jgi.p|Nanoce1779_2|596483, mRNA_6832 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596483
Unique Name	mRNA_6832
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1771
Alignment location	scaffold_17:214360..216503 -

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Properties


Property Name	Value
TranscriptId	596569
Track	FilteredModels2
ProteinId	596483

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:214360..216503 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596483	gene_6832	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596483	mRNA_6832-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6832	CDS_6832	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:214360..216503-
coding sequence from alignment at scaffold_17:214360..216503-

mRNA sequence

>mRNA_6832 ID=mRNA_6832|Name=jgi.p|Nanoce1779_2|596483|organism=Nannochloropsis oceanica|type=mRNA|length=1771bp
ACAGCACTAGCTACCATGGGCGGAGGCATAATAACCAAGAGCCTTGGTCT
TCTATACCTGCTCTCGTCGGCAGAGGTCTTTGCAGCGGCCCGTCGAATGG
ACGCGACAACAGCCGGCGCGGCAATCAACAACATGCAGCAAGTCCACCAC
CATCATGGTGAGTGCGTGCATGACCTTGTCAACGCACAGAATGTCGGTGC
AGCAGCCGATTCCTCCACATCCCCTTTAGCGAGCTTGACGGAGGGTATCG
GTGCCACTTGCAACGATGCAGCCACCAGCACAAGCACCTACAGCAGCGGC
AGCAGCAGTAGCAATAAACACCACCATCACCATGGAGCCCGTAATTTGAT
GACGCGTCGAGGAGGGCATGGAGGGCATTATGCCGGTGCTGCTGATGCAG
GAGGGGGGAGTCTGACAACCCTAGGAATGTCCTTACCGTTTTTCAAGATT
TTCCTGCAGCTGCTGCTGACGGGCTTGAATGTGGCGTGCTGGTTGGTCCC
GATGAAGATCAAGAAGTTTCGGGAGAACCAGGAGTTGATTTCTCTGGCCA
ATGCCTTCAGCGGGGGGGTGTTCTTGAGCTTGGCATTCGGGCACATGATT
CCTCATTCGCTGGAAGGGTTTGAGGCCGCGGGCTACGCGCACAACGTCCC
TTTCTTCGTAGTACTGACGGGGTACCTGATGATTTTTTTCATTGAGAAGA
TAGCCTTCGACACGCACGCACTGATCGATCACCACGGGCATACACACGGG
GATGATGCTGCCGCCGCTCCTACTGCCGCTCCTGCTCCTGTACATGCGGT
TACGAATGGTGCAAGGAGCAACGGAGGAAAGATGATCCTCACAGCCCACG
GAGGCCATGGAGGCAAGGTTCCTGTCCCTGCTGCCGCCACAACCGTCACA
AGCATCATCACCCCTCCCTCCAGCCCTGCCCCCCAAGCCAGTGGTCGATC
TGCTGTCATTCTGCTTCTTGCCCTTGCCGTGCACTCCATATTTGAAACCA
TGGCGCTTGGCCTGTCTGATACCCCCCTTTCCGCCGGCCTTCTGGCCCTG
AGCATCGCCCTGCATCAGCCCGCGGAATCCATCGCTTTATTGGTTGCGTT
CCTCAAATCGGGCCTCAGCGAAGGACAGACTACTAGATATCTTTCTCTTT
TCTCCACCGTGGGTATGATTGGTGTGGTTCTAGGCTTGGCCGTCTCCTCT
TGGGCATCCGCCGTATGGGACTCGATTTTCGTAGCTCTGACTGCCGGGAC
GTTTCTTTATGTGGGTTGTACTGAGATTGTGGCGGAAGAGTTCGAGGAGG
AGCAGGGGAAGTGGAAAAAGTTTGGCGCGCTGCTTGCCGGGGTGGTAATT
GTGGGGGCAATAACGACCGTGACCGAGGGCTGGGAGCATTAGGGCAGGGG
GAGACCGGAGGCAGGGAGGAAGCGGGTGTAGGAGAGATTAGTGTAGATAT
AGTCGAGAGGGATAGAAGAAGGAGATGAAGTGGAAGTGAAGAGGAAGAGA
GCGACGAGGAGTTAAACGAAATATTCGGTGGCGTTTTCAGTGCGCCACTT
CAGGTGTATCGTGCATGCGGGCGTGTGTGATATGCGATTAATTGTGGCCT
TGGTATATCGTCTTTCTGTTCAGTTTTTCAGTCCTTTTTGTCACAGCAAC
AAGTTTCCACAATAACCGCCAAAATCCAAGAGCCCAAAAGCCGTTTACCG
AACTAGGTAAAATAAGAAGCAGAAGAGAGGAAAAGAAGAAACAAGTCGAA
TCAACAACGAAAACCCGAAAA

