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Properties
| Property Name | Value |
|---|
| TranscriptId | 596565 |
| Track | FilteredModels2 |
| ProteinId | 596479 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:211171..214367 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6831 ID=mRNA_6831|Name=jgi.p|Nanoce1779_2|596479|organism=Nannochloropsis oceanica|type=mRNA|length=3064bp
AGCCACACACGCACAGGCCGTGTAATTCTCTTCGCCGCCGCCTGCAATTA
CTGGCTGCTGTCGGAAGCGGTCAAGTAAGGATTAAAGGCACCAAAGATTA
GACCTTATAACGACCACTTGCGTGGGGGCTTTTGGCACCTGAGTGCGCAG
GGGTGGGGAGGTGGTCACCTCGCCGTGAGGCAAGTTTAGCCCTTCTCCAC
GCCTTTTTTCCAAGATAAGTCCACCGATAAGGTCGTCGTACAAATGAAAG
TATTGAATGCAGCATTTTGATATCTAAAATTCGCAATTTACTGACCGGCG
TTCTCACGGCATAGATACTCCGTATCCCTCTTATCTTGTAAGACACAAGC
ACATCACAAACATGGCTCTAGAGTGGCTAACCCTGCACAAACTAGGCGGA
GACGAGGATTCTCCGCCCCTCTCCAACGTCTGGGCTGCTTGCGAGGAGAC
TCGAACATGCTTGGAAGGTGGGTTACTACGACGCAACGAGGACGGGTCCA
CTGCCGAGTCTCTACTAGCCTGGCTTCTCGAGACTGGCCACGTAAAAAGT
GTGCCTCAAGCCCGCCTGGGTGCATTTCATCTCTTGAGTGTGGCCATAGT
TCATTGCCCTGCTACTGTTTTGAGTGCCAATTTGGATAAACTTACGCAGC
TCCTCCGTTCGGGCATGAGTCCTGCCTCCTCTCCTGTGTGTCGTGTTTTT
GCGTGCCGGGCGGTGGGAGCGTTGGTGGACAAGGCATGGGCGGATGGAGG
AGAGATCGAACTCAAACAGCACGTGCAGCAAGATATCTTGTCTCGGCTAG
TCACATCATTGCTTGGATGTTGTACGGCGACGGATTCTGCTTCTTCTACT
CCTACTACTGCCAACGACGATGACGATGACGAGGGAAATACCTCATTTAC
GACACGCTCAACAGCTTTAGCAGCAAATATCGACCTCCGTGTGCATACCA
CTGCTCTACGTACCCTTGCCAAGTGTGCCCACACCGTTGGGATGGGCTTC
AAGTCCCACGCTGCTAAAATGGAAGCTGCAGCCTATGCGTCCCTCAACTC
CCCCTCCTCCGCCGACCCCTCCTTTAGGCAGGCGGCGATTGCGTGCTTGG
TGCGTGTGCCATTTACCTATTCAGATGGAGGACATTGGACAGCGATGCTT
TTGACGCTGCTGGGAGAAGCGGCGCGTACGCTTAAGCAGGTCTGGCCTGA
GGCGCATGTGCCTTCCTCCCTCCTTCAAATGAGTAGCAGCTGTAGCAGCA
GTAGCGGGAACAACAAAATGGCAGCTAGCAGTCATGTATCTACCCATAAA
ATGGGATTGTCACCATTTCCTCCTCTCCCGGAGAAGGGGGGAGGGGCTGT
TGTCAAAAGTTATGCTTTGGCAGCAAGAGCGCGCATTCAGGCATGTCTAG
AAGCAGTGGCTACCTTGCTTACCTTTGGGCATCACCACGGAAGCAGCCCT
