jgi.p|Nanoce1779_2|114539, mRNA_6829 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|114539
Unique NamemRNA_6829
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length918
Alignment locationscaffold_17:206701..208201 -

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Properties
Property NameValue
TranscriptId114625
TrackFilteredModels2
ProteinId114539
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:206701..208201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|114539gene_6829Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|114539mRNA_6829-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6829CDS_6829Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6829 ID=mRNA_6829|Name=jgi.p|Nanoce1779_2|114539|organism=Nannochloropsis oceanica|type=mRNA|length=918bp
TCCGTCTTGAGAGCCATGTGAGAAGGCAATGACGCCCCGGGCTCTTCCTC
CATTTGCCCCTTTCCTTCTTTGCATTTCATGCGCTTATCCCCGCCTTTAC
ACACACAAATAGAGCTACCGCGATCATCCACAGCCTCCTGCGTTTATCCA
GGAGCTCCCGGGATGTTGCATGGCTGGATAGGTTTTCTTTGAGCCCTGAT
TGCTACACGATCATCATCAGCAACATCATTCATGCCCCCCCCCCTGCATC
TCGATCGACAGCTTTGTACGTGTACGACTGACACATAAACAAACGCCACA
CCCACGTGAAGGAAAGCATGGCGCATCGGAAGAAAGTACTGTTTAAGTAC
ATAATCCTGGGAGACTCGGGGGTGGGTAAGACATGCCTGATGAACCAGTA
CGTGCAAAAGCGCTTCGACAAGACATACAAAGCCACCATCGGGGCGGATT
TCCTGACCAAAGACGTGATGATAGATGATAAGCTCGTCACTTTGCAGATC
TGGGACACGGCCGGGCAAGAGAAATTCCAGTCGCTGGGCCAGGCGTTTTA
CCGGGGCGCGGACGTATGCATGCTCGTCTATGACATCACTAACCCCAAGT
CTTTTGAAAATCTGGAGCACTGGCGTACGGACTTCCTCCACAACGCCTCC
CCACCCGACCCAGACAATTTCCCTTTCCTTGTGCTGGGAAATAAGGCTGA
TTTGGAATCAGAACGGAAGGTGACCAAGCAGAAGGCAATGGCGTGGACCA
AAAGCAAGGGCCCGAAGGCCATCCCTTACTTCGAGACGAGTGCCAAGGAT
GCAACTAGGGTAGAAGGCGCCTTCCTGGAGGCGGCCCAGTTGGCGTTGGC
GCGGGTGTCTCAGGAGAAGGATGAGTGAGTGGAGAGGGAAATGAAAAAAA
GAGGGAGGGAGGGAGGGA
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protein sequence of jgi.p|Nanoce1779_2|114539

>mRNA_6829-protein ID=mRNA_6829-protein|Name=jgi.p|Nanoce1779_2|114539|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MAHRKKVLFKYIILGDSGVGKTCLMNQYVQKRFDKTYKATIGADFLTKDV
MIDDKLVTLQIWDTAGQEKFQSLGQAFYRGADVCMLVYDITNPKSFENLE
HWRTDFLHNASPPDPDNFPFLVLGNKADLESERKVTKQKAMAWTKSKGPK
AIPYFETSAKDATRVEGAFLEAAQLALARVSQEKDE*
