jgi.p|Nanoce1779_2|596488, mRNA_6834 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596488
Unique Name	mRNA_6834
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3195
Alignment location	scaffold_17:216911..220105 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596574
Track	FilteredModels2
ProteinId	596488

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:216911..220105 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596488	gene_6834	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596488	mRNA_6834-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6834	CDS_6834	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:216911..220105+
coding sequence from alignment at scaffold_17:216911..220105+

mRNA sequence

>mRNA_6834 ID=mRNA_6834|Name=jgi.p|Nanoce1779_2|596488|organism=Nannochloropsis oceanica|type=mRNA|length=3195bp
AGACAGGTGCGTTTTGGCCAGGCCGGCAGCCATTATTATTGCATTTCCTC
CACACCACCCCAACCGACCCAACGCAGCATCAACAGCAATCATGGGGTCG
ACGCGATGTCCCTATTTCATGGCCTTGATACTGGCGTTTTTCGCTCAGTC
CCAAGCTTTTGCTGGACAAATCCTTGTGACAGGTACGTGTGGCAAGTAGT
TGCGCCGTAATGGTTTTTTTTGTCATCTTCATTTCCTTCCATCCATAGAC
GGTGACGTACGTCCCTACCTGTGTGTAGAGCGGACCTCCTTCCCCCTCTC
CCTGTCCCACCTTCATCCTTCTGCCCCTCCCCGCTTGTTCGCCTGGAAAT
TTAGTACAGTGTTCTAGAGACGTCAAATTTATCTCTGTCTCCCCCCGAAA
AAAGGCGGAGCGGGCTACATTGGCTCGCACACATGTTGCGAGCTCCTCAA
GGCTGGCCGTCGCATCGTCGTCGTCGACAACCTAATCAACAGTGTTCAAG
ACTCATTGGAACGTGTCAAGGAAATTACAGGGTGTGCCCCGGGGGCGCTT
GAATTCCGAGAATTGGACCTACTGGACAAGAAAGGGTTGGAGGGGCTGTT
CAAAGAGTATACGTTTGATGCTTGTATTCATTTTGCGGGCCTGAAGGCCG
TCGGTGAGAGTGTGAGCCAGCCAATGAGGTACTATCATAATAACATCGTG
GGTACACTGAATTTGTTAGAGGTTATGGATAAGCACAAGTAAGTACTTGT
GGAAGGGAAGGAAGGGGAGGGATGGAGGAAGCAAGGGAAGGGATGAGGCT
AATTTAATATATTCGATGATTAGTGAACTAGATTCACATACCATCTCGTC
TCCCCGCTACTCCTTTCTCACCCTAGATGCAAAAACTTTGTATTCTCTTC
CTCCGCCACCGTCTACGGGGATCCCGAAAAGCTGCCAATCACCGAAGACC
AACGCCTGCAAGCCACCAATCCCTACGGCCGCACCAAGCTCTTCATCGAA
GAAATCCTCCGCGACCAGCATAAAGCAGACGCAGAATGGTCCATTCTCAT
CCTGCGGTATTTTAACCCCATCGGCGCTCACCCCTCAGGGAGGATAGGCG
AAGACCCTTTAGGTATCCCTAATAACCTCATGCCTTTTGTCGCACAAGTC
TGTGTCGGACGCCGTGATGCCCTCAGTGTGTTTGGTAATGACTATGCGAC
