jgi.p|Nanoce1779_2|596504, mRNA_6837 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596504
Unique Name	mRNA_6837
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2283
Alignment location	scaffold_17:224841..227123 +

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Properties


Property Name	Value
TranscriptId	596590
Track	FilteredModels2
ProteinId	596504

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:224841..227123 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596504	gene_6837	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596504	mRNA_6837-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6837	CDS_6837	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:224841..227123+
coding sequence from alignment at scaffold_17:224841..227123+

mRNA sequence

>mRNA_6837 ID=mRNA_6837|Name=jgi.p|Nanoce1779_2|596504|organism=Nannochloropsis oceanica|type=mRNA|length=2283bp
ACAGGTCCGCCGCCGCCGCCGCAGCCCGGCCTCCTTCTGCAGCTCTTCGC
CCAGCCCCCTTCCCGCCAGCACCTCGTCCAGCCCGCCACCCTACCCTCAC
AGAAGCAGAAATGGTTTATCAAAAGCGCAAAATTCTTGGCGATATTACGG
TTGCCGCCCTCTTGGGCACACACCCATACCGCAGCACCGGCGATGCCGAT
GGCGACGCAAGCGGGAAACGCCAGGTCCGTCCTTTATATGTGTCGTGGCT
TTTCCCTCCAGCCCAACCTCCTGACCTTCGCTCTTCCCTTTCTCTCGTAC
ACAACTCACCCGGCTACAGCGCCTCCGCTCGAGCACTTCCAAGTCCAACT
ATACTGCCCAGATTCAAGACGCCCCCCGCCGCATGACCCGGCGTTCCTCC
GCGTTAGCCGCCACCTGCCCATCCACCTCTGCTGCCGATGCTTTTCAAAA
AGGACCCTCCCATGCCGACAAGGACGACAGCACCGCCTCCCGACGCCTCT
ACTCCACTCAAGCCTTATCCTGTCCCCGCAGCATCAACACTAGTATCAAC
GACGCTGGCAATCTCCTGGCTTGCCATGAGGCCTTGGCTCTAAAAGAGCC
CGCCATGCATATCACGCCTGCTGCTCTGTCTGCTTTCTCCCGCAGATCTG
TTGCCTCCCCCACCGAGGCCGCCAACCGCCACCTCAACACTCACTTGAAG
TCTTCTTCTTCCTCCTCTCCCTCCCCTTCCTCTTCTTCCTTGTCCTCCTC
TCCTAACCTACCCCCCGGCATCGTCGACATTGACGACATTCAAAGCCAGC
AACCCCGCAGCAACCACTACAGTAGTAGCAGCAGCAGCAGCAGTAGCAGC
AGCAGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAGCAACTGCTCGTTCGACACGCATCAGCAAGTCAATCTTGCGAACATTG
GCGCCGCCTGTGGCCCCAACCACCATCCGGCAGCAACTGACAGCACGCCC
CAACGGTTGGCAGCCTACAGCCGCGATTACTTCACCTACCTCAGAGAACG
AGAACGCGAGCAGCAAGACAGGCCCATGGCTGACTATTTGGCTCGGATGC
AAGGTGGGGCTTTGACTCAAGATATGCGCGCGTTGCTCATTGATTGGTTA
GTCACAGTGTGTGAGGAATGCGAGCTGATGCCTTCAACCCTATACCATTG
CGTGGAACTCGTCGATCGTGCCCTCAGCAAAGTAATCGTAGCCAAAGAAC
AGCTGCAGTGCCTGGGGTGTGCCTGTCTATTCGTCGCCTGCAAATTCGAA
GAAACTACTGTCCCGCCCCTGGAAGAATTCACATATATGGCCGCTGAATC
CTTCACTAAAAAACAACTCACCGACCTCGAGCTCCGTGTAGTTGAAGCCC
TCTCCTTCCGCGTCTCCACTGTAACGAGCTACAATTTTCTCCCCCGCTTC
ATCCTTGCGGCTGGATCCCGTCCAAGAGAAACAGCCCTGGTGCACTACCT
CTCTGAATTGTCCCTCCTCCACTACGAATTCCTCGCCTTTCCTCCCTCCA
TCCGCGCTGCTGCTGCTCTTTACCTGGCTCGACAGACGTTGGCGGCATCT
ACTCCTGACCCCATCCGCCGGACGGCCGAGGAAAGGAATGTCTGGACTCC
TACTATTGCTCATTACACAGGGTATAAACCTGTGACTGACTTGCGGTTGC
AGGCGTGTGTGAGGTTGTTGAGGAGAGCGCATGCGGGGGCGGAGTGGTCT
ACTTACGAGGCGTTGAAAGTCAAGTATACCGAACCGGCGCTATTGCACGT
GGCGGAGATTGCGTGTTTGGAGGACGAACAATTGGGTTTTCCTTCCTCTT
CGAATTAGACACCATGGAGGGAATTAGAGGAAGAAGAAAGAGTAGATGGA
GGAGATATGTAACGACAGCTCGATTAGAAGAGCAATGACCAAAGTAAAGG
TAGCTTTCAGACGAAGAAAAGGAGAGGCGCATATGCCATGTTTGCCCTAT
TTTGTGCGTGTGATGATTAGATGAACTGAATGTGAATGAGATATAATTTG
AAGTCTTCCAAAAAGAAGGGTACTGAAATGTGTGCAAGCTGACCCAACAT
AGGCACTTCTTCCTCTTCTTCCTCCTCCCCCGTCCAGCGACTGTCATCTT
GCTTGCCTTGGCCGTCTACAAGGAGGCCGACCAAAGCAAACGCATGTTGC
TGGGTTTTGAGTGAGTATGAACAGTGGGAAAATACCAGAAGGTGCCCATC
CCCATAAAAGCAAACTAGACATAGCGATATCCT