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mRNA from alignment at scaffold_17:206701..208201-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6829 ID=mRNA_6829|Name=jgi.p|Nanoce1779_2|114539|organism=Nannochloropsis oceanica|type=mRNA|length=1501bp|location=Sequence derived from alignment at scaffold_17:206701..208201- (Nannochloropsis oceanica)
TCCGTCTTGAGAGCCATGTGAGAAGGCAATGACGCCCCGGGCTCTTCCTC
CATTTGCCCCTTTCCTTCTTTGCATTTCATGCGCTTATCCCCGCCTTTAC
ACACACAAATAGAGCTACCGCGATCATCCACAGCCTCCTGCGTTTATCCA
GGAGCTCCCGGGATGTTGCATGGCTGGATAGGTTTTCTTTGAGCCCTGAT
TGCTACACGATCATCATCAGCAACATCATTCATGCCCCCCCCCCTGCATC
TCGATCGACAGCTTTGTACGTGTACGACTGACACATAAACAAACGCCACA
CCCACGTGAAGGAAAGCATGGCGCATCGGAAGAAAGTACTGTTTAAGTAC
ATAATCCTGGGAGACTCGGGGTAAGTATATCGTGAGAGGAGGACAGGTGG
GAGGAGCTCGAATCCAGTGTAGGCCGGTTGTGCACTCCTTCTATGCACAC
CCGTACAGCTTGCTTGCATGGGGCGTGAGTAGGAAAGCTGGAATTTTATT
TATGACCTCACTCTGTCAACTTACGACTTAACACCGGTTTCCTCCCTCTT
TTTTTCCTCCCTTCTCTCGTTGCGCATAGGGTGGGTAAGACATGCCTGAT
GAACCAGTACGTGCAAAAGCGCTTCGACAAGACATACAAAGCCACCATCG
GGGCGGATTTCCTGACCAAAGACGTGATGATAGATGATAAGCTCGTCACT
TTGCAGGTACGTCGCGGCGTTATCAAGTTTGTAAGAATTGGGGGAAGTGT
CTTGGGTTTCGTGTCGCGAAGGATGAGACGAAGCTTGGCTTGTGCAGAAA
AAGCAACAGTACAGGATCCATTTTCCCCTCCTTTCTTTCTGCTCAAATTA
TCGTCTTTTATCCTTCCAAATCCCTCAATGGTCATTTCACTGACGGGGTA
GATCTGGGACACGGCCGGGCAAGAGAAATTCCAGTCGCTGGGCCAGGCGT
TTTACCGGGGCGCGGACGTATGCATGCTCGTCTATGACATCACTAACCCC
AAGGTACGGTAGAGGAAGAGGGGGGTAAGGAGGCAGGAGAGGATGGGATA
AAGACAGATGTACTGGCAAAACGCGCAGGCGCTTTCTTCTAGGGAACAGA
AGTGATGAATCTCAACCATTCTACCTCCCCTCCTCTTCCCTTTCCCCCTC
CCTCCCTCCTCCCTCACTCCCTCCTCTTCTAGTCTTTTGAAAATCTGGAG
CACTGGCGTACGGACTTCCTCCACAACGCCTCCCCACCCGACCCAGACAA
TTTCCCTTTCCTTGTGCTGGGAAATAAGGCTGATTTGGAATCAGAACGGA
AGGTGACCAAGCAGAAGGCAATGGCGTGGACCAAAAGCAAGGGCCCGAAG
GCCATCCCTTACTTCGAGACGAGTGCCAAGGATGCAACTAGGGTAGAAGG
CGCCTTCCTGGAGGCGGCCCAGTTGGCGTTGGCGCGGGTGTCTCAGGAGA
AGGATGAGTGAGTGGAGAGGGAAATGAAAAAAAGAGGGAGGGAGGGAGGG
A
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Coding sequence (CDS) from alignment at scaffold_17:206701..208201-

>mRNA_6829 ID=mRNA_6829|Name=jgi.p|Nanoce1779_2|114539|organism=Nannochloropsis oceanica|type=CDS|length=2244bp|location=Sequence derived from alignment at scaffold_17:206701..208201- (Nannochloropsis oceanica)
TCTTTTGAAAATCTGGAGCACTGGCGTACGGACTTCCTCCACAACGCCTC
CCCACCCGACCCAGACAATTTCCCTTTCCTTGTGCTGGGAAATAAGGCTG
