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Properties
Property Name | Value |
TranscriptId | 596569 |
Track | FilteredModels2 |
ProteinId | 596483 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_17 | supercontig | scaffold_17:214360..216503 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6832 ID=mRNA_6832|Name=jgi.p|Nanoce1779_2|596483|organism=Nannochloropsis oceanica|type=mRNA|length=1771bp ACAGCACTAGCTACCATGGGCGGAGGCATAATAACCAAGAGCCTTGGTCT TCTATACCTGCTCTCGTCGGCAGAGGTCTTTGCAGCGGCCCGTCGAATGG ACGCGACAACAGCCGGCGCGGCAATCAACAACATGCAGCAAGTCCACCAC CATCATGGTGAGTGCGTGCATGACCTTGTCAACGCACAGAATGTCGGTGC AGCAGCCGATTCCTCCACATCCCCTTTAGCGAGCTTGACGGAGGGTATCG GTGCCACTTGCAACGATGCAGCCACCAGCACAAGCACCTACAGCAGCGGC AGCAGCAGTAGCAATAAACACCACCATCACCATGGAGCCCGTAATTTGAT GACGCGTCGAGGAGGGCATGGAGGGCATTATGCCGGTGCTGCTGATGCAG GAGGGGGGAGTCTGACAACCCTAGGAATGTCCTTACCGTTTTTCAAGATT TTCCTGCAGCTGCTGCTGACGGGCTTGAATGTGGCGTGCTGGTTGGTCCC GATGAAGATCAAGAAGTTTCGGGAGAACCAGGAGTTGATTTCTCTGGCCA ATGCCTTCAGCGGGGGGGTGTTCTTGAGCTTGGCATTCGGGCACATGATT CCTCATTCGCTGGAAGGGTTTGAGGCCGCGGGCTACGCGCACAACGTCCC TTTCTTCGTAGTACTGACGGGGTACCTGATGATTTTTTTCATTGAGAAGA TAGCCTTCGACACGCACGCACTGATCGATCACCACGGGCATACACACGGG GATGATGCTGCCGCCGCTCCTACTGCCGCTCCTGCTCCTGTACATGCGGT TACGAATGGTGCAAGGAGCAACGGAGGAAAGATGATCCTCACAGCCCACG GAGGCCATGGAGGCAAGGTTCCTGTCCCTGCTGCCGCCACAACCGTCACA AGCATCATCACCCCTCCCTCCAGCCCTGCCCCCCAAGCCAGTGGTCGATC TGCTGTCATTCTGCTTCTTGCCCTTGCCGTGCACTCCATATTTGAAACCA TGGCGCTTGGCCTGTCTGATACCCCCCTTTCCGCCGGCCTTCTGGCCCTG AGCATCGCCCTGCATCAGCCCGCGGAATCCATCGCTTTATTGGTTGCGTT CCTCAAATCGGGCCTCAGCGAAGGACAGACTACTAGATATCTTTCTCTTT TCTCCACCGTGGGTATGATTGGTGTGGTTCTAGGCTTGGCCGTCTCCTCT TGGGCATCCGCCGTATGGGACTCGATTTTCGTAGCTCTGACTGCCGGGAC GTTTCTTTATGTGGGTTGTACTGAGATTGTGGCGGAAGAGTTCGAGGAGG AGCAGGGGAAGTGGAAAAAGTTTGGCGCGCTGCTTGCCGGGGTGGTAATT GTGGGGGCAATAACGACCGTGACCGAGGGCTGGGAGCATTAGGGCAGGGG GAGACCGGAGGCAGGGAGGAAGCGGGTGTAGGAGAGATTAGTGTAGATAT AGTCGAGAGGGATAGAAGAAGGAGATGAAGTGGAAGTGAAGAGGAAGAGA GCGACGAGGAGTTAAACGAAATATTCGGTGGCGTTTTCAGTGCGCCACTT CAGGTGTATCGTGCATGCGGGCGTGTGTGATATGCGATTAATTGTGGCCT TGGTATATCGTCTTTCTGTTCAGTTTTTCAGTCCTTTTTGTCACAGCAAC AAGTTTCCACAATAACCGCCAAAATCCAAGAGCCCAAAAGCCGTTTACCG