protein sequence of jgi.p|Nanoce1779_2|596504

>mRNA_6837-protein ID=mRNA_6837-protein|Name=jgi.p|Nanoce1779_2|596504|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MTRRSSALAATCPSTSAADAFQKGPSHADKDDSTASRRLYSTQALSCPRS
INTSINDAGNLLACHEALALKEPAMHITPAALSAFSRRSVASPTEAANRH
LNTHLKSSSSSSPSPSSSSLSSSPNLPPGIVDIDDIQSQQPRSNHYSSSS
SSSSSSSSSNNNNNNNNNNNNNNSNCSFDTHQQVNLANIGAACGPNHHPA
ATDSTPQRLAAYSRDYFTYLREREREQQDRPMADYLARMQGGALTQDMRA
LLIDWLVTVCEECELMPSTLYHCVELVDRALSKVIVAKEQLQCLGCACLF
VACKFEETTVPPLEEFTYMAAESFTKKQLTDLELRVVEALSFRVSTVTSY
NFLPRFILAAGSRPRETALVHYLSELSLLHYEFLAFPPSIRAAAALYLAR
QTLAASTPDPIRRTAEERNVWTPTIAHYTGYKPVTDLRLQACVRLLRRAH
AGAEWSTYEALKVKYTEPALLHVAEIACLEDEQLGFPSSSN*

