Properties
| Property Name | Value |
|---|
| TranscriptId | 596576 |
| Track | FilteredModels2 |
| ProteinId | 596490 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:216988..220105 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6833 ID=mRNA_6833|Name=jgi.p|Nanoce1779_2|596490|organism=Nannochloropsis oceanica|type=mRNA|length=2758bp
CATCAACAGCAATCATGGGGTCGACGCGATGTCCCTATTTCATGGCCTTG
ATACTGGCGTTTTTCGCTCAGTCCCAAGCTTTTGCTGGACAAATCCTTGT
GACAGGCGGAGCGGGCTACATTGGCTCGCACACATGTTGCGAGCTCCTCA
AGGCTGGCCGTCGCATCGTCGTCGTCGACAACCTAATCAACAGTGTTCAA
GACTCATTGGAACGTGTCAAGGAAATTACAGGGTGTGCCCCGGGGGCGCT
TGAATTCCGAGAATTGGACCTACTGGACAAGAAAGGGTTGGAGGGGCTGT
TCAAAGAGTATACGTTTGATGCTTGTATTCATTTTGCGGGCCTGAAGGCC
GTCGGTGAGAGTGTGAGCCAGCCAATGAGGTACTATCATAATAACATCGT
GGGTACACTGAATTTGTTAGAGGTTATGGATAAGCACAAATGCAAAAACT
TTGTATTCTCTTCCTCCGCCACCGTCTACGGGGATCCCGAAAAGCTGCCA
ATCACCGAAGACCAACGCCTGCAAGCCACCAATCCCTACGGCCGCACCAA
GCTCTTCATCGAAGAAATCCTCCGCGACCAGCATAAAGCAGACGCAGAAT
GGTCCATTCTCATCCTGCGGTATTTTAACCCCATCGGCGCTCACCCCTCA
GGGAGGATAGGCGAAGACCCTTTAGGTATCCCTAATAACCTCATGCCTTT
TGTCGCACAAGTCTGTGTCGGACGCCGTGATGCCCTCAGTGTGTTTGGTA
ATGACTATGCGACCCCAGACGGCACCGGAGTAAGAGATTATATTCACGTG
GTGGACCTCGCGGAAGGCCACGTGGCTGCTGTGGATAGGATGATGGAGGC
AAGGGCGGAGGGGGGAAAGAGTCTCGGCTGTGTGCCAGTCAACCTGGGGA
CGGGGGATGGCGTGAGTGTATTGGAGTTGGTGGCTGCTATGAGGGCGGCA
AGTGGGAAGGAAATTCCAACAAAAATGGCTGAGAGGAGGCCGGGGGATGT
GGCGTCTCTGTACACGGACCCCGGTTTTGCGAATCGGCTTCTGAAATGGA
AGGCGACAAGGGGGGTGAAGGAAATGTGTGAGGACACTTGGCGGTGGCAG
AGCCGGAATCCATTTGGGTATCGCAAGGCGCCTGAGGCGATGGGGACGTC
AAAATCGTAATGTGAAGGGATGGGGTAGGAAACATCAGAATTAGCTTATG
ACCTGAACTGTGGGGGCCAAAATGAAAGGATCCCTCACAACGCATGAAGA
CTCGGAGACAGAAACTGGGGGGAAAAAAGAAATAAAAAGATATCAGATGT
TTAAGTGCGACAGAGAAATGTAGTGAACGTTAAGCTTTCGAATTAAGGAA
CGTGTCATACTCGGAGTGGGGAGGTCTTGGGAACTTAACCGAGACGGACG
GCTCTGATTTGTGCTTCACCTGATTCTCATCCTTCCCTCTCACGATGCAC
