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Properties
| Property Name | Value |
|---|
| TranscriptId | 596597 |
| Track | FilteredModels2 |
| ProteinId | 596511 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:231205..233418 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6840 ID=mRNA_6840|Name=jgi.p|Nanoce1779_2|596511|organism=Nannochloropsis oceanica|type=mRNA|length=1893bp
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCATTTGGACGATTGCC
GGCATCTCTACCACCAGCAACTCAGCCACCACTCACACCAAGACCAGCAA
AGCAGACGACACAGCTTCGAAGAGCCCAAGGAAGGCAAAAGTGAAGAAGC
AGGAGGGAAAACGCCCAAAGTCGGCATGGCCTCCGCAGAGCTCGACTACG
GCAGCAGCCCCATCAGATGCAGCAATAGCAGCGACGGCAGCGACATTGAA
AGTGGTATTAGCCCCGTGTCTCCAGGCCAAGAGACGGCACATCGCATCAT
CAGACTTCTCCTCGATTGGGACCCCAATCAACGCCAACCCTTACCGGAGC
CAGGAGTCTTTGGTGCTTTAGTCGGAGGTATGACTGATCTAGAGCCGCTT
TTCGAAGAGCTCGAGGGCCTGCTGATTTCCGAACCGACGGTGCTGGAGGC
AAGGACACCGACGAGGATTTTTGGGGACATTCACGGGCAGTTGGGAGATT
TGTTGCGGTTGTTCAAGGCGTATGGGAGGCCGGACCGATTTGGAGACATC
AACCTGGTGGATTACATCTTCAACGGAGACTTTGTCGATCGCGGCCCCTG
TTCCTGCGACGTGGTTCTCCTCCTCTTCTCTCTCAAGGTCGCCTATCCTC
GGCACGTTTTCCTTATTCGTGGTAACCATGAATGTCGAACGGTGAACATT
CACTATGGGTTTAAGACCGAATGCCTTCGACGAGTAGGAGAAGAAGCCGG
CGCACAGCTCTGGGAGATGTGCAACAAATTGTTTGACCTCTTGCCGCTCG
CTGCACGAGTGGAGGGAAGGATTTTGGTCCTTCATGGAGGCTTAGGCGCG
AGTCTAAACTTCGTCGAACAGCTGCAGGCATTGCAGAGGCCAATTGTCAA
TGGAGAGGCGAGAGAGGAGCCGCTGGGGCAGCTGTTGAGGGACTGTCTGT
GGAGTGATCCGACCCTGTCAGATTCTGTCATGGGCACGCATGCGTCCCCC
AGAGGGACGGGCATTGCTTTGTTTGGCCCCGATCGAGTGGAGGCGTTTTG
TGAGGCGAATGATTTGGATGTGGTGGTCCGCTCCCACCAAGTCGTCAACA
ATGGGTACGAGTTCTTCGCCAACCAGCGGCTCATCACCGTCTTCTCCGCC
ACGGACTACTGCGGAAAGCACAAGAACGACGGGGCCATATTGGAGATAGA
CCGCGATTTGGTCGTTACCCCCAAGCTGGTCAAGGACGATAAAACTTCGC
GATGGGCCATGCCGCGTGATTCCTCCCCTCCGCGAGCAAGGCCTTCGCCA
CCTCTGCCTGCAGCGCGTGCAGTGTCTCCTTTCACACCTGCACACCCTCG
ACCTCAGCCTCAACCATAACCTCCCCTCCTTGGGCACGCCCTATCGTAGT
AGTACTAGAGGCAGGGGAAGAAGGAAGAAAGGGAGGGAGGGAGGATTGCA
