jgi.p|Nanoce1779_2|596507, mRNA_6839 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596507
Unique NamemRNA_6839
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1265
Alignment locationscaffold_17:229936..231200 +

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Properties
Property NameValue
TranscriptId596593
TrackFilteredModels2
ProteinId596507
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:229936..231200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596507gene_6839Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596507mRNA_6839-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6839CDS_6839Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6839 ID=mRNA_6839|Name=jgi.p|Nanoce1779_2|596507|organism=Nannochloropsis oceanica|type=mRNA|length=1265bp
GCGCTTCTTGGCCCACAGGCTAGTTTCGCTCTCCTTTCCTTCTTTGCCCC
TGTGATTTGTGCGGAAATGCGTCAGTGAAAGAATGCCTGCGAGCCACGAG
GAGGACAAGGCACATGGCTTCCTGTCCCTGCCCTACACGATGTCAGGAAG
GACTGTGTTTTGAAATACAATTCGTGAAGAGGACAAAGCCAATAGAAGCA
CGTCATCATGTTCGCCGTTGGGCTGCTGGCTGCTGGTACGTGGGCGGAGC
CTCTGTGACCTTTCTACCACGCCCTACGCAAAACCCCGCTGCCCTCAGCC
TACCACTCAGCATATCGACCATCTCCCCACAGACAATATAATGGGTGGTC
TCTTTAGCAGGCACCACGGACACGGGCGCAAGCCCAAAGTCCTAGTCACC
GACCATGACCGCGCGGTGCTTGACCTCAAAATTGCGAAGGACAAACTGAA
GCGGTACCAAATCAAGATGCGAAGCGAGTCAATACGCTTGACAGAGCAAG
CCAAAGAGCTGGTGGCGGTGGGGCGGAAGGACCGGGCGTTGTTGGTGCTG
AAAATGCGGCGCCTCCGCGAAGACGAGCAGGTCAAGGCTGAGTCGCAGTT
GATGAATATGGAGCAGCTCATTACCCAAATTGAATGGGAGACTCAGCAGA
TGCAGGTGTTTGATGCGCTCAAGAGTGGTAATCAGGCGTTGGACGCCATT
CACGAAATCATGAGTTTAGAGGAGGTGGAGAAACTGATGGCAGACACGGC
CGACTCCATCGAATACGAGCAAGAGGTATCCCGGCTCTTGTCAGGCAGCC
TGTCCGCCGGGGCGGAGGAAGAAGTCATGATGGAGTTCGAGGAGCTGCAG
GCATTAACAGGCTTGGTTCCCGATGCCGCTGCCCCATTCCCGGTCACTTC
CGCTGCTCCTGCCGTCACCGACGCCGAGGCTCCACCCATGGCAGCAGAGG
AGAAAGAGGCAGTGGCAGGAAAGCCATCGAAAGCACCGCAAGCAGGTACT
CTTATACATGACTTGCCTGACGTACCAACGCACGAGCCGGTTGTCAAACC
GCTGGAGAAAGAAGAAGAGGTAGTAGCAGCCGGAGCAGCAGTATCAGGAA
CAGGACTGCAGAAGGATAGTGTCAGGGTGGCCGTTACGGGTTAAAAAAGA
GTAAAGGAATTGGATGTACAGATTAGGCACAGTCAAAGGTACAAAGGATG
AGTGTACCTAAATCAAAACGCAGAGATAAATGGAAGGAAGCAAGGGTGAG
GCCCAATCGCTTGTG
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protein sequence of jgi.p|Nanoce1779_2|596507