AACTAGGTAAAATAAGAAGCAGAAGAGAGGAAAAGAAGAAACAAGTCGAA TCAACAACGAAAACCCGAAAA back to topprotein sequence of jgi.p|Nanoce1779_2|596483 >mRNA_6832-protein ID=mRNA_6832-protein|Name=jgi.p|Nanoce1779_2|596483|organism=Nannochloropsis oceanica|type=polypeptide|length=459bp MGGGIITKSLGLLYLLSSAEVFAAARRMDATTAGAAINNMQQVHHHHGEC VHDLVNAQNVGAAADSSTSPLASLTEGIGATCNDAATSTSTYSSGSSSSN KHHHHHGARNLMTRRGGHGGHYAGAADAGGGSLTTLGMSLPFFKIFLQLL LTGLNVACWLVPMKIKKFRENQELISLANAFSGGVFLSLAFGHMIPHSLE GFEAAGYAHNVPFFVVLTGYLMIFFIEKIAFDTHALIDHHGHTHGDDAAA APTAAPAPVHAVTNGARSNGGKMILTAHGGHGGKVPVPAAATTVTSIITP PSSPAPQASGRSAVILLLALAVHSIFETMALGLSDTPLSAGLLALSIALH QPAESIALLVAFLKSGLSEGQTTRYLSLFSTVGMIGVVLGLAVSSWASAV WDSIFVALTAGTFLYVGCTEIVAEEFEEEQGKWKKFGALLAGVVIVGAIT TVTEGWEH* back to topmRNA from alignment at scaffold_17:214360..216503- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6832 ID=mRNA_6832|Name=jgi.p|Nanoce1779_2|596483|organism=Nannochloropsis oceanica|type=mRNA|length=2144bp|location=Sequence derived from alignment at scaffold_17:214360..216503- (Nannochloropsis oceanica) ACAGCACTAGCTACCATGGGCGGAGGCATAATAACCAAGAGCCTTGGTCT
TCTATACCTGCTCTCGTCGGCAGAGGTCTTTGCAGCGGCCCGTCGAATGG
ACGCGACAACAGCCGGCGCGGCAATCAACAACATGCAGCAAGTCCACCAC
CATCATGTACGTACATAGACACAGATCGCAAGGGACGGGTCCGGTGTGAG
AAGATTGTGGAAGTGCTAGAGTCTTACTGCGATAACCGGTATTGATGGGA
GACAGTGTCGCTGTCATGCTTTTCATCCCCCTCTCTACCCCTTTCCCAGA
GGTCCTCCCCCCTCCGTCTTTCCCATATTTATCCGAAACACGGGAGGTTG
TAGATTCATCGAGCGGAGGCTTTTACGCTGTGGCCATATTTTATGAGATA
TCCGCATGCCCTTCGTGTCATAACGGGAGGACAAGCGCGGCAGTCGCATT
TATCCTCTCACGCAACACACATCTTAGTCCCTTACATTCTTCAACCCCCC
CCCTTGTTCCCCTCTCACCAAAACAACAGGGTGAGTGCGTGCATGACCTT
GTCAACGCACAGAATGTCGGTGCAGCAGCCGATTCCTCCACATCCCCTTT
AGCGAGCTTGACGGAGGGTATCGGTGCCACTTGCAACGATGCAGCCACCA
GCACAAGCACCTACAGCAGCGGCAGCAGCAGTAGCAATAAACACCACCAT
CACCATGGAGCCCGTAATTTGATGACGCGTCGAGGAGGGCATGGAGGGCA
TTATGCCGGTGCTGCTGATGCAGGAGGGGGGAGTCTGACAACCCTAGGAA
TGTCCTTACCGTTTTTCAAGATTTTCCTGCAGCTGCTGCTGACGGGCTTG
AATGTGGCGTGCTGGTTGGTCCCGATGAAGATCAAGAAGTTTCGGGAGAA
CCAGGAGTTGATTTCTCTGGCCAATGCCTTCAGCGGGGGGGTGTTCTTGA
GCTTGGCATTCGGGCACATGATTCCTCATTCGCTGGAAGGGTTTGAGGCC
GCGGGCTACGCGCACAACGTCCCTTTCTTCGTAGTACTGACGGGGTACCT