ATATGGCGGGAGGCACCGATCGTATCGCGAATAGACTTTCTTTTCACGTT
CTTTTGATCGATTGGAACCCTCATTTTGCTGCAGCCCTATATTTGCCTGA
GTGAGGGAGAAATGGGGACGGTGAGGATGAAATGTGGTCATCCTAGTGGC
CGATCGAGCTTGTCTGTATAATGTTCAGTCGAGGAGGGAGGGAGGGAAAG
GAGGAGTGAGGGGGGGAAGAAGGAAATGAGAGTTCATATCGGCTAAAGCC
ACATAGGAAGTGCGCTTTAGATGTCGTGAGTAATATCACGTGAAATGAAC
AAGACAGTATGATTGCAAAGAGAGGGTCAACAATAGCATGCAAATCTTTC
TACTTGTAGGTGAAATGACAGATGAAATAGCGACCCTACAAATGGGAAGA
AAGTACAAATGGATGAAAGAAACGTAATTCAATACCATCAAAA back to topprotein sequence of jgi.p|Nanoce1779_2|596511 >mRNA_6840-protein ID=mRNA_6840-protein|Name=jgi.p|Nanoce1779_2|596511|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MASAELDYGSSPIRCSNSSDGSDIESGISPVSPGQETAHRIIRLLLDWDP
NQRQPLPEPGVFGALVGGMTDLEPLFEELEGLLISEPTVLEARTPTRIFG
DIHGQLGDLLRLFKAYGRPDRFGDINLVDYIFNGDFVDRGPCSCDVVLLL
FSLKVAYPRHVFLIRGNHECRTVNIHYGFKTECLRRVGEEAGAQLWEMCN
KLFDLLPLAARVEGRILVLHGGLGASLNFVEQLQALQRPIVNGEAREEPL
GQLLRDCLWSDPTLSDSVMGTHASPRGTGIALFGPDRVEAFCEANDLDVV
VRSHQVVNNGYEFFANQRLITVFSATDYCGKHKNDGAILEIDRDLVVTPK
LVKDDKTSRWAMPRDSSPPRARPSPPLPAARAVSPFTPAHPRPQPQP* back to topmRNA from alignment at scaffold_17:231205..233418- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6840 ID=mRNA_6840|Name=jgi.p|Nanoce1779_2|596511|organism=Nannochloropsis oceanica|type=mRNA|length=2214bp|location=Sequence derived from alignment at scaffold_17:231205..233418- (Nannochloropsis oceanica)
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCATTTGGACGATTGCC
GGCATCTCTACCACCAGCAACTCAGCCACCACTCACACCAAGACCAGCAA
AGCAGACGACACAGCTTCGAAGAGCCCAAGGAAGGCAAAAGTGAAGAAGC
AGGAGGGAAAACGCCCAAAGTCGGCATGGCCTCCGCAGAGCTCGACTACG
GCAGCAGCCCCATCAGATGCAGCAATAGCAGCGACGGCAGCGACATTGAA
AGTGGTATTAGCCCCGTGTCTCCAGGCCAAGAGACGGCACATCGCATCAT
CAGACTTCTCCTCGATTGGGACCCCAATCAACGCCAACCCTTACCGGAGC
CAGGAGTCTTTGGTGCTTTAGTCGGAGGTATGACTGATCTAGAGCCGCTT
TTCGAAGAGCTCGAGGGCCTGCTGATTTCCGAACCGACGGTGCTGGAGGC
AAGGACACCGACGAGGATTTTTGGGGACATTCACGGGCAGTTGGGAGATT
TGTTGCGGTTGTTCAAGGCGTATGGGAGGCCGGACCGATTTGGAGGTAGG