protein sequence of jgi.p|Nanoce1779_2|596483

>mRNA_6832-protein ID=mRNA_6832-protein|Name=jgi.p|Nanoce1779_2|596483|organism=Nannochloropsis oceanica|type=polypeptide|length=459bp
MGGGIITKSLGLLYLLSSAEVFAAARRMDATTAGAAINNMQQVHHHHGEC
VHDLVNAQNVGAAADSSTSPLASLTEGIGATCNDAATSTSTYSSGSSSSN
KHHHHHGARNLMTRRGGHGGHYAGAADAGGGSLTTLGMSLPFFKIFLQLL
LTGLNVACWLVPMKIKKFRENQELISLANAFSGGVFLSLAFGHMIPHSLE
GFEAAGYAHNVPFFVVLTGYLMIFFIEKIAFDTHALIDHHGHTHGDDAAA
APTAAPAPVHAVTNGARSNGGKMILTAHGGHGGKVPVPAAATTVTSIITP
PSSPAPQASGRSAVILLLALAVHSIFETMALGLSDTPLSAGLLALSIALH
QPAESIALLVAFLKSGLSEGQTTRYLSLFSTVGMIGVVLGLAVSSWASAV
WDSIFVALTAGTFLYVGCTEIVAEEFEEEQGKWKKFGALLAGVVIVGAIT
TVTEGWEH*

mRNA from alignment at scaffold_17:214360..216503-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6832 ID=mRNA_6832|Name=jgi.p|Nanoce1779_2|596483|organism=Nannochloropsis oceanica|type=mRNA|length=2144bp|location=Sequence derived from alignment at scaffold_17:214360..216503- (Nannochloropsis oceanica)
ACAGCACTAGCTACCATGGGCGGAGGCATAATAACCAAGAGCCTTGGTCT
TCTATACCTGCTCTCGTCGGCAGAGGTCTTTGCAGCGGCCCGTCGAATGG
ACGCGACAACAGCCGGCGCGGCAATCAACAACATGCAGCAAGTCCACCAC
CATCATGTACGTACATAGACACAGATCGCAAGGGACGGGTCCGGTGTGAG
AAGATTGTGGAAGTGCTAGAGTCTTACTGCGATAACCGGTATTGATGGGA
GACAGTGTCGCTGTCATGCTTTTCATCCCCCTCTCTACCCCTTTCCCAGA
GGTCCTCCCCCCTCCGTCTTTCCCATATTTATCCGAAACACGGGAGGTTG
TAGATTCATCGAGCGGAGGCTTTTACGCTGTGGCCATATTTTATGAGATA
TCCGCATGCCCTTCGTGTCATAACGGGAGGACAAGCGCGGCAGTCGCATT
TATCCTCTCACGCAACACACATCTTAGTCCCTTACATTCTTCAACCCCCC
CCCTTGTTCCCCTCTCACCAAAACAACAGGGTGAGTGCGTGCATGACCTT
GTCAACGCACAGAATGTCGGTGCAGCAGCCGATTCCTCCACATCCCCTTT
AGCGAGCTTGACGGAGGGTATCGGTGCCACTTGCAACGATGCAGCCACCA
GCACAAGCACCTACAGCAGCGGCAGCAGCAGTAGCAATAAACACCACCAT
CACCATGGAGCCCGTAATTTGATGACGCGTCGAGGAGGGCATGGAGGGCA
TTATGCCGGTGCTGCTGATGCAGGAGGGGGGAGTCTGACAACCCTAGGAA
TGTCCTTACCGTTTTTCAAGATTTTCCTGCAGCTGCTGCTGACGGGCTTG
AATGTGGCGTGCTGGTTGGTCCCGATGAAGATCAAGAAGTTTCGGGAGAA
CCAGGAGTTGATTTCTCTGGCCAATGCCTTCAGCGGGGGGGTGTTCTTGA
GCTTGGCATTCGGGCACATGATTCCTCATTCGCTGGAAGGGTTTGAGGCC
GCGGGCTACGCGCACAACGTCCCTTTCTTCGTAGTACTGACGGGGTACCT
GATGATTTTTTTCATTGAGAAGATAGCCTTCGACACGCACGCACTGATCG
ATCACCACGGGCATACACACGGGGATGATGCTGCCGCCGCTCCTACTGCC
GCTCCTGCTCCTGTACATGCGGTTACGAATGGTGCAAGGAGCAACGGAGG
AAAGATGATCCTCACAGCCCACGGAGGCCATGGAGGCAAGGTTCCTGTCC
CTGCTGCCGCCACAACCGTCACAAGCATCATCACCCCTCCCTCCAGCCCT
GCCCCCCAAGCCAGTGGTCGATCTGCTGTCATTCTGCTTCTTGCCCTTGC
CGTGCACTCCATATTTGAAACCATGGCGCTTGGCCTGTCTGATACCCCCC
TTTCCGCCGGCCTTCTGGCCCTGAGCATCGCCCTGCATCAGCCCGCGGAA
TCCATCGCTTTATTGGTTGCGTTCCTCAAATCGGGCCTCAGCGAAGGACA
GACTACTAGATATCTTTCTCTTTTCTCCACCGTGGGTATGATTGGTGTGG
TTCTAGGCTTGGCCGTCTCCTCTTGGGCATCCGCCGTATGGGACTCGATT
TTCGTAGCTCTGACTGCCGGGACGTTTCTTTATGTGGGTTGTACTGAGAT
TGTGGCGGAAGAGTTCGAGGAGGAGCAGGGGAAGTGGAAAAAGTTTGGCG
CGCTGCTTGCCGGGGTGGTAATTGTGGGGGCAATAACGACCGTGACCGAG
GGCTGGGAGCATTAGGGCAGGGGGAGACCGGAGGCAGGGAGGAAGCGGGT
GTAGGAGAGATTAGTGTAGATATAGTCGAGAGGGATAGAAGAAGGAGATG
AAGTGGAAGTGAAGAGGAAGAGAGCGACGAGGAGTTAAACGAAATATTCG
GTGGCGTTTTCAGTGCGCCACTTCAGGTGTATCGTGCATGCGGGCGTGTG
TGATATGCGATTAATTGTGGCCTTGGTATATCGTCTTTCTGTTCAGTTTT
TCAGTCCTTTTTGTCACAGCAACAAGTTTCCACAATAACCGCCAAAATCC
AAGAGCCCAAAAGCCGTTTACCGAACTAGGTAAAATAAGAAGCAGAAGAG
AGGAAAAGAAGAAACAAGTCGAATCAACAACGAAAACCCGAAAA