GTCCTCCTTCCCTCCCTTCCTCTTCTTGGGATGTGCGAAGTCTTATTATC
TTCCATGCCTCGGGGAAACTCAAACCTAGGTGCTACGCCTGCTGCTCTTC
CTGCTACTGCTCTACAGGCGCTCCAACCTCTCCTCCGCTCCTTCGGGCTA
GACCTCCTTTCGTCCTATCTATCAGCTGCTAGTTCTTCGGCCCATCATTA
TTTATCCCGAATCGCTCATTTGGTTTTGCGTGCGTTGTCATGGCCAGTCG
CGCTGGGGTTTCGGTCGAGAGCATGTGCTTTGTTTTCGCAGGTTGTGCTG
GTGATGGGTGCGTCTGCTGCTCCTTCCCTAGTCGAGCCGGCATTGCTCCT
CCTCACACACCATGCGAGTCTCCATCTTTTTTCGACAGGTACGCCTTTGC
TGGTAAACAGTACCATGGCTGCTGCACCTGTTATTTCGGAGGGGGCAGGA
AGCAAGAAGAAGAAGGGAGGGGCGCTGACTAAGACGGCGACGGTGCGAGG
GAGGGAAGGAGGGATGATAGGGGAGGTGCTTGAGATGGGGACACAAGGAA
TAGAGGAGGTGGAGAGGGTAGGAATTGCGGTTTTTAAAGCGCTGGAGACG
GCGCTGCTGGGATGTGGACCTTTGTTGTCGATGGAGGGGCGATTGAGCCT
GGAGCAAGTGGTGGGGGCGGGGTTGAGTGATTTGAATCGCGGGGTGCCGC
GACCGGGTGCTGCTGTTTCTTCGATGTCCTTTGGAGGGATATCATGGGTA
CGGAGGAATGCTCCCCTCCGCGCGGCCTTTTTGGGGTTGGCAGCCCGTGC
ACTGTTGATCCCGCGGAGGGATGGGGCGGGCTCAGCATTGACTCCGTTGG
CGGCTCGCGTGTTCGGTGTGTTGTGTTTGGATTCGGACGAAGGCGTGGCA
CGTGCTGCTTTGCTTGGGCGGGCAGTAGCTGAGACGATTACGCACCCTCG
GGCCGCTCCTTTATTTATTCCGGCGGCGTTGTTGAAGTTGGACGAAGAGG
AGGACGTGCTTCGGGGACATGCGATCCGGAGTGCTGAATTGAGCTTCCCT
TGTGCTGCTGCTTCTGCGGGAGAAGGCGAACGGGGAGGAGGAAGAAAAGA
AGAGGGGGAAGCGGCGGTTGCTGGTACAAAAGAGAAGCCCTCCCTGCCAT
TCCCGTCGATGGATAAAACGCAGGTAGCGGCGGTGTGGTCGCAAAAGACA
AGCTCGGTCATCGCCTCCAGTGCTGTTGCTGCTGTTGCCTGCCCTGCACC
CGCCGCTATTTTATTAGCAGCAGAAGATAAGAGCAAGAAAGCGGGCTCAA
AGCGCGACTTAACATTAGCTCGTTCCTCCTCCCCATCTAACCGCACGGAC
GGTGGCAAGCGGCCTAAGTCTGCGAAAGCCGCCATGAAAACAACCGTTGC
TGTCACTGCTGCCGCAGCACAGAAGGAAGAGAAAGAGGGCGAAGAGGATG
AGGAGGATGACTTGCCGATGATTGTCGACGATGGAGGACCGGACGAGAGT
GAGGAAGACTAGGGTAGGGGATTGCAAAGTAGGAAAAGACAAAGGCACGT
GTGTACAGCGTACAGGTGACGGAAAACACACCCAATTCCAAAGTATGTAT
TTGTGATTTTCGGG back to topprotein sequence of jgi.p|Nanoce1779_2|596479 >mRNA_6831-protein ID=mRNA_6831-protein|Name=jgi.p|Nanoce1779_2|596479|organism=Nannochloropsis oceanica|type=polypeptide|length=867bp