CACACAGTTAACCAATGGCGACCCCTGACGAAAACTACGCAGAGGCAGAG
AACCACATGCTTCAAGTCCAGAAGCTCCTGAGGCAGCAAGCGCCCGTAGC
TGAAGTTCTCCGCGTGCTTAAACAGCTACCCGAGTGGGCTTCGTTGACGT
CCCAAGAACGCATGCACCATTTTTTGCTCTGCGATCCGGTGCATGACACC
TTTCCCTTGGCTCCTTGGTATCGTGCAAGCTTCATTCGTCACCTTTGCCT
CGAATTGGAAGAGGCGGTTGCAAAGGACGAGGAGGGCAGTGGAGAGGTGA
TCGAGCCCATCATGCGTGAATTGAATGTGCTGCTATGCCAACCCACACTC
AATGCTGAGCCCGGAGAATTGGCGGCGTATTTTATAACATTTGAATGCCC
TGTTGTAGTGCCGATGTACGTGGATATGGACTCTTCATCGAGTCTACACG
AGGAACCCGACGAGCAGCAGCTGCTGCAGCAGCGACCAAAAATTCTAGCA
ACCCGCATCGCCCCCAAAGAAAATGCCGTCGGACTGAAGCTATGGGAGGC
TTGCTACGTGCTTGCTGAGGCTTTGTGTAGCCATCCTAAGCTGTGTCGTG
GGCGAGATGTCATTGAATTAGGTGCGGGAGTAGGATTACTGGGTCTTGTG
GCTGCTTATTGCTTGGGCGCGGCAAGCGTCACTATGACAGATGTAGATGA
CAAGGTCCTGTTGTTTTTGCGGACCAATGTCGAATTTAATGCGGTAGCGA
CTGCTTCACTTCTCGCTGCTGATAGTCTTGTTGCTGTGCACGAGGAGAAG
GAGACGAAGGGCGAGGAAGCAGCAGCTGCAGCAGTAGTGCCTCTCATAGA
GGTGGCTGCTTTAGACTGGTCCAGGCCGGTCGAATATAAGGCATTGCTGG
ACCGTTCTACTCAACCGTCTTCCTGCACGTCGAGAAAGGACGTAAAGGAA
AGAGATCGAATTATTCTTGCAGCTGACTGTATTTACGATCGCGAAGTCAT
CCCTGCCTTCGTCGACGTCCTTGCCTATTCCCTCCAACCCCCCACCGGTG
GCAGCAGCAGGAAAACGACTGTGCTTGTCGCCTCCACGATGAGAGATCCC
GAGACCTACGCATATTTCGAGGAGGTGGTGAGAGAGAAAGGGTTGGTGAT
GGACGATGTCACCACGATGTTGGGAAGCCAGCCGCCTGACCCTGTCTCCT
CCCACGCGCCGTGGACGTTCTATTGCCCGAATCGCGCTGCGGTCCGAATA
TGTAGCTTTAGGTTACGTTCTGATGAGGATGAGGATAGCGACAAGTGAAT
CAAGAGAG back to topprotein sequence of jgi.p|Nanoce1779_2|596490 >mRNA_6833-protein ID=mRNA_6833-protein|Name=jgi.p|Nanoce1779_2|596490|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MGSTRCPYFMALILAFFAQSQAFAGQILVTGGAGYIGSHTCCELLKAGRR
IVVVDNLINSVQDSLERVKEITGCAPGALEFRELDLLDKKGLEGLFKEYT
FDACIHFAGLKAVGESVSQPMRYYHNNIVGTLNLLEVMDKHKCKNFVFSS
SATVYGDPEKLPITEDQRLQATNPYGRTKLFIEEILRDQHKADAEWSILI
LRYFNPIGAHPSGRIGEDPLGIPNNLMPFVAQVCVGRRDALSVFGNDYAT
PDGTGVRDYIHVVDLAEGHVAAVDRMMEARAEGGKSLGCVPVNLGTGDGV
SVLELVAAMRAASGKEIPTKMAERRPGDVASLYTDPGFANRLLKWKATRG