Coding sequence (CDS) from alignment at scaffold_17:214360..216503-

>mRNA_6832 ID=mRNA_6832|Name=jgi.p|Nanoce1779_2|596483|organism=Nannochloropsis oceanica|type=CDS|length=2754bp|location=Sequence derived from alignment at scaffold_17:214360..216503- (Nannochloropsis oceanica)
GGTGAGTGCGTGCATGACCTTGTCAACGCACAGAATGTCGGTGCAGCAGC
CGATTCCTCCACATCCCCTTTAGCGAGCTTGACGGAGGGTATCGGTGCCA
CTTGCAACGATGCAGCCACCAGCACAAGCACCTACAGCAGCGGCAGCAGC
AGTAGCAATAAACACCACCATCACCATGGAGCCCGTAATTTGATGACGCG
TCGAGGAGGGCATGGAGGGCATTATGCCGGTGCTGCTGATGCAGGAGGGG
GGAGTCTGACAACCCTAGGAATGTCCTTACCGTTTTTCAAGATTTTCCTG
CAGCTGCTGCTGACGGGCTTGAATGTGGCGTGCTGGTTGGTCCCGATGAA
GATCAAGAAGTTTCGGGAGAACCAGGAGTTGATTTCTCTGGCCAATGCCT
TCAGCGGGGGGGTGTTCTTGAGCTTGGCATTCGGGCACATGATTCCTCAT
TCGCTGGAAGGGTTTGAGGCCGCGGGCTACGCGCACAACGTCCCTTTCTT
CGTAGTACTGACGGGGTACCTGATGATTTTTTTCATTGAGAAGATAGCCT
TCGACACGCACGCACTGATCGATCACCACGGGCATACACACGGGGATGAT
GCTGCCGCCGCTCCTACTGCCGCTCCTGCTCCTGTACATGCGGTTACGAA
TGGTGCAAGGAGCAACGGAGGAAAGATGATCCTCACAGCCCACGGAGGCC
ATGGAGGCAAGGTTCCTGTCCCTGCTGCCGCCACAACCGTCACAAGCATC
ATCACCCCTCCCTCCAGCCCTGCCCCCCAAGCCAGTGGTCGATCTGCTGT
CATTCTGCTTCTTGCCCTTGCCGTGCACTCCATATTTGAAACCATGGCGC
TTGGCCTGTCTGATACCCCCCTTTCCGCCGGCCTTCTGGCCCTGAGCATC
GCCCTGCATCAGCCCGCGGAATCCATCGCTTTATTGGTTGCGTTCCTCAA
ATCGGGCCTCAGCGAAGGACAGACTACTAGATATCTTTCTCTTTTCTCCA
CCGTGGGTATGATTGGTGTGGTTCTAGGCTTGGCCGTCTCCTCTTGGGCA
TCCGCCGTATGGGACTCGATTTTCGTAGCTCTGACTGCCGGGACGTTTCT
TTATGTGGGTTGTACTGAGATTGTGGCGGAAGAGTTCGAGGAGGAGCAGG
GGAAGTGGAAAAAGTTTGGCGCGCTGCTTGCCGGGGTGGTAATTGTGGGG
GCAATAACGACCGTGACCGAGGGCTGGGAGCATTAGATGGGCGGAGGCAT
