jgi.p|Nanoce1779_2|596483, mRNA_6832 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596483
Unique NamemRNA_6832
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1771
Alignment locationscaffold_17:214360..216503 -

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Properties
Property NameValue
TranscriptId596569
TrackFilteredModels2
ProteinId596483
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:214360..216503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596483gene_6832Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596483mRNA_6832-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6832CDS_6832Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6832 ID=mRNA_6832|Name=jgi.p|Nanoce1779_2|596483|organism=Nannochloropsis oceanica|type=mRNA|length=1771bp
ACAGCACTAGCTACCATGGGCGGAGGCATAATAACCAAGAGCCTTGGTCT
TCTATACCTGCTCTCGTCGGCAGAGGTCTTTGCAGCGGCCCGTCGAATGG
ACGCGACAACAGCCGGCGCGGCAATCAACAACATGCAGCAAGTCCACCAC
CATCATGGTGAGTGCGTGCATGACCTTGTCAACGCACAGAATGTCGGTGC
AGCAGCCGATTCCTCCACATCCCCTTTAGCGAGCTTGACGGAGGGTATCG
GTGCCACTTGCAACGATGCAGCCACCAGCACAAGCACCTACAGCAGCGGC
AGCAGCAGTAGCAATAAACACCACCATCACCATGGAGCCCGTAATTTGAT
GACGCGTCGAGGAGGGCATGGAGGGCATTATGCCGGTGCTGCTGATGCAG
GAGGGGGGAGTCTGACAACCCTAGGAATGTCCTTACCGTTTTTCAAGATT
TTCCTGCAGCTGCTGCTGACGGGCTTGAATGTGGCGTGCTGGTTGGTCCC
GATGAAGATCAAGAAGTTTCGGGAGAACCAGGAGTTGATTTCTCTGGCCA
ATGCCTTCAGCGGGGGGGTGTTCTTGAGCTTGGCATTCGGGCACATGATT
CCTCATTCGCTGGAAGGGTTTGAGGCCGCGGGCTACGCGCACAACGTCCC
TTTCTTCGTAGTACTGACGGGGTACCTGATGATTTTTTTCATTGAGAAGA
TAGCCTTCGACACGCACGCACTGATCGATCACCACGGGCATACACACGGG
GATGATGCTGCCGCCGCTCCTACTGCCGCTCCTGCTCCTGTACATGCGGT
TACGAATGGTGCAAGGAGCAACGGAGGAAAGATGATCCTCACAGCCCACG
GAGGCCATGGAGGCAAGGTTCCTGTCCCTGCTGCCGCCACAACCGTCACA
AGCATCATCACCCCTCCCTCCAGCCCTGCCCCCCAAGCCAGTGGTCGATC
TGCTGTCATTCTGCTTCTTGCCCTTGCCGTGCACTCCATATTTGAAACCA
TGGCGCTTGGCCTGTCTGATACCCCCCTTTCCGCCGGCCTTCTGGCCCTG
AGCATCGCCCTGCATCAGCCCGCGGAATCCATCGCTTTATTGGTTGCGTT
CCTCAAATCGGGCCTCAGCGAAGGACAGACTACTAGATATCTTTCTCTTT
TCTCCACCGTGGGTATGATTGGTGTGGTTCTAGGCTTGGCCGTCTCCTCT
TGGGCATCCGCCGTATGGGACTCGATTTTCGTAGCTCTGACTGCCGGGAC
GTTTCTTTATGTGGGTTGTACTGAGATTGTGGCGGAAGAGTTCGAGGAGG
AGCAGGGGAAGTGGAAAAAGTTTGGCGCGCTGCTTGCCGGGGTGGTAATT
GTGGGGGCAATAACGACCGTGACCGAGGGCTGGGAGCATTAGGGCAGGGG
GAGACCGGAGGCAGGGAGGAAGCGGGTGTAGGAGAGATTAGTGTAGATAT