VKEMCEDTWRWQSRNPFGYRKAPEAMGTSKS* back to topmRNA from alignment at scaffold_17:216988..220105+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6833 ID=mRNA_6833|Name=jgi.p|Nanoce1779_2|596490|organism=Nannochloropsis oceanica|type=mRNA|length=3118bp|location=Sequence derived from alignment at scaffold_17:216988..220105+ (Nannochloropsis oceanica)
CATCAACAGCAATCATGGGGTCGACGCGATGTCCCTATTTCATGGCCTTG
ATACTGGCGTTTTTCGCTCAGTCCCAAGCTTTTGCTGGACAAATCCTTGT
GACAGGTACGTGTGGCAAGTAGTTGCGCCGTAATGGTTTTTTTTGTCATC
TTCATTTCCTTCCATCCATAGACGGTGACGTACGTCCCTACCTGTGTGTA
GAGCGGACCTCCTTCCCCCTCTCCCTGTCCCACCTTCATCCTTCTGCCCC
TCCCCGCTTGTTCGCCTGGAAATTTAGTACAGTGTTCTAGAGACGTCAAA
TTTATCTCTGTCTCCCCCCGAAAAAAGGCGGAGCGGGCTACATTGGCTCG
CACACATGTTGCGAGCTCCTCAAGGCTGGCCGTCGCATCGTCGTCGTCGA
CAACCTAATCAACAGTGTTCAAGACTCATTGGAACGTGTCAAGGAAATTA
CAGGGTGTGCCCCGGGGGCGCTTGAATTCCGAGAATTGGACCTACTGGAC
AAGAAAGGGTTGGAGGGGCTGTTCAAAGAGTATACGTTTGATGCTTGTAT
TCATTTTGCGGGCCTGAAGGCCGTCGGTGAGAGTGTGAGCCAGCCAATGA
GGTACTATCATAATAACATCGTGGGTACACTGAATTTGTTAGAGGTTATG
GATAAGCACAAGTAAGTACTTGTGGAAGGGAAGGAAGGGGAGGGATGGAG
GAAGCAAGGGAAGGGATGAGGCTAATTTAATATATTCGATGATTAGTGAA
CTAGATTCACATACCATCTCGTCTCCCCGCTACTCCTTTCTCACCCTAGA
TGCAAAAACTTTGTATTCTCTTCCTCCGCCACCGTCTACGGGGATCCCGA
AAAGCTGCCAATCACCGAAGACCAACGCCTGCAAGCCACCAATCCCTACG
GCCGCACCAAGCTCTTCATCGAAGAAATCCTCCGCGACCAGCATAAAGCA
GACGCAGAATGGTCCATTCTCATCCTGCGGTATTTTAACCCCATCGGCGC
TCACCCCTCAGGGAGGATAGGCGAAGACCCTTTAGGTATCCCTAATAACC
TCATGCCTTTTGTCGCACAAGTCTGTGTCGGACGCCGTGATGCCCTCAGT
GTGTTTGGTAATGACTATGCGACCCCAGACGGCACCGGAGTAAGAGATTA
TATTCACGTGGTGGACCTCGCGGAAGGCCACGTGGCTGCTGTGGATAGGA
TGATGGAGGCAAGGGCGGAGGGGGGAAAGAGTCTCGGCTGTGTGCCAGTC
AACCTGGGGACGGGGGATGGCGTGAGTGTATTGGAGTTGGTGGCTGCTAT
GAGGGCGGCAAGTGGGAAGGAAATTCCAACAAAAATGGCTGAGAGGAGGC
CGGGGGATGTGGCGTCTCTGTACACGGACCCCGGTTTTGCGAATCGGCTT
CTGAAATGGAAGGCGACAAGGGGGGTGAAGGAAATGTGTGAGGACACTTG
