jgi.p|Nanoce1779_2|530874, mRNA_6841 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|530874
Unique NamemRNA_6841
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length513
Alignment locationscaffold_17:234678..235190 -

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Properties
Property NameValue
TranscriptId530960
TrackFilteredModels2
ProteinId530874
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:234678..235190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530874gene_6841Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6841CDS_6841Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530874mRNA_6841-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6841 ID=mRNA_6841|Name=jgi.p|Nanoce1779_2|530874|organism=Nannochloropsis oceanica|type=mRNA|length=513bp
ATGTTCTGCAAGGTCCTTCACGTCATGCGGCACGGAGTTGCCGTTCACAA
CCAGCCCAATGCTCACCGACTGCCTCCGGCCTCCCTGTTCGACCCCAGTC
TAACCATGCAAGGCGTCGCTCAAGCTAATGCAGCCAAGGCTAAAATCCAG
GCATTACAACCCCAGCTCGTGCTTACTTCGCCCTTGACCCGGGCCTTGCA
AACAGCTATCACTGTCATGGCCTCAATTGACGACGGCAGAGAAAACAACA
AACCCCCTACAACAACTTCCCCTCCACCGGTCATTTTGGCTCTGGAAATT
GTCCGGGAGGCCTACGGTGTCTTGCTCTCCGACAAACGACGAAGTGTCAC
GGAGCTCGGTGCAGCATTTAGCCCGGCGGTAGACCTATCGATGTTGTCGG
AGGAGGATCAATTTTGGGAAGCGGGGGAACGAGAGACTTTGGAGGCAGTG
CATAGTCGTGCACGCACTCTCTTGCTCGAGCTCTTGGCACGGCACGAGCG
GCATACTCTCCTC
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protein sequence of jgi.p|Nanoce1779_2|530874

>mRNA_6841-protein ID=mRNA_6841-protein|Name=jgi.p|Nanoce1779_2|530874|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MFCKVLHVMRHGVAVHNQPNAHRLPPASLFDPSLTMQGVAQANAAKAKIQ
ALQPQLVLTSPLTRALQTAITVMASIDDGRENNKPPTTTSPPPVILALEI
VREAYGVLLSDKRRSVTELGAAFSPAVDLSMLSEEDQFWEAGERETLEAV
HSRARTLLLELLARHERHTLL
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mRNA from alignment at scaffold_17:234678..235190-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6841 ID=mRNA_6841|Name=jgi.p|Nanoce1779_2|530874|organism=Nannochloropsis oceanica|type=mRNA|length=513bp|location=Sequence derived from alignment at scaffold_17:234678..235190- (Nannochloropsis oceanica)
ATGTTCTGCAAGGTCCTTCACGTCATGCGGCACGGAGTTGCCGTTCACAA
CCAGCCCAATGCTCACCGACTGCCTCCGGCCTCCCTGTTCGACCCCAGTC
TAACCATGCAAGGCGTCGCTCAAGCTAATGCAGCCAAGGCTAAAATCCAG
GCATTACAACCCCAGCTCGTGCTTACTTCGCCCTTGACCCGGGCCTTGCA
AACAGCTATCACTGTCATGGCCTCAATTGACGACGGCAGAGAAAACAACA
AACCCCCTACAACAACTTCCCCTCCACCGGTCATTTTGGCTCTGGAAATT
GTCCGGGAGGCCTACGGTGTCTTGCTCTCCGACAAACGACGAAGTGTCAC
GGAGCTCGGTGCAGCATTTAGCCCGGCGGTAGACCTATCGATGTTGTCGG
AGGAGGATCAATTTTGGGAAGCGGGGGAACGAGAGACTTTGGAGGCAGTG
CATAGTCGTGCACGCACTCTCTTGCTCGAGCTCTTGGCACGGCACGAGCG
GCATACTCTCCTC
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Coding sequence (CDS) from alignment at scaffold_17:234678..235190-

>mRNA_6841 ID=mRNA_6841|Name=jgi.p|Nanoce1779_2|530874|organism=Nannochloropsis oceanica|type=CDS|length=513bp|location=Sequence derived from alignment at scaffold_17:234678..235190- (Nannochloropsis oceanica)
ATGTTCTGCAAGGTCCTTCACGTCATGCGGCACGGAGTTGCCGTTCACAA
CCAGCCCAATGCTCACCGACTGCCTCCGGCCTCCCTGTTCGACCCCAGTC
TAACCATGCAAGGCGTCGCTCAAGCTAATGCAGCCAAGGCTAAAATCCAG
GCATTACAACCCCAGCTCGTGCTTACTTCGCCCTTGACCCGGGCCTTGCA
AACAGCTATCACTGTCATGGCCTCAATTGACGACGGCAGAGAAAACAACA
AACCCCCTACAACAACTTCCCCTCCACCGGTCATTTTGGCTCTGGAAATT
GTCCGGGAGGCCTACGGTGTCTTGCTCTCCGACAAACGACGAAGTGTCAC
GGAGCTCGGTGCAGCATTTAGCCCGGCGGTAGACCTATCGATGTTGTCGG
AGGAGGATCAATTTTGGGAAGCGGGGGAACGAGAGACTTTGGAGGCAGTG
CATAGTCGTGCACGCACTCTCTTGCTCGAGCTCTTGGCACGGCACGAGCG
GCATACTCTCCTC
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Synonyms
Publications