AATAACCAAGAGCCTTGGTCTTCTATACCTGCTCTCGTCGGCAGAGGTCT
TTGCAGCGGCCCGTCGAATGGACGCGACAACAGCCGGCGCGGCAATCAAC
AACATGCAGCAAGTCCACCACCATCATGGTGAGTGCGTGCATGACCTTGT
CAACGCACAGAATGTCGGTGCAGCAGCCGATTCCTCCACATCCCCTTTAG
CGAGCTTGACGGAGGGTATCGGTGCCACTTGCAACGATGCAGCCACCAGC
ACAAGCACCTACAGCAGCGGCAGCAGCAGTAGCAATAAACACCACCATCA
CCATGGAGCCCGTAATTTGATGACGCGTCGAGGAGGGCATGGAGGGCATT
ATGCCGGTGCTGCTGATGCAGGAGGGGGGAGTCTGACAACCCTAGGAATG
TCCTTACCGTTTTTCAAGATTTTCCTGCAGCTGCTGCTGACGGGCTTGAA
TGTGGCGTGCTGGTTGGTCCCGATGAAGATCAAGAAGTTTCGGGAGAACC
AGGAGTTGATTTCTCTGGCCAATGCCTTCAGCGGGGGGGTGTTCTTGAGC
TTGGCATTCGGGCACATGATTCCTCATTCGCTGGAAGGGTTTGAGGCCGC
GGGCTACGCGCACAACGTCCCTTTCTTCGTAGTACTGACGGGGTACCTGA
TGATTTTTTTCATTGAGAAGATAGCCTTCGACACGCACGCACTGATCGAT
CACCACGGGCATACACACGGGGATGATGCTGCCGCCGCTCCTACTGCCGC
TCCTGCTCCTGTACATGCGGTTACGAATGGTGCAAGGAGCAACGGAGGAA
AGATGATCCTCACAGCCCACGGAGGCCATGGAGGCAAGGTTCCTGTCCCT
GCTGCCGCCACAACCGTCACAAGCATCATCACCCCTCCCTCCAGCCCTGC
CCCCCAAGCCAGTGGTCGATCTGCTGTCATTCTGCTTCTTGCCCTTGCCG
TGCACTCCATATTTGAAACCATGGCGCTTGGCCTGTCTGATACCCCCCTT
TCCGCCGGCCTTCTGGCCCTGAGCATCGCCCTGCATCAGCCCGCGGAATC
CATCGCTTTATTGGTTGCGTTCCTCAAATCGGGCCTCAGCGAAGGACAGA
CTACTAGATATCTTTCTCTTTTCTCCACCGTGGGTATGATTGGTGTGGTT
CTAGGCTTGGCCGTCTCCTCTTGGGCATCCGCCGTATGGGACTCGATTTT
CGTAGCTCTGACTGCCGGGACGTTTCTTTATGTGGGTTGTACTGAGATTG
TGGCGGAAGAGTTCGAGGAGGAGCAGGGGAAGTGGAAAAAGTTTGGCGCG
CTGCTTGCCGGGGTGGTAATTGTGGGGGCAATAACGACCGTGACCGAGGG
CTGGGAGCATTAGATGGGCGGAGGCATAATAACCAAGAGCCTTGGTCTTC
TATACCTGCTCTCGTCGGCAGAGGTCTTTGCAGCGGCCCGTCGAATGGAC
GCGACAACAGCCGGCGCGGCAATCAACAACATGCAGCAAGTCCACCACCA
TCAT

Synonyms

Publications