GCGGTGGCAGAGCCGGAATCCATTTGGGTATCGCAAGGCGCCTGAGGCGA
TGGGGACGTCAAAATCGTAATGTGAAGGGATGGGGTAGGAAACATCAGAA
TTAGCTTATGACCTGAACTGTGGGGGCCAAAATGAAAGGATCCCTCACAA
CGCATGAAGACTCGGAGACAGAAACTGGGGGGAAAAAAGAAATAAAAAGA
TATCAGATGTTTAAGTGCGACAGAGAAATGTAGTGAACGTTAAGCTTTCG
AATTAAGGAACGTGTCATACTCGGAGTGGGGAGGTCTTGGGAACTTAACC
GAGACGGACGGCTCTGATTTGTGCTTCACCTGATTCTCATCCTTCCCTCT
CACGATGCACCACACAGTTAACCAATGGCGACCCCTGACGAAAACTACGC
AGAGGCAGAGAACCACATGCTTCAAGTCCAGAAGCTCCTGAGGCAGCAAG
CGCCCGTAGCTGAAGTTCTCCGCGTGCTTAAACAGCTACCCGAGTGGGCT
TCGTTGACGTCCCAAGAACGCATGCACCATTTTTTGCTCTGCGATCCGGT
GCATGACACCTTTCCCTTGGCTCCTTGGTATCGTGCAAGCTTCATTCGTC
ACCTTTGCCTCGAATTGGAAGAGGCGGTTGCAAAGGACGAGGAGGGCAGT
GGAGAGGTGATCGAGCCCATCATGCGTGAATTGAATGTGCTGCTATGCCA
ACCCACACTCAATGCTGAGCCCGGAGAATTGGCGGCGTATTTTATAACAT
TTGAATGCCCTGTTGTAGTGCCGATGTACGTGGATATGGACTCTTCATCG
AGTCTACACGAGGAACCCGACGAGCAGCAGCTGCTGCAGCAGCGACCAAA
AATTCTAGCAACCCGCATCGCCCCCAAAGAAAATGCCGTCGGACTGAAGC
TATGGGAGGCTTGCTACGTGCTTGCTGAGGCTTTGTGTAGCCATCCTAAG
CTGTGTCGTGGGCGAGATGTCATTGAATTAGGTGCGGGAGTAGGATTACT
GGGTCTTGTGGCTGCTTATTGCTTGGGCGCGGCAAGCGTCACTATGACAG
ATGTAGATGACAAGGTCCTGTTGTTTTTGCGGACCAATGTCGAATTTAAT
GCGGTAGCGACTGCTTCACTTCTCGCTGCTGATAGTCTTGTTGCTGTGCA
CGAGGAGAAGGAGACGAAGGGCGAGGAAGCAGCAGCTGCAGCAGTAGTGC
CTCTCATAGAGGTGGCTGCTTTAGACTGGTCCAGGCCGGTCGAATATAAG
GCATTGCTGGACCGTTCTACTCAACCGTCTTCCTGCACGTCGAGAAAGGA
CGTAAAGGAAAGAGATCGAATTATTCTTGCAGCTGACTGTATTTACGATC
GCGAAGTCATCCCTGCCTTCGTCGACGTCCTTGCCTATTCCCTCCAACCC
CCCACCGGTGGCAGCAGCAGGAAAACGACTGTGCTTGTCGCCTCCACGAT
GAGAGATCCCGAGACCTACGCATATTTCGAGGAGGTGGTGAGAGAGAAAG
GGTTGGTGATGGACGATGTCACCACGATGTTGGGAAGCCAGCCGCCTGAC
CCTGTCTCCTCCCACGCGCCGTGGACGTTCTATTGCCCGAATCGCGCTGC
GGTCCGAATATGTAGCTTTAGGTTACGTTCTGATGAGGATGAGGATAGCG
ACAAGTGAATCAAGAGAG back to topCoding sequence (CDS) from alignment at scaffold_17:216988..220105+ >mRNA_6833 ID=mRNA_6833|Name=jgi.p|Nanoce1779_2|596490|organism=Nannochloropsis oceanica|type=CDS|length=3438bp|location=Sequence derived from alignment at scaffold_17:216988..220105+ (Nannochloropsis oceanica)
