jgi.p|Nanoce1779_2|596493, mRNA_6835 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596493
Unique NamemRNA_6835
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length998
Alignment locationscaffold_17:220144..221141 -

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Properties
Property NameValue
TranscriptId596579
TrackFilteredModels2
ProteinId596493
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:220144..221141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596493gene_6835Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596493mRNA_6835-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6835CDS_6835Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6835 ID=mRNA_6835|Name=jgi.p|Nanoce1779_2|596493|organism=Nannochloropsis oceanica|type=mRNA|length=998bp
AACTGTGTGAAGCGTGCGGCTCCCGCAAATCCTGCAACTCGGCGCCTTGT
TCTTCGGCTTTGTGTCTCACTTCCACGCCGCTCTCTACACTATACAGGCC
TGTCTGCATGCATCCGGCGCTGTTGATCCTGATCTTGCTATCCTGTGCGA
ACATTGCTGCATTTGTCCCCGTTTCTACGAGCACAACGACGCTTCTCTCT
TCCCGATCACGCCGCCTCCTCTCACTCTGCTTGTATCAGTGCTCAATGAC
CACAATGTCCTCCTCTACAAAGCCGTCTTTGACTTTCGTGACCGGCAACG
CCAAGAAGCTCGAGGAAGTGCGGGCCATTCTGATTGCAGGGACAGAGACT
GGCAAGGAGCTACCCTTCGAAATCATCTCCGAAAAGCTTGATCTGCCGGA
ATTGCAAGGTGAGCCTGAAGACGTGGCAAGGGAGAAATGCTTGCTGGCCG
TAAAGGAGACGAAGGGACCGACGATTGTCGAAGACACGTGCTTGTGTTTT
AATGCCTTGGGCGGGCTTCCGGGCGTGTATATCAAGTGGTTCTTGGAAAA
GCTGGGACATGAGGGACTTAATAACCTCCTGGTTGCTTACGAAGATAAGA
CCGCGTATGCCTTGTGTACATTTGCTTACTGCCCTGGACCAGGACAAGAA
GTTTTGATCTTTGATGGGCGAACCCCGGGAAAGATTGTGCCGGCCCGGGG
GCCGCATGCGTTTGGGTGGGACCCTGTGTTTGAGCCTTTCGTGGGTCAGC
CGGAGGGGGGTTTACCGTTGCAGACATATGCCGAAATGGACAAGGATGTG
AAGAACACGATCTCACATCGGTACCGGGCGTTGGCGAAGTTGAGAGATTT
TTTGATGACTCAGAATGGAAATGGAGGAGGAAGAAGACATGGAGAAGGGC
AGGAGGAAGGGGATGGGAAGGCGAAGGAGACTTGATTGTTGAGAGAGCCG
AAGTGAAAACGATTTACTGACTTATTGAAAAGAAATAGAGTGTACATT
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protein sequence of jgi.p|Nanoce1779_2|596493