AGTCGAGAGGGATAGAAGAAGGAGATGAAGTGGAAGTGAAGAGGAAGAGA
GCGACGAGGAGTTAAACGAAATATTCGGTGGCGTTTTCAGTGCGCCACTT
CAGGTGTATCGTGCATGCGGGCGTGTGTGATATGCGATTAATTGTGGCCT
TGGTATATCGTCTTTCTGTTCAGTTTTTCAGTCCTTTTTGTCACAGCAAC
AAGTTTCCACAATAACCGCCAAAATCCAAGAGCCCAAAAGCCGTTTACCG
AACTAGGTAAAATAAGAAGCAGAAGAGAGGAAAAGAAGAAACAAGTCGAA
TCAACAACGAAAACCCGAAAA
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protein sequence of jgi.p|Nanoce1779_2|596483

>mRNA_6832-protein ID=mRNA_6832-protein|Name=jgi.p|Nanoce1779_2|596483|organism=Nannochloropsis oceanica|type=polypeptide|length=459bp
MGGGIITKSLGLLYLLSSAEVFAAARRMDATTAGAAINNMQQVHHHHGEC
VHDLVNAQNVGAAADSSTSPLASLTEGIGATCNDAATSTSTYSSGSSSSN
KHHHHHGARNLMTRRGGHGGHYAGAADAGGGSLTTLGMSLPFFKIFLQLL
LTGLNVACWLVPMKIKKFRENQELISLANAFSGGVFLSLAFGHMIPHSLE
GFEAAGYAHNVPFFVVLTGYLMIFFIEKIAFDTHALIDHHGHTHGDDAAA
APTAAPAPVHAVTNGARSNGGKMILTAHGGHGGKVPVPAAATTVTSIITP
PSSPAPQASGRSAVILLLALAVHSIFETMALGLSDTPLSAGLLALSIALH
QPAESIALLVAFLKSGLSEGQTTRYLSLFSTVGMIGVVLGLAVSSWASAV
WDSIFVALTAGTFLYVGCTEIVAEEFEEEQGKWKKFGALLAGVVIVGAIT
TVTEGWEH*
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mRNA from alignment at scaffold_17:214360..216503-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6832 ID=mRNA_6832|Name=jgi.p|Nanoce1779_2|596483|organism=Nannochloropsis oceanica|type=mRNA|length=2144bp|location=Sequence derived from alignment at scaffold_17:214360..216503- (Nannochloropsis oceanica)
ACAGCACTAGCTACCATGGGCGGAGGCATAATAACCAAGAGCCTTGGTCT TCTATACCTGCTCTCGTCGGCAGAGGTCTTTGCAGCGGCCCGTCGAATGG ACGCGACAACAGCCGGCGCGGCAATCAACAACATGCAGCAAGTCCACCAC CATCATGTACGTACATAGACACAGATCGCAAGGGACGGGTCCGGTGTGAG AAGATTGTGGAAGTGCTAGAGTCTTACTGCGATAACCGGTATTGATGGGA GACAGTGTCGCTGTCATGCTTTTCATCCCCCTCTCTACCCCTTTCCCAGA GGTCCTCCCCCCTCCGTCTTTCCCATATTTATCCGAAACACGGGAGGTTG TAGATTCATCGAGCGGAGGCTTTTACGCTGTGGCCATATTTTATGAGATA TCCGCATGCCCTTCGTGTCATAACGGGAGGACAAGCGCGGCAGTCGCATT TATCCTCTCACGCAACACACATCTTAGTCCCTTACATTCTTCAACCCCCC CCCTTGTTCCCCTCTCACCAAAACAACAGGGTGAGTGCGTGCATGACCTT GTCAACGCACAGAATGTCGGTGCAGCAGCCGATTCCTCCACATCCCCTTT AGCGAGCTTGACGGAGGGTATCGGTGCCACTTGCAACGATGCAGCCACCA GCACAAGCACCTACAGCAGCGGCAGCAGCAGTAGCAATAAACACCACCAT CACCATGGAGCCCGTAATTTGATGACGCGTCGAGGAGGGCATGGAGGGCA TTATGCCGGTGCTGCTGATGCAGGAGGGGGGAGTCTGACAACCCTAGGAA TGTCCTTACCGTTTTTCAAGATTTTCCTGCAGCTGCTGCTGACGGGCTTG