ATTTGGAATCAGAACGGAAGGTGACCAAGCAGAAGGCAATGGCGTGGACC
AAAAGCAAGGGCCCGAAGGCCATCCCTTACTTCGAGACGAGTGCCAAGGA
TGCAACTAGGGTAGAAGGCGCCTTCCTGGAGGCGGCCCAGTTGGCGTTGG
CGCGGGTGTCTCAGGAGAAGGATGAGTGAATCTGGGACACGGCCGGGCAA
GAGAAATTCCAGTCGCTGGGCCAGGCGTTTTACCGGGGCGCGGACGTATG
CATGCTCGTCTATGACATCACTAACCCCAAGGGTGGGTAAGACATGCCTG
ATGAACCAGTACGTGCAAAAGCGCTTCGACAAGACATACAAAGCCACCAT
CGGGGCGGATTTCCTGACCAAAGACGTGATGATAGATGATAAGCTCGTCA
CTTTGCAGATGGCGCATCGGAAGAAAGTACTGTTTAAGTACATAATCCTG
GGAGACTCGGGTCTTTTGAAAATCTGGAGCACTGGCGTACGGACTTCCTC
CACAACGCCTCCCCACCCGACCCAGACAATTTCCCTTTCCTTGTGCTGGG
AAATAAGGCTGATTTGGAATCAGAACGGAAGGTGACCAAGCAGAAGGCAA
TGGCGTGGACCAAAAGCAAGGGCCCGAAGGCCATCCCTTACTTCGAGACG
AGTGCCAAGGATGCAACTAGGGTAGAAGGCGCCTTCCTGGAGGCGGCCCA
GTTGGCGTTGGCGCGGGTGTCTCAGGAGAAGGATGAGTGAATCTGGGACA
CGGCCGGGCAAGAGAAATTCCAGTCGCTGGGCCAGGCGTTTTACCGGGGC
GCGGACGTATGCATGCTCGTCTATGACATCACTAACCCCAAGGGTGGGTA
AGACATGCCTGATGAACCAGTACGTGCAAAAGCGCTTCGACAAGACATAC
AAAGCCACCATCGGGGCGGATTTCCTGACCAAAGACGTGATGATAGATGA
TAAGCTCGTCACTTTGCAGATGGCGCATCGGAAGAAAGTACTGTTTAAGT
ACATAATCCTGGGAGACTCGGGTCTTTTGAAAATCTGGAGCACTGGCGTA
CGGACTTCCTCCACAACGCCTCCCCACCCGACCCAGACAATTTCCCTTTC
CTTGTGCTGGGAAATAAGGCTGATTTGGAATCAGAACGGAAGGTGACCAA
GCAGAAGGCAATGGCGTGGACCAAAAGCAAGGGCCCGAAGGCCATCCCTT
ACTTCGAGACGAGTGCCAAGGATGCAACTAGGGTAGAAGGCGCCTTCCTG
GAGGCGGCCCAGTTGGCGTTGGCGCGGGTGTCTCAGGAGAAGGATGAGTG
AATCTGGGACACGGCCGGGCAAGAGAAATTCCAGTCGCTGGGCCAGGCGT
TTTACCGGGGCGCGGACGTATGCATGCTCGTCTATGACATCACTAACCCC
AAGGGTGGGTAAGACATGCCTGATGAACCAGTACGTGCAAAAGCGCTTCG
ACAAGACATACAAAGCCACCATCGGGGCGGATTTCCTGACCAAAGACGTG
ATGATAGATGATAAGCTCGTCACTTTGCAGATGGCGCATCGGAAGAAAGT
ACTGTTTAAGTACATAATCCTGGGAGACTCGGGTCTTTTGAAAATCTGGA
GCACTGGCGTACGGACTTCCTCCACAACGCCTCCCCACCCGACCCAGACA
ATTTCCCTTTCCTTGTGCTGGGAAATAAGGCTGATTTGGAATCAGAACGG
AAGGTGACCAAGCAGAAGGCAATGGCGTGGACCAAAAGCAAGGGCCCGAA
GGCCATCCCTTACTTCGAGACGAGTGCCAAGGATGCAACTAGGGTAGAAG
GCGCCTTCCTGGAGGCGGCCCAGTTGGCGTTGGCGCGGGTGTCTCAGGAG
AAGGATGAGTGAATCTGGGACACGGCCGGGCAAGAGAAATTCCAGTCGCT
GGGCCAGGCGTTTTACCGGGGCGCGGACGTATGCATGCTCGTCTATGACA
TCACTAACCCCAAGGGTGGGTAAGACATGCCTGATGAACCAGTACGTGCA
AAAGCGCTTCGACAAGACATACAAAGCCACCATCGGGGCGGATTTCCTGA
CCAAAGACGTGATGATAGATGATAAGCTCGTCACTTTGCAGATGGCGCAT
CGGAAGAAAGTACTGTTTAAGTACATAATCCTGGGAGACTCGGG
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Synonyms
Publications