MALEWLTLHKLGGDEDSPPLSNVWAACEETRTCLEGGLLRRNEDGSTAES
LLAWLLETGHVKSVPQARLGAFHLLSVAIVHCPATVLSANLDKLTQLLRS
GMSPASSPVCRVFACRAVGALVDKAWADGGEIELKQHVQQDILSRLVTSL
LGCCTATDSASSTPTTANDDDDDEGNTSFTTRSTALAANIDLRVHTTALR
TLAKCAHTVGMGFKSHAAKMEAAAYASLNSPSSADPSFRQAAIACLVRVP
FTYSDGGHWTAMLLTLLGEAARTLKQVWPEAHVPSSLLQMSSSCSSSSGN
NKMAASSHVSTHKMGLSPFPPLPEKGGGAVVKSYALAARARIQACLEAVA
TLLTFGHHHGSSPVLLPSLPLLGMCEVLLSSMPRGNSNLGATPAALPATA
LQALQPLLRSFGLDLLSSYLSAASSSAHHYLSRIAHLVLRALSWPVALGF
RSRACALFSQVVLVMGASAAPSLVEPALLLLTHHASLHLFSTGTPLLVNS
TMAAAPVISEGAGSKKKKGGALTKTATVRGREGGMIGEVLEMGTQGIEEV
ERVGIAVFKALETALLGCGPLLSMEGRLSLEQVVGAGLSDLNRGVPRPGA
AVSSMSFGGISWVRRNAPLRAAFLGLAARALLIPRRDGAGSALTPLAARV
FGVLCLDSDEGVARAALLGRAVAETITHPRAAPLFIPAALLKLDEEEDVL
RGHAIRSAELSFPCAAASAGEGERGGGRKEEGEAAVAGTKEKPSLPFPSM
DKTQVAAVWSQKTSSVIASSAVAAVACPAPAAILLAAEDKSKKAGSKRDL
TLARSSSPSNRTDGGKRPKSAKAAMKTTVAVTAAAAQKEEKEGEEDEEDD
LPMIVDDGGPDESEED* back to topmRNA from alignment at scaffold_17:211171..214367+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6831 ID=mRNA_6831|Name=jgi.p|Nanoce1779_2|596479|organism=Nannochloropsis oceanica|type=mRNA|length=3197bp|location=Sequence derived from alignment at scaffold_17:211171..214367+ (Nannochloropsis oceanica)
AGCCACACACGCACAGGCCGTGTAATTCTCTTCGCCGCCGCCTGCAATTA
CTGGCTGCTGTCGGAAGCGGTCAAGTAAGGATTAAAGGCACCAAAGGTAA
AGCTCGACCTCCCCTAGTTAGATTCTCCCCTCCCCCATTTGCCTACCCTT
TTCCAATGAATACCCAAGGCTTTTTGTCAAGTCCGTGATGCGAATGATCC
ACATGCATTGGGGGCCGATGCCTTGGAAGATTAGACCTTATAACGACCAC
TTGCGTGGGGGCTTTTGGCACCTGAGTGCGCAGGGGTGGGGAGGTGGTCA
CCTCGCCGTGAGGCAAGTTTAGCCCTTCTCCACGCCTTTTTTCCAAGATA
AGTCCACCGATAAGGTCGTCGTACAAATGAAAGTATTGAATGCAGCATTT
TGATATCTAAAATTCGCAATTTACTGACCGGCGTTCTCACGGCATAGATA
CTCCGTATCCCTCTTATCTTGTAAGACACAAGCACATCACAAACATGGCT
CTAGAGTGGCTAACCCTGCACAAACTAGGCGGAGACGAGGATTCTCCGCC
CCTCTCCAACGTCTGGGCTGCTTGCGAGGAGACTCGAACATGCTTGGAAG
GTGGGTTACTACGACGCAACGAGGACGGGTCCACTGCCGAGTCTCTACTA