ATGGGGTCGACGCGATGTCCCTATTTCATGGCCTTGATACTGGCGTTTTT
CGCTCAGTCCCAAGCTTTTGCTGGACAAATCCTTGTGACAGGCGGAGCGG
GCTACATTGGCTCGCACACATGTTGCGAGCTCCTCAAGGCTGGCCGTCGC
ATCGTCGTCGTCGACAACCTAATCAACAGTGTTCAAGACTCATTGGAACG
TGTCAAGGAAATTACAGGGTGTGCCCCGGGGGCGCTTGAATTCCGAGAAT
TGGACCTACTGGACAAGAAAGGGTTGGAGGGGCTGTTCAAAGAGTATACG
TTTGATGCTTGTATTCATTTTGCGGGCCTGAAGGCCGTCGGTGAGAGTGT
GAGCCAGCCAATGAGGTACTATCATAATAACATCGTGGGTACACTGAATT
TGTTAGAGGTTATGGATAAGCACAAATGCAAAAACTTTGTATTCTCTTCC
TCCGCCACCGTCTACGGGGATCCCGAAAAGCTGCCAATCACCGAAGACCA
ACGCCTGCAAGCCACCAATCCCTACGGCCGCACCAAGCTCTTCATCGAAG
AAATCCTCCGCGACCAGCATAAAGCAGACGCAGAATGGTCCATTCTCATC
CTGCGGTATTTTAACCCCATCGGCGCTCACCCCTCAGGGAGGATAGGCGA
AGACCCTTTAGGTATCCCTAATAACCTCATGCCTTTTGTCGCACAAGTCT
GTGTCGGACGCCGTGATGCCCTCAGTGTGTTTGGTAATGACTATGCGACC
CCAGACGGCACCGGAGTAAGAGATTATATTCACGTGGTGGACCTCGCGGA
AGGCCACGTGGCTGCTGTGGATAGGATGATGGAGGCAAGGGCGGAGGGGG
GAAAGAGTCTCGGCTGTGTGCCAGTCAACCTGGGGACGGGGGATGGCGTG
AGTGTATTGGAGTTGGTGGCTGCTATGAGGGCGGCAAGTGGGAAGGAAAT
TCCAACAAAAATGGCTGAGAGGAGGCCGGGGGATGTGGCGTCTCTGTACA
CGGACCCCGGTTTTGCGAATCGGCTTCTGAAATGGAAGGCGACAAGGGGG
GTGAAGGAAATGTGTGAGGACACTTGGCGGTGGCAGAGCCGGAATCCATT
TGGGTATCGCAAGGCGCCTGAGGCGATGGGGACGTCAAAATCGTAAATGG
GGTCGACGCGATGTCCCTATTTCATGGCCTTGATACTGGCGTTTTTCGCT
CAGTCCCAAGCTTTTGCTGGACAAATCCTTGTGACAGGCGGAGCGGGCTA
CATTGGCTCGCACACATGTTGCGAGCTCCTCAAGGCTGGCCGTCGCATCG
TCGTCGTCGACAACCTAATCAACAGTGTTCAAGACTCATTGGAACGTGTC
AAGGAAATTACAGGGTGTGCCCCGGGGGCGCTTGAATTCCGAGAATTGGA
CCTACTGGACAAGAAAGGGTTGGAGGGGCTGTTCAAAGAGTATACGTTTG
ATGCTTGTATTCATTTTGCGGGCCTGAAGGCCGTCGGTGAGAGTGTGAGC
CAGCCAATGAGGTACTATCATAATAACATCGTGGGTACACTGAATTTGTT
AGAGGTTATGGATAAGCACAAATGCAAAAACTTTGTATTCTCTTCCTCCG
CCACCGTCTACGGGGATCCCGAAAAGCTGCCAATCACCGAAGACCAACGC
CTGCAAGCCACCAATCCCTACGGCCGCACCAAGCTCTTCATCGAAGAAAT