mRNA from alignment at scaffold_17:224841..227123+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6837 ID=mRNA_6837|Name=jgi.p|Nanoce1779_2|596504|organism=Nannochloropsis oceanica|type=mRNA|length=2283bp|location=Sequence derived from alignment at scaffold_17:224841..227123+ (Nannochloropsis oceanica)
ACAGGTCCGCCGCCGCCGCCGCAGCCCGGCCTCCTTCTGCAGCTCTTCGC
CCAGCCCCCTTCCCGCCAGCACCTCGTCCAGCCCGCCACCCTACCCTCAC
AGAAGCAGAAATGGTTTATCAAAAGCGCAAAATTCTTGGCGATATTACGG
TTGCCGCCCTCTTGGGCACACACCCATACCGCAGCACCGGCGATGCCGAT
GGCGACGCAAGCGGGAAACGCCAGGTCCGTCCTTTATATGTGTCGTGGCT
TTTCCCTCCAGCCCAACCTCCTGACCTTCGCTCTTCCCTTTCTCTCGTAC
ACAACTCACCCGGCTACAGCGCCTCCGCTCGAGCACTTCCAAGTCCAACT
ATACTGCCCAGATTCAAGACGCCCCCCGCCGCATGACCCGGCGTTCCTCC
GCGTTAGCCGCCACCTGCCCATCCACCTCTGCTGCCGATGCTTTTCAAAA
AGGACCCTCCCATGCCGACAAGGACGACAGCACCGCCTCCCGACGCCTCT
ACTCCACTCAAGCCTTATCCTGTCCCCGCAGCATCAACACTAGTATCAAC
GACGCTGGCAATCTCCTGGCTTGCCATGAGGCCTTGGCTCTAAAAGAGCC
CGCCATGCATATCACGCCTGCTGCTCTGTCTGCTTTCTCCCGCAGATCTG
TTGCCTCCCCCACCGAGGCCGCCAACCGCCACCTCAACACTCACTTGAAG
TCTTCTTCTTCCTCCTCTCCCTCCCCTTCCTCTTCTTCCTTGTCCTCCTC
TCCTAACCTACCCCCCGGCATCGTCGACATTGACGACATTCAAAGCCAGC
AACCCCGCAGCAACCACTACAGTAGTAGCAGCAGCAGCAGCAGTAGCAGC
AGCAGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAGCAACTGCTCGTTCGACACGCATCAGCAAGTCAATCTTGCGAACATTG
GCGCCGCCTGTGGCCCCAACCACCATCCGGCAGCAACTGACAGCACGCCC
CAACGGTTGGCAGCCTACAGCCGCGATTACTTCACCTACCTCAGAGAACG
AGAACGCGAGCAGCAAGACAGGCCCATGGCTGACTATTTGGCTCGGATGC
AAGGTGGGGCTTTGACTCAAGATATGCGCGCGTTGCTCATTGATTGGTTA
GTCACAGTGTGTGAGGAATGCGAGCTGATGCCTTCAACCCTATACCATTG
CGTGGAACTCGTCGATCGTGCCCTCAGCAAAGTAATCGTAGCCAAAGAAC
AGCTGCAGTGCCTGGGGTGTGCCTGTCTATTCGTCGCCTGCAAATTCGAA
GAAACTACTGTCCCGCCCCTGGAAGAATTCACATATATGGCCGCTGAATC
CTTCACTAAAAAACAACTCACCGACCTCGAGCTCCGTGTAGTTGAAGCCC
TCTCCTTCCGCGTCTCCACTGTAACGAGCTACAATTTTCTCCCCCGCTTC
ATCCTTGCGGCTGGATCCCGTCCAAGAGAAACAGCCCTGGTGCACTACCT
CTCTGAATTGTCCCTCCTCCACTACGAATTCCTCGCCTTTCCTCCCTCCA
TCCGCGCTGCTGCTGCTCTTTACCTGGCTCGACAGACGTTGGCGGCATCT
ACTCCTGACCCCATCCGCCGGACGGCCGAGGAAAGGAATGTCTGGACTCC
TACTATTGCTCATTACACAGGGTATAAACCTGTGACTGACTTGCGGTTGC
AGGCGTGTGTGAGGTTGTTGAGGAGAGCGCATGCGGGGGCGGAGTGGTCT
ACTTACGAGGCGTTGAAAGTCAAGTATACCGAACCGGCGCTATTGCACGT
GGCGGAGATTGCGTGTTTGGAGGACGAACAATTGGGTTTTCCTTCCTCTT
CGAATTAGACACCATGGAGGGAATTAGAGGAAGAAGAAAGAGTAGATGGA
GGAGATATGTAACGACAGCTCGATTAGAAGAGCAATGACCAAAGTAAAGG
TAGCTTTCAGACGAAGAAAAGGAGAGGCGCATATGCCATGTTTGCCCTAT
TTTGTGCGTGTGATGATTAGATGAACTGAATGTGAATGAGATATAATTTG
AAGTCTTCCAAAAAGAAGGGTACTGAAATGTGTGCAAGCTGACCCAACAT
AGGCACTTCTTCCTCTTCTTCCTCCTCCCCCGTCCAGCGACTGTCATCTT
GCTTGCCTTGGCCGTCTACAAGGAGGCCGACCAAAGCAAACGCATGTTGC
TGGGTTTTGAGTGAGTATGAACAGTGGGAAAATACCAGAAGGTGCCCATC
CCCATAAAAGCAAACTAGACATAGCGATATCCT