CCCAGACGGCACCGGAGTAAGAGATTATATTCACGTGGTGGACCTCGCGG
AAGGCCACGTGGCTGCTGTGGATAGGATGATGGAGGCAAGGGCGGAGGGG
GGAAAGAGTCTCGGCTGTGTGCCAGTCAACCTGGGGACGGGGGATGGCGT
GAGTGTATTGGAGTTGGTGGCTGCTATGAGGGCGGCAAGTGGGAAGGAAA
TTCCAACAAAAATGGCTGAGAGGAGGCCGGGGGATGTGGCGTCTCTGTAC
ACGGACCCCGGTTTTGCGAATCGGCTTCTGAAATGGAAGGCGACAAGGGG
GGTGAAGGAAATGTGTGAGGACACTTGGCGGTGGCAGAGCCGGAATCCAT
TTGGGTATCGCAAGGCGCCTGAGGCGATGGGGACGTCAAAATCGTAATGT
GAAGGGATGGGGTAGGAAACATCAGAATTAGCTTATGACCTGAACTGTGG
GGGCCAAAATGAAAGGATCCCTCACAACGCATGAAGACTCGGAGACAGAA
ACTGGGGGGAAAAAAGAAATAAAAAGATATCAGATGTTTAAGTGCGACAG
AGAAATGTAGTGAACGTTAAGCTTTCGAATTAAGGAACGTGTCATACTCG
GAGTGGGGAGGTCTTGGGAACTTAACCGAGACGGACGGCTCTGATTTGTG
CTTCACCTGATTCTCATCCTTCCCTCTCACGATGCACCACACAGTTAACC
AATGGCGACCCCTGACGAAAACTACGCAGAGGCAGAGAACCACATGCTTC
AAGTCCAGAAGCTCCTGAGGCAGCAAGCGCCCGTAGCTGAAGTTCTCCGC
GTGCTTAAACAGCTACCCGAGTGGGCTTCGTTGACGTCCCAAGAACGCAT
GCACCATTTTTTGCTCTGCGATCCGGTGCATGACACCTTTCCCTTGGCTC
CTTGGTATCGTGCAAGCTTCATTCGTCACCTTTGCCTCGAATTGGAAGAG
GCGGTTGCAAAGGACGAGGAGGGCAGTGGAGAGGTGATCGAGCCCATCAT
GCGTGAATTGAATGTGCTGCTATGCCAACCCACACTCAATGCTGAGCCCG
GAGAATTGGCGGCGTATTTTATAACATTTGAATGCCCTGTTGTAGTGCCG
ATGTACGTGGATATGGACTCTTCATCGAGTCTACACGAGGAACCCGACGA
GCAGCAGCTGCTGCAGCAGCGACCAAAAATTCTAGCAACCCGCATCGCCC
CCAAAGAAAATGCCGTCGGACTGAAGCTATGGGAGGCTTGCTACGTGCTT
GCTGAGGCTTTGTGTAGCCATCCTAAGCTGTGTCGTGGGCGAGATGTCAT
TGAATTAGGTGCGGGAGTAGGATTACTGGGTCTTGTGGCTGCTTATTGCT
TGGGCGCGGCAAGCGTCACTATGACAGATGTAGATGACAAGGTCCTGTTG
TTTTTGCGGACCAATGTCGAATTTAATGCGGTAGCGACTGCTTCACTTCT
CGCTGCTGATAGTCTTGTTGCTGTGCACGAGGAGAAGGAGACGAAGGGCG
AGGAAGCAGCAGCTGCAGCAGTAGTGCCTCTCATAGAGGTGGCTGCTTTA
GACTGGTCCAGGCCGGTCGAATATAAGGCATTGCTGGACCGTTCTACTCA
ACCGTCTTCCTGCACGTCGAGAAAGGACGTAAAGGAAAGAGATCGAATTA
TTCTTGCAGCTGACTGTATTTACGATCGCGAAGTCATCCCTGCCTTCGTC
GACGTCCTTGCCTATTCCCTCCAACCCCCCACCGGTGGCAGCAGCAGGAA
AACGACTGTGCTTGTCGCCTCCACGATGAGAGATCCCGAGACCTACGCAT
ATTTCGAGGAGGTGGTGAGAGAGAAAGGGTTGGTGATGGACGATGTCACC
ACGATGTTGGGAAGCCAGCCGCCTGACCCTGTCTCCTCCCACGCGCCGTG
GACGTTCTATTGCCCGAATCGCGCTGCGGTCCGAATATGTAGCTTTAGGT
TACGTTCTGATGAGGATGAGGATAGCGACAAGTGAATCAAGAGAG