CCTCCGCGACCAGCATAAAGCAGACGCAGAATGGTCCATTCTCATCCTGC
GGTATTTTAACCCCATCGGCGCTCACCCCTCAGGGAGGATAGGCGAAGAC
CCTTTAGGTATCCCTAATAACCTCATGCCTTTTGTCGCACAAGTCTGTGT
CGGACGCCGTGATGCCCTCAGTGTGTTTGGTAATGACTATGCGACCCCAG
ACGGCACCGGAGTAAGAGATTATATTCACGTGGTGGACCTCGCGGAAGGC
CACGTGGCTGCTGTGGATAGGATGATGGAGGCAAGGGCGGAGGGGGGAAA
GAGTCTCGGCTGTGTGCCAGTCAACCTGGGGACGGGGGATGGCGTGAGTG
TATTGGAGTTGGTGGCTGCTATGAGGGCGGCAAGTGGGAAGGAAATTCCA
ACAAAAATGGCTGAGAGGAGGCCGGGGGATGTGGCGTCTCTGTACACGGA
CCCCGGTTTTGCGAATCGGCTTCTGAAATGGAAGGCGACAAGGGGGGTGA
AGGAAATGTGTGAGGACACTTGGCGGTGGCAGAGCCGGAATCCATTTGGG
TATCGCAAGGCGCCTGAGGCGATGGGGACGTCAAAATCGTAAATGGGGTC
GACGCGATGTCCCTATTTCATGGCCTTGATACTGGCGTTTTTCGCTCAGT
CCCAAGCTTTTGCTGGACAAATCCTTGTGACAGGCGGAGCGGGCTACATT
GGCTCGCACACATGTTGCGAGCTCCTCAAGGCTGGCCGTCGCATCGTCGT
CGTCGACAACCTAATCAACAGTGTTCAAGACTCATTGGAACGTGTCAAGG
AAATTACAGGGTGTGCCCCGGGGGCGCTTGAATTCCGAGAATTGGACCTA
CTGGACAAGAAAGGGTTGGAGGGGCTGTTCAAAGAGTATACGTTTGATGC
TTGTATTCATTTTGCGGGCCTGAAGGCCGTCGGTGAGAGTGTGAGCCAGC
CAATGAGGTACTATCATAATAACATCGTGGGTACACTGAATTTGTTAGAG
GTTATGGATAAGCACAAATGCAAAAACTTTGTATTCTCTTCCTCCGCCAC
CGTCTACGGGGATCCCGAAAAGCTGCCAATCACCGAAGACCAACGCCTGC
AAGCCACCAATCCCTACGGCCGCACCAAGCTCTTCATCGAAGAAATCCTC
CGCGACCAGCATAAAGCAGACGCAGAATGGTCCATTCTCATCCTGCGGTA
TTTTAACCCCATCGGCGCTCACCCCTCAGGGAGGATAGGCGAAGACCCTT
TAGGTATCCCTAATAACCTCATGCCTTTTGTCGCACAAGTCTGTGTCGGA
CGCCGTGATGCCCTCAGTGTGTTTGGTAATGACTATGCGACCCCAGACGG
CACCGGAGTAAGAGATTATATTCACGTGGTGGACCTCGCGGAAGGCCACG
TGGCTGCTGTGGATAGGATGATGGAGGCAAGGGCGGAGGGGGGAAAGAGT
CTCGGCTGTGTGCCAGTCAACCTGGGGACGGGGGATGGCGTGAGTGTATT
GGAGTTGGTGGCTGCTATGAGGGCGGCAAGTGGGAAGGAAATTCCAACAA
AAATGGCTGAGAGGAGGCCGGGGGATGTGGCGTCTCTGTACACGGACCCC
GGTTTTGCGAATCGGCTTCTGAAATGGAAGGCGACAAGGGGGGTGAAGGA
AATGTGTGAGGACACTTGGCGGTGGCAGAGCCGGAATCCATTTGGGTATC
GCAAGGCGCCTGAGGCGATGGGGACGTCAAAATCGTAA back to top
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