AAAGGGAGGGGATAGAGGGAGGTAGGGTGAGATAAAATAAGGGCTGCTAT
ATTCGGTCGTGGACTGTCCTGACTCCGATTCATCTCCCTCCTTTCCTCCT
TTCCCTTTCCCTCCCTCTCCCTTCAGACATCAACCTGGTGGATTACATCT
TCAACGGAGACTTTGTCGATCGCGGCCCCTGTTCCTGCGACGTGGTTCTC
CTCCTCTTCTCTCTCAAGGTCGCCTATCCTCGGCACGTTTTCCTTATTCG
TGGTAACCATGAATGTCGAACGGTGAACATTCACTATGGGTTTAAGACCG
AATGCCTTCGACGAGTAGGAGAAGAAGCCGGCGCACAGCTCTGGGAGATG
TGCAACAAATTGTTTGACCTCTTGCCGCTCGCTGCACGAGTGGAGGGAAG
GATTTTGGTCCTTCATGGAGGCTTAGGCGCGAGTCTAAACTTCGTCGAAC
AGCTGCAGGCATTGCAGAGGCCAATTGTCAATGGAGAGGCGAGAGAGGAG
CCGCTGGGGCAGCTGTTGAGGGACTGTCTGTGGAGTGATCCGACCCTGTC
AGATTCTGTCATGGGCACGCATGCGTCCCCCAGAGGGACGGGCATTGCTT
TGTTTGGCCCCGATCGAGTGGAGGCGTTTTGTGAGGCGAATGATTTGGAT
GTGGTGGTAAGGAAAAGCGGAGGGAGGAGTTTAAGGGAGTAGGGAGGAAG
GGAGAGGAAGGGAGAAGGTGAGAGGGGAAAATGTTAGCATCATGTGGTCC
TCGAGAGCCTCCTGAGCATTTCATCACCATTGACTCCACCGTTTAACCTA
ACCCGCCCTACCTACCCGCCCCTCCCCCCTTTTAACCCCTCCGCAGGTCC
GCTCCCACCAAGTCGTCAACAATGGGTACGAGTTCTTCGCCAACCAGCGG
CTCATCACCGTCTTCTCCGCCACGGACTACTGCGGAAAGCACAAGAACGA
CGGGGCCATATTGGAGATAGACCGCGATTTGGTCGTTACCCCCAAGCTGG
TCAAGGACGATAAAACTTCGCGATGGGCCATGCCGCGTGATTCCTCCCCT
CCGCGAGCAAGGCCTTCGCCACCTCTGCCTGCAGCGCGTGCAGTGTCTCC
TTTCACACCTGCACACCCTCGACCTCAGCCTCAACCATAACCTCCCCTCC
TTGGGCACGCCCTATCGTAGTAGTACTAGAGGCAGGGGAAGAAGGAAGAA
AGGGAGGGAGGGAGGATTGCAATATGGCGGGAGGCACCGATCGTATCGCG
AATAGACTTTCTTTTCACGTTCTTTTGATCGATTGGAACCCTCATTTTGC
TGCAGCCCTATATTTGCCTGAGTGAGGGAGAAATGGGGACGGTGAGGATG
AAATGTGGTCATCCTAGTGGCCGATCGAGCTTGTCTGTATAATGTTCAGT
CGAGGAGGGAGGGAGGGAAAGGAGGAGTGAGGGGGGGAAGAAGGAAATGA
GAGTTCATATCGGCTAAAGCCACATAGGAAGTGCGCTTTAGATGTCGTGA
GTAATATCACGTGAAATGAACAAGACAGTATGATTGCAAAGAGAGGGTCA
ACAATAGCATGCAAATCTTTCTACTTGTAGGTGAAATGACAGATGAAATA
GCGACCCTACAAATGGGAAGAAAGTACAAATGGATGAAAGAAACGTAATT
CAATACCATCAAAA back to topCoding sequence (CDS) from alignment at scaffold_17:231205..233418- >mRNA_6840 ID=mRNA_6840|Name=jgi.p|Nanoce1779_2|596511|organism=Nannochloropsis oceanica|type=CDS|length=3582bp|location=Sequence derived from alignment at scaffold_17:231205..233418- (Nannochloropsis oceanica)