GCCTGGCTTCTCGAGACTGGCCACGTAAAAAGTGTGCCTCAAGCCCGCCT
GGGTGCATTTCATCTCTTGAGTGTGGCCATAGTTCATTGCCCTGCTACTG
TTTTGAGTGCCAATTTGGATAAACTTACGCAGCTCCTCCGTTCGGGCATG
AGTCCTGCCTCCTCTCCTGTGTGTCGTGTTTTTGCGTGCCGGGCGGTGGG
AGCGTTGGTGGACAAGGCATGGGCGGATGGAGGAGAGATCGAACTCAAAC
AGCACGTGCAGCAAGATATCTTGTCTCGGCTAGTCACATCATTGCTTGGA
TGTTGTACGGCGACGGATTCTGCTTCTTCTACTCCTACTACTGCCAACGA
CGATGACGATGACGAGGGAAATACCTCATTTACGACACGCTCAACAGCTT
TAGCAGCAAATATCGACCTCCGTGTGCATACCACTGCTCTACGTACCCTT
GCCAAGTGTGCCCACACCGTTGGGATGGGCTTCAAGTCCCACGCTGCTAA
AATGGAAGCTGCAGCCTATGCGTCCCTCAACTCCCCCTCCTCCGCCGACC
CCTCCTTTAGGCAGGCGGCGATTGCGTGCTTGGTGCGTGTGCCATTTACC
TATTCAGATGGAGGACATTGGACAGCGATGCTTTTGACGCTGCTGGGAGA
AGCGGCGCGTACGCTTAAGCAGGTCTGGCCTGAGGCGCATGTGCCTTCCT
CCCTCCTTCAAATGAGTAGCAGCTGTAGCAGCAGTAGCGGGAACAACAAA
ATGGCAGCTAGCAGTCATGTATCTACCCATAAAATGGGATTGTCACCATT
TCCTCCTCTCCCGGAGAAGGGGGGAGGGGCTGTTGTCAAAAGTTATGCTT
TGGCAGCAAGAGCGCGCATTCAGGCATGTCTAGAAGCAGTGGCTACCTTG
CTTACCTTTGGGCATCACCACGGAAGCAGCCCTGTCCTCCTTCCCTCCCT
TCCTCTTCTTGGGATGTGCGAAGTCTTATTATCTTCCATGCCTCGGGGAA
ACTCAAACCTAGGTGCTACGCCTGCTGCTCTTCCTGCTACTGCTCTACAG
GCGCTCCAACCTCTCCTCCGCTCCTTCGGGCTAGACCTCCTTTCGTCCTA
TCTATCAGCTGCTAGTTCTTCGGCCCATCATTATTTATCCCGAATCGCTC
ATTTGGTTTTGCGTGCGTTGTCATGGCCAGTCGCGCTGGGGTTTCGGTCG
AGAGCATGTGCTTTGTTTTCGCAGGTTGTGCTGGTGATGGGTGCGTCTGC
TGCTCCTTCCCTAGTCGAGCCGGCATTGCTCCTCCTCACACACCATGCGA
GTCTCCATCTTTTTTCGACAGGTACGCCTTTGCTGGTAAACAGTACCATG
GCTGCTGCACCTGTTATTTCGGAGGGGGCAGGAAGCAAGAAGAAGAAGGG
AGGGGCGCTGACTAAGACGGCGACGGTGCGAGGGAGGGAAGGAGGGATGA
TAGGGGAGGTGCTTGAGATGGGGACACAAGGAATAGAGGAGGTGGAGAGG
GTAGGAATTGCGGTTTTTAAAGCGCTGGAGACGGCGCTGCTGGGATGTGG
ACCTTTGTTGTCGATGGAGGGGCGATTGAGCCTGGAGCAAGTGGTGGGGG
CGGGGTTGAGTGATTTGAATCGCGGGGTGCCGCGACCGGGTGCTGCTGTT
TCTTCGATGTCCTTTGGAGGGATATCATGGGTACGGAGGAATGCTCCCCT
CCGCGCGGCCTTTTTGGGGTTGGCAGCCCGTGCACTGTTGATCCCGCGGA
GGGATGGGGCGGGCTCAGCATTGACTCCGTTGGCGGCTCGCGTGTTCGGT
GTGTTGTGTTTGGATTCGGACGAAGGCGTGGCACGTGCTGCTTTGCTTGG
