGAAAACAA
GAGAGTTTGGCGCTCAAGGATGATCTTCTCCGTCAGGCTGCCGCAAAGAA
AACGCAAGCCCTCGCAGACGCGGAGGTAGAGCGCGAACAACTTGAAGCGT
GCCAGCGACGAGCCGCCGAGATGCTTGCACGGGAGAGAGCGGAGCAAGCG
CACAAGACACGCTTGAATAAGGCTAATTTGAATTATTTGAAGCAACAAGT
CCAAGAGGCCGAGGCGCGCCGACGGGCATCCCGCGCAAATAAGTTTTTGG
AAGGTCATAGGCTAAAGCAGGAAGCAGCAGCGGAGCTCACGAATTTGGAT
GCGTTCCGAAATCGATTGATTGCGGATCTTGAGGCCAAGGGCGTGGCGCC
CAAGTATCTGACGCGCATACGCCGGCAAAGGCTTGGACCGGCGGCGAGTT
AG

Synonyms

Publications