>mRNA_6835-protein ID=mRNA_6835-protein|Name=jgi.p|Nanoce1779_2|596493|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MHPALLILILLSCANIAAFVPVSTSTTTLLSSRSRRLLSLCLYQCSMTTM
SSSTKPSLTFVTGNAKKLEEVRAILIAGTETGKELPFEIISEKLDLPELQ
GEPEDVAREKCLLAVKETKGPTIVEDTCLCFNALGGLPGVYIKWFLEKLG
HEGLNNLLVAYEDKTAYALCTFAYCPGPGQEVLIFDGRTPGKIVPARGPH
AFGWDPVFEPFVGQPEGGLPLQTYAEMDKDVKNTISHRYRALAKLRDFLM
TQNGNGGGRRHGEGQEEGDGKAKET*
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mRNA from alignment at scaffold_17:220144..221141-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6835 ID=mRNA_6835|Name=jgi.p|Nanoce1779_2|596493|organism=Nannochloropsis oceanica|type=mRNA|length=998bp|location=Sequence derived from alignment at scaffold_17:220144..221141- (Nannochloropsis oceanica)
AACTGTGTGAAGCGTGCGGCTCCCGCAAATCCTGCAACTCGGCGCCTTGT
TCTTCGGCTTTGTGTCTCACTTCCACGCCGCTCTCTACACTATACAGGCC
TGTCTGCATGCATCCGGCGCTGTTGATCCTGATCTTGCTATCCTGTGCGA
ACATTGCTGCATTTGTCCCCGTTTCTACGAGCACAACGACGCTTCTCTCT
TCCCGATCACGCCGCCTCCTCTCACTCTGCTTGTATCAGTGCTCAATGAC
CACAATGTCCTCCTCTACAAAGCCGTCTTTGACTTTCGTGACCGGCAACG
CCAAGAAGCTCGAGGAAGTGCGGGCCATTCTGATTGCAGGGACAGAGACT
GGCAAGGAGCTACCCTTCGAAATCATCTCCGAAAAGCTTGATCTGCCGGA
ATTGCAAGGTGAGCCTGAAGACGTGGCAAGGGAGAAATGCTTGCTGGCCG
TAAAGGAGACGAAGGGACCGACGATTGTCGAAGACACGTGCTTGTGTTTT
AATGCCTTGGGCGGGCTTCCGGGCGTGTATATCAAGTGGTTCTTGGAAAA
GCTGGGACATGAGGGACTTAATAACCTCCTGGTTGCTTACGAAGATAAGA
CCGCGTATGCCTTGTGTACATTTGCTTACTGCCCTGGACCAGGACAAGAA
GTTTTGATCTTTGATGGGCGAACCCCGGGAAAGATTGTGCCGGCCCGGGG
GCCGCATGCGTTTGGGTGGGACCCTGTGTTTGAGCCTTTCGTGGGTCAGC
CGGAGGGGGGTTTACCGTTGCAGACATATGCCGAAATGGACAAGGATGTG
AAGAACACGATCTCACATCGGTACCGGGCGTTGGCGAAGTTGAGAGATTT
TTTGATGACTCAGAATGGAAATGGAGGAGGAAGAAGACATGGAGAAGGGC
AGGAGGAAGGGGATGGGAAGGCGAAGGAGACTTGATTGTTGAGAGAGCCG
AAGTGAAAACGATTTACTGACTTATTGAAAAGAAATAGAGTGTACATT
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Coding sequence (CDS) from alignment at scaffold_17:220144..221141-

>mRNA_6835 ID=mRNA_6835|Name=jgi.p|Nanoce1779_2|596493|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_17:220144..221141- (Nannochloropsis oceanica)
ATGCATCCGGCGCTGTTGATCCTGATCTTGCTATCCTGTGCGAACATTGC
TGCATTTGTCCCCGTTTCTACGAGCACAACGACGCTTCTCTCTTCCCGAT
CACGCCGCCTCCTCTCACTCTGCTTGTATCAGTGCTCAATGACCACAATG
TCCTCCTCTACAAAGCCGTCTTTGACTTTCGTGACCGGCAACGCCAAGAA
GCTCGAGGAAGTGCGGGCCATTCTGATTGCAGGGACAGAGACTGGCAAGG
AGCTACCCTTCGAAATCATCTCCGAAAAGCTTGATCTGCCGGAATTGCAA
GGTGAGCCTGAAGACGTGGCAAGGGAGAAATGCTTGCTGGCCGTAAAGGA
GACGAAGGGACCGACGATTGTCGAAGACACGTGCTTGTGTTTTAATGCCT
TGGGCGGGCTTCCGGGCGTGTATATCAAGTGGTTCTTGGAAAAGCTGGGA
CATGAGGGACTTAATAACCTCCTGGTTGCTTACGAAGATAAGACCGCGTA
TGCCTTGTGTACATTTGCTTACTGCCCTGGACCAGGACAAGAAGTTTTGA
TCTTTGATGGGCGAACCCCGGGAAAGATTGTGCCGGCCCGGGGGCCGCAT
GCGTTTGGGTGGGACCCTGTGTTTGAGCCTTTCGTGGGTCAGCCGGAGGG
GGGTTTACCGTTGCAGACATATGCCGAAATGGACAAGGATGTGAAGAACA
CGATCTCACATCGGTACCGGGCGTTGGCGAAGTTGAGAGATTTTTTGATG
ACTCAGAATGGAAATGGAGGAGGAAGAAGACATGGAGAAGGGCAGGAGGA
AGGGGATGGGAAGGCGAAGGAGACTTGA
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Synonyms
Publications