GCGGGCAGTAGCTGAGACGATTACGCACCCTCGGGCCGCTCCTTTATTTA
TTCCGGCGGCGTTGTTGAAGTTGGACGAAGAGGAGGACGTGCTTCGGGGA
CATGCGATCCGGAGTGCTGAATTGAGCTTCCCTTGTGCTGCTGCTTCTGC
GGGAGAAGGCGAACGGGGAGGAGGAAGAAAAGAAGAGGGGGAAGCGGCGG
TTGCTGGTACAAAAGAGAAGCCCTCCCTGCCATTCCCGTCGATGGATAAA
ACGCAGGTAGCGGCGGTGTGGTCGCAAAAGACAAGCTCGGTCATCGCCTC
CAGTGCTGTTGCTGCTGTTGCCTGCCCTGCACCCGCCGCTATTTTATTAG
CAGCAGAAGATAAGAGCAAGAAAGCGGGCTCAAAGCGCGACTTAACATTA
GCTCGTTCCTCCTCCCCATCTAACCGCACGGACGGTGGCAAGCGGCCTAA
GTCTGCGAAAGCCGCCATGAAAACAACCGTTGCTGTCACTGCTGCCGCAG
CACAGAAGGAAGAGAAAGAGGGCGAAGAGGATGAGGAGGATGACTTGCCG
ATGATTGTCGACGATGGAGGACCGGACGAGAGTGAGGAAGACTAGGGTAG
GGGATTGCAAAGTAGGAAAAGACAAAGGCACGTGTGTACAGCGTACAGGT
GACGGAAAACACACCCAATTCCAAAGTATGTATTTGTGATTTTCGGG back to topCoding sequence (CDS) from alignment at scaffold_17:211171..214367+ >mRNA_6831 ID=mRNA_6831|Name=jgi.p|Nanoce1779_2|596479|organism=Nannochloropsis oceanica|type=CDS|length=2601bp|location=Sequence derived from alignment at scaffold_17:211171..214367+ (Nannochloropsis oceanica)
ATGGCTCTAGAGTGGCTAACCCTGCACAAACTAGGCGGAGACGAGGATTC
TCCGCCCCTCTCCAACGTCTGGGCTGCTTGCGAGGAGACTCGAACATGCT
TGGAAGGTGGGTTACTACGACGCAACGAGGACGGGTCCACTGCCGAGTCT
CTACTAGCCTGGCTTCTCGAGACTGGCCACGTAAAAAGTGTGCCTCAAGC
CCGCCTGGGTGCATTTCATCTCTTGAGTGTGGCCATAGTTCATTGCCCTG
CTACTGTTTTGAGTGCCAATTTGGATAAACTTACGCAGCTCCTCCGTTCG
GGCATGAGTCCTGCCTCCTCTCCTGTGTGTCGTGTTTTTGCGTGCCGGGC
GGTGGGAGCGTTGGTGGACAAGGCATGGGCGGATGGAGGAGAGATCGAAC
TCAAACAGCACGTGCAGCAAGATATCTTGTCTCGGCTAGTCACATCATTG
CTTGGATGTTGTACGGCGACGGATTCTGCTTCTTCTACTCCTACTACTGC
CAACGACGATGACGATGACGAGGGAAATACCTCATTTACGACACGCTCAA
CAGCTTTAGCAGCAAATATCGACCTCCGTGTGCATACCACTGCTCTACGT
ACCCTTGCCAAGTGTGCCCACACCGTTGGGATGGGCTTCAAGTCCCACGC
TGCTAAAATGGAAGCTGCAGCCTATGCGTCCCTCAACTCCCCCTCCTCCG
CCGACCCCTCCTTTAGGCAGGCGGCGATTGCGTGCTTGGTGCGTGTGCCA
TTTACCTATTCAGATGGAGGACATTGGACAGCGATGCTTTTGACGCTGCT
GGGAGAAGCGGCGCGTACGCTTAAGCAGGTCTGGCCTGAGGCGCATGTGC