AATGTGGCGTGCTGGTTGGTCCCGATGAAGATCAAGAAGTTTCGGGAGAA CCAGGAGTTGATTTCTCTGGCCAATGCCTTCAGCGGGGGGGTGTTCTTGA GCTTGGCATTCGGGCACATGATTCCTCATTCGCTGGAAGGGTTTGAGGCC GCGGGCTACGCGCACAACGTCCCTTTCTTCGTAGTACTGACGGGGTACCT GATGATTTTTTTCATTGAGAAGATAGCCTTCGACACGCACGCACTGATCG ATCACCACGGGCATACACACGGGGATGATGCTGCCGCCGCTCCTACTGCC GCTCCTGCTCCTGTACATGCGGTTACGAATGGTGCAAGGAGCAACGGAGG AAAGATGATCCTCACAGCCCACGGAGGCCATGGAGGCAAGGTTCCTGTCC CTGCTGCCGCCACAACCGTCACAAGCATCATCACCCCTCCCTCCAGCCCT GCCCCCCAAGCCAGTGGTCGATCTGCTGTCATTCTGCTTCTTGCCCTTGC CGTGCACTCCATATTTGAAACCATGGCGCTTGGCCTGTCTGATACCCCCC TTTCCGCCGGCCTTCTGGCCCTGAGCATCGCCCTGCATCAGCCCGCGGAA TCCATCGCTTTATTGGTTGCGTTCCTCAAATCGGGCCTCAGCGAAGGACA GACTACTAGATATCTTTCTCTTTTCTCCACCGTGGGTATGATTGGTGTGG TTCTAGGCTTGGCCGTCTCCTCTTGGGCATCCGCCGTATGGGACTCGATT TTCGTAGCTCTGACTGCCGGGACGTTTCTTTATGTGGGTTGTACTGAGAT TGTGGCGGAAGAGTTCGAGGAGGAGCAGGGGAAGTGGAAAAAGTTTGGCG CGCTGCTTGCCGGGGTGGTAATTGTGGGGGCAATAACGACCGTGACCGAG GGCTGGGAGCATTAGGGCAGGGGGAGACCGGAGGCAGGGAGGAAGCGGGT GTAGGAGAGATTAGTGTAGATATAGTCGAGAGGGATAGAAGAAGGAGATG AAGTGGAAGTGAAGAGGAAGAGAGCGACGAGGAGTTAAACGAAATATTCG GTGGCGTTTTCAGTGCGCCACTTCAGGTGTATCGTGCATGCGGGCGTGTG TGATATGCGATTAATTGTGGCCTTGGTATATCGTCTTTCTGTTCAGTTTT TCAGTCCTTTTTGTCACAGCAACAAGTTTCCACAATAACCGCCAAAATCC AAGAGCCCAAAAGCCGTTTACCGAACTAGGTAAAATAAGAAGCAGAAGAG AGGAAAAGAAGAAACAAGTCGAATCAACAACGAAAACCCGAAAA
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Coding sequence (CDS) from alignment at scaffold_17:214360..216503-

>mRNA_6832 ID=mRNA_6832|Name=jgi.p|Nanoce1779_2|596483|organism=Nannochloropsis oceanica|type=CDS|length=2754bp|location=Sequence derived from alignment at scaffold_17:214360..216503- (Nannochloropsis oceanica)
GGTGAGTGCGTGCATGACCTTGTCAACGCACAGAATGTCGGTGCAGCAGC
CGATTCCTCCACATCCCCTTTAGCGAGCTTGACGGAGGGTATCGGTGCCA
CTTGCAACGATGCAGCCACCAGCACAAGCACCTACAGCAGCGGCAGCAGC
AGTAGCAATAAACACCACCATCACCATGGAGCCCGTAATTTGATGACGCG
TCGAGGAGGGCATGGAGGGCATTATGCCGGTGCTGCTGATGCAGGAGGGG
GGAGTCTGACAACCCTAGGAATGTCCTTACCGTTTTTCAAGATTTTCCTG
CAGCTGCTGCTGACGGGCTTGAATGTGGCGTGCTGGTTGGTCCCGATGAA
GATCAAGAAGTTTCGGGAGAACCAGGAGTTGATTTCTCTGGCCAATGCCT
TCAGCGGGGGGGTGTTCTTGAGCTTGGCATTCGGGCACATGATTCCTCAT
TCGCTGGAAGGGTTTGAGGCCGCGGGCTACGCGCACAACGTCCCTTTCTT
CGTAGTACTGACGGGGTACCTGATGATTTTTTTCATTGAGAAGATAGCCT
TCGACACGCACGCACTGATCGATCACCACGGGCATACACACGGGGATGAT