>mRNA_6839-protein ID=mRNA_6839-protein|Name=jgi.p|Nanoce1779_2|596507|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MGGLFSRHHGHGRKPKVLVTDHDRAVLDLKIAKDKLKRYQIKMRSESIRL
TEQAKELVAVGRKDRALLVLKMRRLREDEQVKAESQLMNMEQLITQIEWE
TQQMQVFDALKSGNQALDAIHEIMSLEEVEKLMADTADSIEYEQEVSRLL
SGSLSAGAEEEVMMEFEELQALTGLVPDAAAPFPVTSAAPAVTDAEAPPM
AAEEKEAVAGKPSKAPQAGTLIHDLPDVPTHEPVVKPLEKEEEVVAAGAA
VSGTGLQKDSVRVAVTG*
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mRNA from alignment at scaffold_17:229936..231200+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6839 ID=mRNA_6839|Name=jgi.p|Nanoce1779_2|596507|organism=Nannochloropsis oceanica|type=mRNA|length=1265bp|location=Sequence derived from alignment at scaffold_17:229936..231200+ (Nannochloropsis oceanica)
GCGCTTCTTGGCCCACAGGCTAGTTTCGCTCTCCTTTCCTTCTTTGCCCC
TGTGATTTGTGCGGAAATGCGTCAGTGAAAGAATGCCTGCGAGCCACGAG
GAGGACAAGGCACATGGCTTCCTGTCCCTGCCCTACACGATGTCAGGAAG
GACTGTGTTTTGAAATACAATTCGTGAAGAGGACAAAGCCAATAGAAGCA
CGTCATCATGTTCGCCGTTGGGCTGCTGGCTGCTGGTACGTGGGCGGAGC
CTCTGTGACCTTTCTACCACGCCCTACGCAAAACCCCGCTGCCCTCAGCC
TACCACTCAGCATATCGACCATCTCCCCACAGACAATATAATGGGTGGTC
TCTTTAGCAGGCACCACGGACACGGGCGCAAGCCCAAAGTCCTAGTCACC
GACCATGACCGCGCGGTGCTTGACCTCAAAATTGCGAAGGACAAACTGAA
GCGGTACCAAATCAAGATGCGAAGCGAGTCAATACGCTTGACAGAGCAAG
CCAAAGAGCTGGTGGCGGTGGGGCGGAAGGACCGGGCGTTGTTGGTGCTG
AAAATGCGGCGCCTCCGCGAAGACGAGCAGGTCAAGGCTGAGTCGCAGTT
GATGAATATGGAGCAGCTCATTACCCAAATTGAATGGGAGACTCAGCAGA
TGCAGGTGTTTGATGCGCTCAAGAGTGGTAATCAGGCGTTGGACGCCATT
CACGAAATCATGAGTTTAGAGGAGGTGGAGAAACTGATGGCAGACACGGC
CGACTCCATCGAATACGAGCAAGAGGTATCCCGGCTCTTGTCAGGCAGCC
TGTCCGCCGGGGCGGAGGAAGAAGTCATGATGGAGTTCGAGGAGCTGCAG
GCATTAACAGGCTTGGTTCCCGATGCCGCTGCCCCATTCCCGGTCACTTC
CGCTGCTCCTGCCGTCACCGACGCCGAGGCTCCACCCATGGCAGCAGAGG
AGAAAGAGGCAGTGGCAGGAAAGCCATCGAAAGCACCGCAAGCAGGTACT
CTTATACATGACTTGCCTGACGTACCAACGCACGAGCCGGTTGTCAAACC
GCTGGAGAAAGAAGAAGAGGTAGTAGCAGCCGGAGCAGCAGTATCAGGAA
CAGGACTGCAGAAGGATAGTGTCAGGGTGGCCGTTACGGGTTAAAAAAGA
GTAAAGGAATTGGATGTACAGATTAGGCACAGTCAAAGGTACAAAGGATG
AGTGTACCTAAATCAAAACGCAGAGATAAATGGAAGGAAGCAAGGGTGAG
GCCCAATCGCTTGTG
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Coding sequence (CDS) from alignment at scaffold_17:229936..231200+

>mRNA_6839 ID=mRNA_6839|Name=jgi.p|Nanoce1779_2|596507|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_17:229936..231200+ (Nannochloropsis oceanica)
ATGGGTGGTCTCTTTAGCAGGCACCACGGACACGGGCGCAAGCCCAAAGT
CCTAGTCACCGACCATGACCGCGCGGTGCTTGACCTCAAAATTGCGAAGG
ACAAACTGAAGCGGTACCAAATCAAGATGCGAAGCGAGTCAATACGCTTG
ACAGAGCAAGCCAAAGAGCTGGTGGCGGTGGGGCGGAAGGACCGGGCGTT
GTTGGTGCTGAAAATGCGGCGCCTCCGCGAAGACGAGCAGGTCAAGGCTG
AGTCGCAGTTGATGAATATGGAGCAGCTCATTACCCAAATTGAATGGGAG
ACTCAGCAGATGCAGGTGTTTGATGCGCTCAAGAGTGGTAATCAGGCGTT
GGACGCCATTCACGAAATCATGAGTTTAGAGGAGGTGGAGAAACTGATGG
CAGACACGGCCGACTCCATCGAATACGAGCAAGAGGTATCCCGGCTCTTG
TCAGGCAGCCTGTCCGCCGGGGCGGAGGAAGAAGTCATGATGGAGTTCGA
GGAGCTGCAGGCATTAACAGGCTTGGTTCCCGATGCCGCTGCCCCATTCC
CGGTCACTTCCGCTGCTCCTGCCGTCACCGACGCCGAGGCTCCACCCATG
GCAGCAGAGGAGAAAGAGGCAGTGGCAGGAAAGCCATCGAAAGCACCGCA
AGCAGGTACTCTTATACATGACTTGCCTGACGTACCAACGCACGAGCCGG
TTGTCAAACCGCTGGAGAAAGAAGAAGAGGTAGTAGCAGCCGGAGCAGCA
GTATCAGGAACAGGACTGCAGAAGGATAGTGTCAGGGTGGCCGTTACGGG
TTAA
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Synonyms
Publications