GTCCGCTCCCACCAAGTCGTCAACAATGGGTACGAGTTCTTCGCCAACCA
GCGGCTCATCACCGTCTTCTCCGCCACGGACTACTGCGGAAAGCACAAGA
ACGACGGGGCCATATTGGAGATAGACCGCGATTTGGTCGTTACCCCCAAG
CTGGTCAAGGACGATAAAACTTCGCGATGGGCCATGCCGCGTGATTCCTC
CCCTCCGCGAGCAAGGCCTTCGCCACCTCTGCCTGCAGCGCGTGCAGTGT
CTCCTTTCACACCTGCACACCCTCGACCTCAGCCTCAACCATAAACATCA
ACCTGGTGGATTACATCTTCAACGGAGACTTTGTCGATCGCGGCCCCTGT
TCCTGCGACGTGGTTCTCCTCCTCTTCTCTCTCAAGGTCGCCTATCCTCG
GCACGTTTTCCTTATTCGTGGTAACCATGAATGTCGAACGGTGAACATTC
ACTATGGGTTTAAGACCGAATGCCTTCGACGAGTAGGAGAAGAAGCCGGC
GCACAGCTCTGGGAGATGTGCAACAAATTGTTTGACCTCTTGCCGCTCGC
TGCACGAGTGGAGGGAAGGATTTTGGTCCTTCATGGAGGCTTAGGCGCGA
GTCTAAACTTCGTCGAACAGCTGCAGGCATTGCAGAGGCCAATTGTCAAT
GGAGAGGCGAGAGAGGAGCCGCTGGGGCAGCTGTTGAGGGACTGTCTGTG
GAGTGATCCGACCCTGTCAGATTCTGTCATGGGCACGCATGCGTCCCCCA
GAGGGACGGGCATTGCTTTGTTTGGCCCCGATCGAGTGGAGGCGTTTTGT
GAGGCGAATGATTTGGATGTGGTGATGGCCTCCGCAGAGCTCGACTACGG
CAGCAGCCCCATCAGATGCAGCAATAGCAGCGACGGCAGCGACATTGAAA
GTGGTATTAGCCCCGTGTCTCCAGGCCAAGAGACGGCACATCGCATCATC
AGACTTCTCCTCGATTGGGACCCCAATCAACGCCAACCCTTACCGGAGCC
AGGAGTCTTTGGTGCTTTAGTCGGAGGTATGACTGATCTAGAGCCGCTTT
TCGAAGAGCTCGAGGGCCTGCTGATTTCCGAACCGACGGTGCTGGAGGCA
AGGACACCGACGAGGATTTTTGGGGACATTCACGGGCAGTTGGGAGATTT
GTTGCGGTTGTTCAAGGCGTATGGGAGGCCGGACCGATTTGGAGGTCCGC
TCCCACCAAGTCGTCAACAATGGGTACGAGTTCTTCGCCAACCAGCGGCT
CATCACCGTCTTCTCCGCCACGGACTACTGCGGAAAGCACAAGAACGACG
GGGCCATATTGGAGATAGACCGCGATTTGGTCGTTACCCCCAAGCTGGTC
AAGGACGATAAAACTTCGCGATGGGCCATGCCGCGTGATTCCTCCCCTCC
GCGAGCAAGGCCTTCGCCACCTCTGCCTGCAGCGCGTGCAGTGTCTCCTT
TCACACCTGCACACCCTCGACCTCAGCCTCAACCATAAACATCAACCTGG
TGGATTACATCTTCAACGGAGACTTTGTCGATCGCGGCCCCTGTTCCTGC
GACGTGGTTCTCCTCCTCTTCTCTCTCAAGGTCGCCTATCCTCGGCACGT
TTTCCTTATTCGTGGTAACCATGAATGTCGAACGGTGAACATTCACTATG
GGTTTAAGACCGAATGCCTTCGACGAGTAGGAGAAGAAGCCGGCGCACAG
CTCTGGGAGATGTGCAACAAATTGTTTGACCTCTTGCCGCTCGCTGCACG