protein sequence of jgi.p|Nanoce1779_2|596488

>mRNA_6834-protein ID=mRNA_6834-protein|Name=jgi.p|Nanoce1779_2|596488|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MATPDENYAEAENHMLQVQKLLRQQAPVAEVLRVLKQLPEWASLTSQERM
HHFLLCDPVHDTFPLAPWYRASFIRHLCLELEEAVAKDEEGSGEVIEPIM
RELNVLLCQPTLNAEPGELAAYFITFECPVVVPMYVDMDSSSSLHEEPDE
QQLLQQRPKILATRIAPKENAVGLKLWEACYVLAEALCSHPKLCRGRDVI
ELGAGVGLLGLVAAYCLGAASVTMTDVDDKVLLFLRTNVEFNAVATASLL
AADSLVAVHEEKETKGEEAAAAAVVPLIEVAALDWSRPVEYKALLDRSTQ
PSSCTSRKDVKERDRIILAADCIYDREVIPAFVDVLAYSLQPPTGGSSRK
TTVLVASTMRDPETYAYFEEVVREKGLVMDDVTTMLGSQPPDPVSSHAPW
TFYCPNRAAVRICSFRLRSDEDEDSDK*

mRNA from alignment at scaffold_17:216911..220105+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6834 ID=mRNA_6834|Name=jgi.p|Nanoce1779_2|596488|organism=Nannochloropsis oceanica|type=mRNA|length=3195bp|location=Sequence derived from alignment at scaffold_17:216911..220105+ (Nannochloropsis oceanica)
AGACAGGTGCGTTTTGGCCAGGCCGGCAGCCATTATTATTGCATTTCCTC
CACACCACCCCAACCGACCCAACGCAGCATCAACAGCAATCATGGGGTCG
ACGCGATGTCCCTATTTCATGGCCTTGATACTGGCGTTTTTCGCTCAGTC
CCAAGCTTTTGCTGGACAAATCCTTGTGACAGGTACGTGTGGCAAGTAGT
TGCGCCGTAATGGTTTTTTTTGTCATCTTCATTTCCTTCCATCCATAGAC
GGTGACGTACGTCCCTACCTGTGTGTAGAGCGGACCTCCTTCCCCCTCTC
CCTGTCCCACCTTCATCCTTCTGCCCCTCCCCGCTTGTTCGCCTGGAAAT
TTAGTACAGTGTTCTAGAGACGTCAAATTTATCTCTGTCTCCCCCCGAAA
AAAGGCGGAGCGGGCTACATTGGCTCGCACACATGTTGCGAGCTCCTCAA
GGCTGGCCGTCGCATCGTCGTCGTCGACAACCTAATCAACAGTGTTCAAG
ACTCATTGGAACGTGTCAAGGAAATTACAGGGTGTGCCCCGGGGGCGCTT
GAATTCCGAGAATTGGACCTACTGGACAAGAAAGGGTTGGAGGGGCTGTT
CAAAGAGTATACGTTTGATGCTTGTATTCATTTTGCGGGCCTGAAGGCCG
TCGGTGAGAGTGTGAGCCAGCCAATGAGGTACTATCATAATAACATCGTG
GGTACACTGAATTTGTTAGAGGTTATGGATAAGCACAAGTAAGTACTTGT
GGAAGGGAAGGAAGGGGAGGGATGGAGGAAGCAAGGGAAGGGATGAGGCT
AATTTAATATATTCGATGATTAGTGAACTAGATTCACATACCATCTCGTC
TCCCCGCTACTCCTTTCTCACCCTAGATGCAAAAACTTTGTATTCTCTTC
CTCCGCCACCGTCTACGGGGATCCCGAAAAGCTGCCAATCACCGAAGACC
AACGCCTGCAAGCCACCAATCCCTACGGCCGCACCAAGCTCTTCATCGAA
GAAATCCTCCGCGACCAGCATAAAGCAGACGCAGAATGGTCCATTCTCAT
CCTGCGGTATTTTAACCCCATCGGCGCTCACCCCTCAGGGAGGATAGGCG
AAGACCCTTTAGGTATCCCTAATAACCTCATGCCTTTTGTCGCACAAGTC