GATGATTTTTTTCATTGAGAAGATAGCCTTCGACACGCACGCACTGATCG
ATCACCACGGGCATACACACGGGGATGATGCTGCCGCCGCTCCTACTGCC
GCTCCTGCTCCTGTACATGCGGTTACGAATGGTGCAAGGAGCAACGGAGG
AAAGATGATCCTCACAGCCCACGGAGGCCATGGAGGCAAGGTTCCTGTCC
CTGCTGCCGCCACAACCGTCACAAGCATCATCACCCCTCCCTCCAGCCCT
GCCCCCCAAGCCAGTGGTCGATCTGCTGTCATTCTGCTTCTTGCCCTTGC
CGTGCACTCCATATTTGAAACCATGGCGCTTGGCCTGTCTGATACCCCCC
TTTCCGCCGGCCTTCTGGCCCTGAGCATCGCCCTGCATCAGCCCGCGGAA
TCCATCGCTTTATTGGTTGCGTTCCTCAAATCGGGCCTCAGCGAAGGACA
GACTACTAGATATCTTTCTCTTTTCTCCACCGTGGGTATGATTGGTGTGG
TTCTAGGCTTGGCCGTCTCCTCTTGGGCATCCGCCGTATGGGACTCGATT
TTCGTAGCTCTGACTGCCGGGACGTTTCTTTATGTGGGTTGTACTGAGAT
TGTGGCGGAAGAGTTCGAGGAGGAGCAGGGGAAGTGGAAAAAGTTTGGCG
CGCTGCTTGCCGGGGTGGTAATTGTGGGGGCAATAACGACCGTGACCGAG
GGCTGGGAGCATTAGGGCAGGGGGAGACCGGAGGCAGGGAGGAAGCGGGT
GTAGGAGAGATTAGTGTAGATATAGTCGAGAGGGATAGAAGAAGGAGATG
AAGTGGAAGTGAAGAGGAAGAGAGCGACGAGGAGTTAAACGAAATATTCG
GTGGCGTTTTCAGTGCGCCACTTCAGGTGTATCGTGCATGCGGGCGTGTG
TGATATGCGATTAATTGTGGCCTTGGTATATCGTCTTTCTGTTCAGTTTT
TCAGTCCTTTTTGTCACAGCAACAAGTTTCCACAATAACCGCCAAAATCC
AAGAGCCCAAAAGCCGTTTACCGAACTAGGTAAAATAAGAAGCAGAAGAG
AGGAAAAGAAGAAACAAGTCGAATCAACAACGAAAACCCGAAAA back to topCoding sequence (CDS) from alignment at scaffold_17:214360..216503- >mRNA_6832 ID=mRNA_6832|Name=jgi.p|Nanoce1779_2|596483|organism=Nannochloropsis oceanica|type=CDS|length=2754bp|location=Sequence derived from alignment at scaffold_17:214360..216503- (Nannochloropsis oceanica) GGTGAGTGCGTGCATGACCTTGTCAACGCACAGAATGTCGGTGCAGCAGC CGATTCCTCCACATCCCCTTTAGCGAGCTTGACGGAGGGTATCGGTGCCA CTTGCAACGATGCAGCCACCAGCACAAGCACCTACAGCAGCGGCAGCAGC AGTAGCAATAAACACCACCATCACCATGGAGCCCGTAATTTGATGACGCG TCGAGGAGGGCATGGAGGGCATTATGCCGGTGCTGCTGATGCAGGAGGGG GGAGTCTGACAACCCTAGGAATGTCCTTACCGTTTTTCAAGATTTTCCTG CAGCTGCTGCTGACGGGCTTGAATGTGGCGTGCTGGTTGGTCCCGATGAA GATCAAGAAGTTTCGGGAGAACCAGGAGTTGATTTCTCTGGCCAATGCCT TCAGCGGGGGGGTGTTCTTGAGCTTGGCATTCGGGCACATGATTCCTCAT TCGCTGGAAGGGTTTGAGGCCGCGGGCTACGCGCACAACGTCCCTTTCTT CGTAGTACTGACGGGGTACCTGATGATTTTTTTCATTGAGAAGATAGCCT TCGACACGCACGCACTGATCGATCACCACGGGCATACACACGGGGATGAT GCTGCCGCCGCTCCTACTGCCGCTCCTGCTCCTGTACATGCGGTTACGAA TGGTGCAAGGAGCAACGGAGGAAAGATGATCCTCACAGCCCACGGAGGCC