AGTGGAGGGAAGGATTTTGGTCCTTCATGGAGGCTTAGGCGCGAGTCTAA
ACTTCGTCGAACAGCTGCAGGCATTGCAGAGGCCAATTGTCAATGGAGAG
GCGAGAGAGGAGCCGCTGGGGCAGCTGTTGAGGGACTGTCTGTGGAGTGA
TCCGACCCTGTCAGATTCTGTCATGGGCACGCATGCGTCCCCCAGAGGGA
CGGGCATTGCTTTGTTTGGCCCCGATCGAGTGGAGGCGTTTTGTGAGGCG
AATGATTTGGATGTGGTGATGGCCTCCGCAGAGCTCGACTACGGCAGCAG
CCCCATCAGATGCAGCAATAGCAGCGACGGCAGCGACATTGAAAGTGGTA
TTAGCCCCGTGTCTCCAGGCCAAGAGACGGCACATCGCATCATCAGACTT
CTCCTCGATTGGGACCCCAATCAACGCCAACCCTTACCGGAGCCAGGAGT
CTTTGGTGCTTTAGTCGGAGGTATGACTGATCTAGAGCCGCTTTTCGAAG
AGCTCGAGGGCCTGCTGATTTCCGAACCGACGGTGCTGGAGGCAAGGACA
CCGACGAGGATTTTTGGGGACATTCACGGGCAGTTGGGAGATTTGTTGCG
GTTGTTCAAGGCGTATGGGAGGCCGGACCGATTTGGAGGTCCGCTCCCAC
CAAGTCGTCAACAATGGGTACGAGTTCTTCGCCAACCAGCGGCTCATCAC
CGTCTTCTCCGCCACGGACTACTGCGGAAAGCACAAGAACGACGGGGCCA
TATTGGAGATAGACCGCGATTTGGTCGTTACCCCCAAGCTGGTCAAGGAC
GATAAAACTTCGCGATGGGCCATGCCGCGTGATTCCTCCCCTCCGCGAGC
AAGGCCTTCGCCACCTCTGCCTGCAGCGCGTGCAGTGTCTCCTTTCACAC
CTGCACACCCTCGACCTCAGCCTCAACCATAAACATCAACCTGGTGGATT
ACATCTTCAACGGAGACTTTGTCGATCGCGGCCCCTGTTCCTGCGACGTG
GTTCTCCTCCTCTTCTCTCTCAAGGTCGCCTATCCTCGGCACGTTTTCCT
TATTCGTGGTAACCATGAATGTCGAACGGTGAACATTCACTATGGGTTTA
AGACCGAATGCCTTCGACGAGTAGGAGAAGAAGCCGGCGCACAGCTCTGG
GAGATGTGCAACAAATTGTTTGACCTCTTGCCGCTCGCTGCACGAGTGGA
GGGAAGGATTTTGGTCCTTCATGGAGGCTTAGGCGCGAGTCTAAACTTCG
TCGAACAGCTGCAGGCATTGCAGAGGCCAATTGTCAATGGAGAGGCGAGA
GAGGAGCCGCTGGGGCAGCTGTTGAGGGACTGTCTGTGGAGTGATCCGAC
CCTGTCAGATTCTGTCATGGGCACGCATGCGTCCCCCAGAGGGACGGGCA
TTGCTTTGTTTGGCCCCGATCGAGTGGAGGCGTTTTGTGAGGCGAATGAT
TTGGATGTGGTGATGGCCTCCGCAGAGCTCGACTACGGCAGCAGCCCCAT
CAGATGCAGCAATAGCAGCGACGGCAGCGACATTGAAAGTGGTATTAGCC
CCGTGTCTCCAGGCCAAGAGACGGCACATCGCATCATCAGACTTCTCCTC
GATTGGGACCCCAATCAACGCCAACCCTTACCGGAGCCAGGAGTCTTTGG
TGCTTTAGTCGGAGGTATGACTGATCTAGAGCCGCTTTTCGAAGAGCTCG
AGGGCCTGCTGATTTCCGAACCGACGGTGCTGGAGGCAAGGACACCGACG
AGGATTTTTGGGGACATTCACGGGCAGTTGGGAGATTTGTTGCGGTTGTT
CAAGGCGTATGGGAGGCCGGACCGATTTGGAG back to top
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