TGTGTCGGACGCCGTGATGCCCTCAGTGTGTTTGGTAATGACTATGCGAC
CCCAGACGGCACCGGAGTAAGAGATTATATTCACGTGGTGGACCTCGCGG
AAGGCCACGTGGCTGCTGTGGATAGGATGATGGAGGCAAGGGCGGAGGGG
GGAAAGAGTCTCGGCTGTGTGCCAGTCAACCTGGGGACGGGGGATGGCGT
GAGTGTATTGGAGTTGGTGGCTGCTATGAGGGCGGCAAGTGGGAAGGAAA
TTCCAACAAAAATGGCTGAGAGGAGGCCGGGGGATGTGGCGTCTCTGTAC
ACGGACCCCGGTTTTGCGAATCGGCTTCTGAAATGGAAGGCGACAAGGGG
GGTGAAGGAAATGTGTGAGGACACTTGGCGGTGGCAGAGCCGGAATCCAT
TTGGGTATCGCAAGGCGCCTGAGGCGATGGGGACGTCAAAATCGTAATGT
GAAGGGATGGGGTAGGAAACATCAGAATTAGCTTATGACCTGAACTGTGG
GGGCCAAAATGAAAGGATCCCTCACAACGCATGAAGACTCGGAGACAGAA
ACTGGGGGGAAAAAAGAAATAAAAAGATATCAGATGTTTAAGTGCGACAG
AGAAATGTAGTGAACGTTAAGCTTTCGAATTAAGGAACGTGTCATACTCG
GAGTGGGGAGGTCTTGGGAACTTAACCGAGACGGACGGCTCTGATTTGTG
CTTCACCTGATTCTCATCCTTCCCTCTCACGATGCACCACACAGTTAACC
AATGGCGACCCCTGACGAAAACTACGCAGAGGCAGAGAACCACATGCTTC
AAGTCCAGAAGCTCCTGAGGCAGCAAGCGCCCGTAGCTGAAGTTCTCCGC
GTGCTTAAACAGCTACCCGAGTGGGCTTCGTTGACGTCCCAAGAACGCAT
GCACCATTTTTTGCTCTGCGATCCGGTGCATGACACCTTTCCCTTGGCTC
CTTGGTATCGTGCAAGCTTCATTCGTCACCTTTGCCTCGAATTGGAAGAG
GCGGTTGCAAAGGACGAGGAGGGCAGTGGAGAGGTGATCGAGCCCATCAT
GCGTGAATTGAATGTGCTGCTATGCCAACCCACACTCAATGCTGAGCCCG
GAGAATTGGCGGCGTATTTTATAACATTTGAATGCCCTGTTGTAGTGCCG
ATGTACGTGGATATGGACTCTTCATCGAGTCTACACGAGGAACCCGACGA
GCAGCAGCTGCTGCAGCAGCGACCAAAAATTCTAGCAACCCGCATCGCCC
CCAAAGAAAATGCCGTCGGACTGAAGCTATGGGAGGCTTGCTACGTGCTT
GCTGAGGCTTTGTGTAGCCATCCTAAGCTGTGTCGTGGGCGAGATGTCAT
TGAATTAGGTGCGGGAGTAGGATTACTGGGTCTTGTGGCTGCTTATTGCT
TGGGCGCGGCAAGCGTCACTATGACAGATGTAGATGACAAGGTCCTGTTG
TTTTTGCGGACCAATGTCGAATTTAATGCGGTAGCGACTGCTTCACTTCT
CGCTGCTGATAGTCTTGTTGCTGTGCACGAGGAGAAGGAGACGAAGGGCG
AGGAAGCAGCAGCTGCAGCAGTAGTGCCTCTCATAGAGGTGGCTGCTTTA
GACTGGTCCAGGCCGGTCGAATATAAGGCATTGCTGGACCGTTCTACTCA
ACCGTCTTCCTGCACGTCGAGAAAGGACGTAAAGGAAAGAGATCGAATTA
TTCTTGCAGCTGACTGTATTTACGATCGCGAAGTCATCCCTGCCTTCGTC
GACGTCCTTGCCTATTCCCTCCAACCCCCCACCGGTGGCAGCAGCAGGAA
AACGACTGTGCTTGTCGCCTCCACGATGAGAGATCCCGAGACCTACGCAT
ATTTCGAGGAGGTGGTGAGAGAGAAAGGGTTGGTGATGGACGATGTCACC
ACGATGTTGGGAAGCCAGCCGCCTGACCCTGTCTCCTCCCACGCGCCGTG
GACGTTCTATTGCCCGAATCGCGCTGCGGTCCGAATATGTAGCTTTAGGT
TACGTTCTGATGAGGATGAGGATAGCGACAAGTGAATCAAGAGAG