CTTCCTCCCTCCTTCAAATGAGTAGCAGCTGTAGCAGCAGTAGCGGGAAC
AACAAAATGGCAGCTAGCAGTCATGTATCTACCCATAAAATGGGATTGTC
ACCATTTCCTCCTCTCCCGGAGAAGGGGGGAGGGGCTGTTGTCAAAAGTT
ATGCTTTGGCAGCAAGAGCGCGCATTCAGGCATGTCTAGAAGCAGTGGCT
ACCTTGCTTACCTTTGGGCATCACCACGGAAGCAGCCCTGTCCTCCTTCC
CTCCCTTCCTCTTCTTGGGATGTGCGAAGTCTTATTATCTTCCATGCCTC
GGGGAAACTCAAACCTAGGTGCTACGCCTGCTGCTCTTCCTGCTACTGCT
CTACAGGCGCTCCAACCTCTCCTCCGCTCCTTCGGGCTAGACCTCCTTTC
GTCCTATCTATCAGCTGCTAGTTCTTCGGCCCATCATTATTTATCCCGAA
TCGCTCATTTGGTTTTGCGTGCGTTGTCATGGCCAGTCGCGCTGGGGTTT
CGGTCGAGAGCATGTGCTTTGTTTTCGCAGGTTGTGCTGGTGATGGGTGC
GTCTGCTGCTCCTTCCCTAGTCGAGCCGGCATTGCTCCTCCTCACACACC
ATGCGAGTCTCCATCTTTTTTCGACAGGTACGCCTTTGCTGGTAAACAGT
ACCATGGCTGCTGCACCTGTTATTTCGGAGGGGGCAGGAAGCAAGAAGAA
GAAGGGAGGGGCGCTGACTAAGACGGCGACGGTGCGAGGGAGGGAAGGAG
GGATGATAGGGGAGGTGCTTGAGATGGGGACACAAGGAATAGAGGAGGTG
GAGAGGGTAGGAATTGCGGTTTTTAAAGCGCTGGAGACGGCGCTGCTGGG
ATGTGGACCTTTGTTGTCGATGGAGGGGCGATTGAGCCTGGAGCAAGTGG
TGGGGGCGGGGTTGAGTGATTTGAATCGCGGGGTGCCGCGACCGGGTGCT
GCTGTTTCTTCGATGTCCTTTGGAGGGATATCATGGGTACGGAGGAATGC
TCCCCTCCGCGCGGCCTTTTTGGGGTTGGCAGCCCGTGCACTGTTGATCC
CGCGGAGGGATGGGGCGGGCTCAGCATTGACTCCGTTGGCGGCTCGCGTG
TTCGGTGTGTTGTGTTTGGATTCGGACGAAGGCGTGGCACGTGCTGCTTT
GCTTGGGCGGGCAGTAGCTGAGACGATTACGCACCCTCGGGCCGCTCCTT
TATTTATTCCGGCGGCGTTGTTGAAGTTGGACGAAGAGGAGGACGTGCTT
CGGGGACATGCGATCCGGAGTGCTGAATTGAGCTTCCCTTGTGCTGCTGC
TTCTGCGGGAGAAGGCGAACGGGGAGGAGGAAGAAAAGAAGAGGGGGAAG
CGGCGGTTGCTGGTACAAAAGAGAAGCCCTCCCTGCCATTCCCGTCGATG
GATAAAACGCAGGTAGCGGCGGTGTGGTCGCAAAAGACAAGCTCGGTCAT
CGCCTCCAGTGCTGTTGCTGCTGTTGCCTGCCCTGCACCCGCCGCTATTT
TATTAGCAGCAGAAGATAAGAGCAAGAAAGCGGGCTCAAAGCGCGACTTA
ACATTAGCTCGTTCCTCCTCCCCATCTAACCGCACGGACGGTGGCAAGCG
GCCTAAGTCTGCGAAAGCCGCCATGAAAACAACCGTTGCTGTCACTGCTG
CCGCAGCACAGAAGGAAGAGAAAGAGGGCGAAGAGGATGAGGAGGATGAC
TTGCCGATGATTGTCGACGATGGAGGACCGGACGAGAGTGAGGAAGACTA
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