ATGGAGGCAAGGTTCCTGTCCCTGCTGCCGCCACAACCGTCACAAGCATC ATCACCCCTCCCTCCAGCCCTGCCCCCCAAGCCAGTGGTCGATCTGCTGT CATTCTGCTTCTTGCCCTTGCCGTGCACTCCATATTTGAAACCATGGCGC TTGGCCTGTCTGATACCCCCCTTTCCGCCGGCCTTCTGGCCCTGAGCATC GCCCTGCATCAGCCCGCGGAATCCATCGCTTTATTGGTTGCGTTCCTCAA ATCGGGCCTCAGCGAAGGACAGACTACTAGATATCTTTCTCTTTTCTCCA CCGTGGGTATGATTGGTGTGGTTCTAGGCTTGGCCGTCTCCTCTTGGGCA TCCGCCGTATGGGACTCGATTTTCGTAGCTCTGACTGCCGGGACGTTTCT TTATGTGGGTTGTACTGAGATTGTGGCGGAAGAGTTCGAGGAGGAGCAGG GGAAGTGGAAAAAGTTTGGCGCGCTGCTTGCCGGGGTGGTAATTGTGGGG GCAATAACGACCGTGACCGAGGGCTGGGAGCATTAGATGGGCGGAGGCAT AATAACCAAGAGCCTTGGTCTTCTATACCTGCTCTCGTCGGCAGAGGTCT TTGCAGCGGCCCGTCGAATGGACGCGACAACAGCCGGCGCGGCAATCAAC AACATGCAGCAAGTCCACCACCATCATGGTGAGTGCGTGCATGACCTTGT CAACGCACAGAATGTCGGTGCAGCAGCCGATTCCTCCACATCCCCTTTAG CGAGCTTGACGGAGGGTATCGGTGCCACTTGCAACGATGCAGCCACCAGC ACAAGCACCTACAGCAGCGGCAGCAGCAGTAGCAATAAACACCACCATCA CCATGGAGCCCGTAATTTGATGACGCGTCGAGGAGGGCATGGAGGGCATT ATGCCGGTGCTGCTGATGCAGGAGGGGGGAGTCTGACAACCCTAGGAATG TCCTTACCGTTTTTCAAGATTTTCCTGCAGCTGCTGCTGACGGGCTTGAA TGTGGCGTGCTGGTTGGTCCCGATGAAGATCAAGAAGTTTCGGGAGAACC AGGAGTTGATTTCTCTGGCCAATGCCTTCAGCGGGGGGGTGTTCTTGAGC TTGGCATTCGGGCACATGATTCCTCATTCGCTGGAAGGGTTTGAGGCCGC GGGCTACGCGCACAACGTCCCTTTCTTCGTAGTACTGACGGGGTACCTGA TGATTTTTTTCATTGAGAAGATAGCCTTCGACACGCACGCACTGATCGAT CACCACGGGCATACACACGGGGATGATGCTGCCGCCGCTCCTACTGCCGC TCCTGCTCCTGTACATGCGGTTACGAATGGTGCAAGGAGCAACGGAGGAA AGATGATCCTCACAGCCCACGGAGGCCATGGAGGCAAGGTTCCTGTCCCT GCTGCCGCCACAACCGTCACAAGCATCATCACCCCTCCCTCCAGCCCTGC CCCCCAAGCCAGTGGTCGATCTGCTGTCATTCTGCTTCTTGCCCTTGCCG TGCACTCCATATTTGAAACCATGGCGCTTGGCCTGTCTGATACCCCCCTT TCCGCCGGCCTTCTGGCCCTGAGCATCGCCCTGCATCAGCCCGCGGAATC CATCGCTTTATTGGTTGCGTTCCTCAAATCGGGCCTCAGCGAAGGACAGA CTACTAGATATCTTTCTCTTTTCTCCACCGTGGGTATGATTGGTGTGGTT CTAGGCTTGGCCGTCTCCTCTTGGGCATCCGCCGTATGGGACTCGATTTT CGTAGCTCTGACTGCCGGGACGTTTCTTTATGTGGGTTGTACTGAGATTG TGGCGGAAGAGTTCGAGGAGGAGCAGGGGAAGTGGAAAAAGTTTGGCGCG CTGCTTGCCGGGGTGGTAATTGTGGGGGCAATAACGACCGTGACCGAGGG CTGGGAGCATTAGATGGGCGGAGGCATAATAACCAAGAGCCTTGGTCTTC TATACCTGCTCTCGTCGGCAGAGGTCTTTGCAGCGGCCCGTCGAATGGAC GCGACAACAGCCGGCGCGGCAATCAACAACATGCAGCAAGTCCACCACCA TCAT back to top
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