GCTGCCGCCGCTCCTACTGCCGCTCCTGCTCCTGTACATGCGGTTACGAA
TGGTGCAAGGAGCAACGGAGGAAAGATGATCCTCACAGCCCACGGAGGCC
ATGGAGGCAAGGTTCCTGTCCCTGCTGCCGCCACAACCGTCACAAGCATC
ATCACCCCTCCCTCCAGCCCTGCCCCCCAAGCCAGTGGTCGATCTGCTGT
CATTCTGCTTCTTGCCCTTGCCGTGCACTCCATATTTGAAACCATGGCGC
TTGGCCTGTCTGATACCCCCCTTTCCGCCGGCCTTCTGGCCCTGAGCATC
GCCCTGCATCAGCCCGCGGAATCCATCGCTTTATTGGTTGCGTTCCTCAA
ATCGGGCCTCAGCGAAGGACAGACTACTAGATATCTTTCTCTTTTCTCCA
CCGTGGGTATGATTGGTGTGGTTCTAGGCTTGGCCGTCTCCTCTTGGGCA
TCCGCCGTATGGGACTCGATTTTCGTAGCTCTGACTGCCGGGACGTTTCT
TTATGTGGGTTGTACTGAGATTGTGGCGGAAGAGTTCGAGGAGGAGCAGG
GGAAGTGGAAAAAGTTTGGCGCGCTGCTTGCCGGGGTGGTAATTGTGGGG
GCAATAACGACCGTGACCGAGGGCTGGGAGCATTAGATGGGCGGAGGCAT
AATAACCAAGAGCCTTGGTCTTCTATACCTGCTCTCGTCGGCAGAGGTCT
TTGCAGCGGCCCGTCGAATGGACGCGACAACAGCCGGCGCGGCAATCAAC
AACATGCAGCAAGTCCACCACCATCATGGTGAGTGCGTGCATGACCTTGT
CAACGCACAGAATGTCGGTGCAGCAGCCGATTCCTCCACATCCCCTTTAG
CGAGCTTGACGGAGGGTATCGGTGCCACTTGCAACGATGCAGCCACCAGC
ACAAGCACCTACAGCAGCGGCAGCAGCAGTAGCAATAAACACCACCATCA
CCATGGAGCCCGTAATTTGATGACGCGTCGAGGAGGGCATGGAGGGCATT
ATGCCGGTGCTGCTGATGCAGGAGGGGGGAGTCTGACAACCCTAGGAATG
TCCTTACCGTTTTTCAAGATTTTCCTGCAGCTGCTGCTGACGGGCTTGAA
TGTGGCGTGCTGGTTGGTCCCGATGAAGATCAAGAAGTTTCGGGAGAACC
AGGAGTTGATTTCTCTGGCCAATGCCTTCAGCGGGGGGGTGTTCTTGAGC
TTGGCATTCGGGCACATGATTCCTCATTCGCTGGAAGGGTTTGAGGCCGC
GGGCTACGCGCACAACGTCCCTTTCTTCGTAGTACTGACGGGGTACCTGA
TGATTTTTTTCATTGAGAAGATAGCCTTCGACACGCACGCACTGATCGAT
CACCACGGGCATACACACGGGGATGATGCTGCCGCCGCTCCTACTGCCGC
TCCTGCTCCTGTACATGCGGTTACGAATGGTGCAAGGAGCAACGGAGGAA
AGATGATCCTCACAGCCCACGGAGGCCATGGAGGCAAGGTTCCTGTCCCT
GCTGCCGCCACAACCGTCACAAGCATCATCACCCCTCCCTCCAGCCCTGC
CCCCCAAGCCAGTGGTCGATCTGCTGTCATTCTGCTTCTTGCCCTTGCCG
TGCACTCCATATTTGAAACCATGGCGCTTGGCCTGTCTGATACCCCCCTT
TCCGCCGGCCTTCTGGCCCTGAGCATCGCCCTGCATCAGCCCGCGGAATC
CATCGCTTTATTGGTTGCGTTCCTCAAATCGGGCCTCAGCGAAGGACAGA
CTACTAGATATCTTTCTCTTTTCTCCACCGTGGGTATGATTGGTGTGGTT
CTAGGCTTGGCCGTCTCCTCTTGGGCATCCGCCGTATGGGACTCGATTTT
CGTAGCTCTGACTGCCGGGACGTTTCTTTATGTGGGTTGTACTGAGATTG
TGGCGGAAGAGTTCGAGGAGGAGCAGGGGAAGTGGAAAAAGTTTGGCGCG
CTGCTTGCCGGGGTGGTAATTGTGGGGGCAATAACGACCGTGACCGAGGG
CTGGGAGCATTAGATGGGCGGAGGCATAATAACCAAGAGCCTTGGTCTTC
TATACCTGCTCTCGTCGGCAGAGGTCTTTGCAGCGGCCCGTCGAATGGAC
GCGACAACAGCCGGCGCGGCAATCAACAACATGCAGCAAGTCCACCACCA
TCAT
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Synonyms
Publications