jgi.p|Nanoce1779_2|522880, mRNA_683 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|522880
Unique NamemRNA_683
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length450
Alignment locationscaffold_2:184837..185286 +

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Properties
Property NameValue
TranscriptId522966
TrackFilteredModels2
ProteinId522880
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:184837..185286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522880gene_683Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522880mRNA_683-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_683CDS_683Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_683 ID=mRNA_683|Name=jgi.p|Nanoce1779_2|522880|organism=Nannochloropsis oceanica|type=mRNA|length=450bp
ATGGTAGACGTGGAAGTGGTAGGCACAGGGGAGGTCTGGCAAGGTCGGGA
GGCGAAGGCCCTGGGGTTGGTTGATGAGGTGATGACCAGCGAGGAGTATT
TGGCGTGGAGACTTCTCACTCACGATGTGATCAAAGTGACGCCTGCTCCG
GAGGGGAGGAGGTTTCCCGGCTTCTTGCTGCCTGGACGAGGGGGAGGAAG
GGATGGAGGAGGAGCGGGGATGCCTATTGGTGCGAGTTTGGGCTTGGTGA
GGGAGTGCGTGAAGTGGGTTAAGAGGGGTAGGCGGAGGAGGAGGGTGGGG
ATGGGGGGGAAGGTGGCCGTGGAGGGGAGGGAGGAGGAGGAGGAGGAGGA
CGAGGAGGAGGAGGGGGCGAAAAGGGCTATAGTGGGGGATTTGGTGGGAC
GTGCGGTATCGTGGTTGATGGGGCGGCCGCAGCCTCCGATATTTTGTTAA
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protein sequence of jgi.p|Nanoce1779_2|522880

>mRNA_683-protein ID=mRNA_683-protein|Name=jgi.p|Nanoce1779_2|522880|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MVDVEVVGTGEVWQGREAKALGLVDEVMTSEEYLAWRLLTHDVIKVTPAP
EGRRFPGFLLPGRGGGRDGGGAGMPIGASLGLVRECVKWVKRGRRRRRVG
MGGKVAVEGREEEEEEDEEEEGAKRAIVGDLVGRAVSWLMGRPQPPIFC*
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mRNA from alignment at scaffold_2:184837..185286+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_683 ID=mRNA_683|Name=jgi.p|Nanoce1779_2|522880|organism=Nannochloropsis oceanica|type=mRNA|length=450bp|location=Sequence derived from alignment at scaffold_2:184837..185286+ (Nannochloropsis oceanica)
ATGGTAGACGTGGAAGTGGTAGGCACAGGGGAGGTCTGGCAAGGTCGGGA
GGCGAAGGCCCTGGGGTTGGTTGATGAGGTGATGACCAGCGAGGAGTATT
TGGCGTGGAGACTTCTCACTCACGATGTGATCAAAGTGACGCCTGCTCCG
GAGGGGAGGAGGTTTCCCGGCTTCTTGCTGCCTGGACGAGGGGGAGGAAG
GGATGGAGGAGGAGCGGGGATGCCTATTGGTGCGAGTTTGGGCTTGGTGA
GGGAGTGCGTGAAGTGGGTTAAGAGGGGTAGGCGGAGGAGGAGGGTGGGG
ATGGGGGGGAAGGTGGCCGTGGAGGGGAGGGAGGAGGAGGAGGAGGAGGA
CGAGGAGGAGGAGGGGGCGAAAAGGGCTATAGTGGGGGATTTGGTGGGAC
GTGCGGTATCGTGGTTGATGGGGCGGCCGCAGCCTCCGATATTTTGTTAA
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Coding sequence (CDS) from alignment at scaffold_2:184837..185286+

>mRNA_683 ID=mRNA_683|Name=jgi.p|Nanoce1779_2|522880|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_2:184837..185286+ (Nannochloropsis oceanica)
ATGGTAGACGTGGAAGTGGTAGGCACAGGGGAGGTCTGGCAAGGTCGGGA
GGCGAAGGCCCTGGGGTTGGTTGATGAGGTGATGACCAGCGAGGAGTATT
TGGCGTGGAGACTTCTCACTCACGATGTGATCAAAGTGACGCCTGCTCCG
GAGGGGAGGAGGTTTCCCGGCTTCTTGCTGCCTGGACGAGGGGGAGGAAG
GGATGGAGGAGGAGCGGGGATGCCTATTGGTGCGAGTTTGGGCTTGGTGA
GGGAGTGCGTGAAGTGGGTTAAGAGGGGTAGGCGGAGGAGGAGGGTGGGG
ATGGGGGGGAAGGTGGCCGTGGAGGGGAGGGAGGAGGAGGAGGAGGAGGA
CGAGGAGGAGGAGGGGGCGAAAAGGGCTATAGTGGGGGATTTGGTGGGAC
GTGCGGTATCGTGGTTGATGGGGCGGCCGCAGCCTCCGATATTTTGTTAA
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Synonyms
Publications