Coding sequence (CDS) from alignment at scaffold_17:224841..227123+

>mRNA_6837 ID=mRNA_6837|Name=jgi.p|Nanoce1779_2|596504|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_17:224841..227123+ (Nannochloropsis oceanica)
ATGACCCGGCGTTCCTCCGCGTTAGCCGCCACCTGCCCATCCACCTCTGC
TGCCGATGCTTTTCAAAAAGGACCCTCCCATGCCGACAAGGACGACAGCA
CCGCCTCCCGACGCCTCTACTCCACTCAAGCCTTATCCTGTCCCCGCAGC
ATCAACACTAGTATCAACGACGCTGGCAATCTCCTGGCTTGCCATGAGGC
CTTGGCTCTAAAAGAGCCCGCCATGCATATCACGCCTGCTGCTCTGTCTG
CTTTCTCCCGCAGATCTGTTGCCTCCCCCACCGAGGCCGCCAACCGCCAC
CTCAACACTCACTTGAAGTCTTCTTCTTCCTCCTCTCCCTCCCCTTCCTC
TTCTTCCTTGTCCTCCTCTCCTAACCTACCCCCCGGCATCGTCGACATTG
ACGACATTCAAAGCCAGCAACCCCGCAGCAACCACTACAGTAGTAGCAGC
AGCAGCAGCAGTAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAGCAACTGCTCGTTCGACACGCATCAGCAAG
TCAATCTTGCGAACATTGGCGCCGCCTGTGGCCCCAACCACCATCCGGCA
GCAACTGACAGCACGCCCCAACGGTTGGCAGCCTACAGCCGCGATTACTT
CACCTACCTCAGAGAACGAGAACGCGAGCAGCAAGACAGGCCCATGGCTG
ACTATTTGGCTCGGATGCAAGGTGGGGCTTTGACTCAAGATATGCGCGCG
TTGCTCATTGATTGGTTAGTCACAGTGTGTGAGGAATGCGAGCTGATGCC
TTCAACCCTATACCATTGCGTGGAACTCGTCGATCGTGCCCTCAGCAAAG
TAATCGTAGCCAAAGAACAGCTGCAGTGCCTGGGGTGTGCCTGTCTATTC
GTCGCCTGCAAATTCGAAGAAACTACTGTCCCGCCCCTGGAAGAATTCAC
ATATATGGCCGCTGAATCCTTCACTAAAAAACAACTCACCGACCTCGAGC
TCCGTGTAGTTGAAGCCCTCTCCTTCCGCGTCTCCACTGTAACGAGCTAC
AATTTTCTCCCCCGCTTCATCCTTGCGGCTGGATCCCGTCCAAGAGAAAC
AGCCCTGGTGCACTACCTCTCTGAATTGTCCCTCCTCCACTACGAATTCC
TCGCCTTTCCTCCCTCCATCCGCGCTGCTGCTGCTCTTTACCTGGCTCGA
CAGACGTTGGCGGCATCTACTCCTGACCCCATCCGCCGGACGGCCGAGGA
AAGGAATGTCTGGACTCCTACTATTGCTCATTACACAGGGTATAAACCTG
TGACTGACTTGCGGTTGCAGGCGTGTGTGAGGTTGTTGAGGAGAGCGCAT
GCGGGGGCGGAGTGGTCTACTTACGAGGCGTTGAAAGTCAAGTATACCGA
ACCGGCGCTATTGCACGTGGCGGAGATTGCGTGTTTGGAGGACGAACAAT
TGGGTTTTCCTTCCTCTTCGAATTAG

Synonyms

Publications