Coding sequence (CDS) from alignment at scaffold_17:216911..220105+

>mRNA_6834 ID=mRNA_6834|Name=jgi.p|Nanoce1779_2|596488|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at scaffold_17:216911..220105+ (Nannochloropsis oceanica)
ATGGCGACCCCTGACGAAAACTACGCAGAGGCAGAGAACCACATGCTTCA
AGTCCAGAAGCTCCTGAGGCAGCAAGCGCCCGTAGCTGAAGTTCTCCGCG
TGCTTAAACAGCTACCCGAGTGGGCTTCGTTGACGTCCCAAGAACGCATG
CACCATTTTTTGCTCTGCGATCCGGTGCATGACACCTTTCCCTTGGCTCC
TTGGTATCGTGCAAGCTTCATTCGTCACCTTTGCCTCGAATTGGAAGAGG
CGGTTGCAAAGGACGAGGAGGGCAGTGGAGAGGTGATCGAGCCCATCATG
CGTGAATTGAATGTGCTGCTATGCCAACCCACACTCAATGCTGAGCCCGG
AGAATTGGCGGCGTATTTTATAACATTTGAATGCCCTGTTGTAGTGCCGA
TGTACGTGGATATGGACTCTTCATCGAGTCTACACGAGGAACCCGACGAG
CAGCAGCTGCTGCAGCAGCGACCAAAAATTCTAGCAACCCGCATCGCCCC
CAAAGAAAATGCCGTCGGACTGAAGCTATGGGAGGCTTGCTACGTGCTTG
CTGAGGCTTTGTGTAGCCATCCTAAGCTGTGTCGTGGGCGAGATGTCATT
GAATTAGGTGCGGGAGTAGGATTACTGGGTCTTGTGGCTGCTTATTGCTT
GGGCGCGGCAAGCGTCACTATGACAGATGTAGATGACAAGGTCCTGTTGT
TTTTGCGGACCAATGTCGAATTTAATGCGGTAGCGACTGCTTCACTTCTC
GCTGCTGATAGTCTTGTTGCTGTGCACGAGGAGAAGGAGACGAAGGGCGA
GGAAGCAGCAGCTGCAGCAGTAGTGCCTCTCATAGAGGTGGCTGCTTTAG
ACTGGTCCAGGCCGGTCGAATATAAGGCATTGCTGGACCGTTCTACTCAA
CCGTCTTCCTGCACGTCGAGAAAGGACGTAAAGGAAAGAGATCGAATTAT
TCTTGCAGCTGACTGTATTTACGATCGCGAAGTCATCCCTGCCTTCGTCG
ACGTCCTTGCCTATTCCCTCCAACCCCCCACCGGTGGCAGCAGCAGGAAA
ACGACTGTGCTTGTCGCCTCCACGATGAGAGATCCCGAGACCTACGCATA
TTTCGAGGAGGTGGTGAGAGAGAAAGGGTTGGTGATGGACGATGTCACCA
CGATGTTGGGAAGCCAGCCGCCTGACCCTGTCTCCTCCCACGCGCCGTGG
ACGTTCTATTGCCCGAATCGCGCTGCGGTCCGAATATGTAGCTTTAGGTT
ACGTTCTGATGAGGATGAGGATAGCGACAAGTGA

Synonyms

Publications