jgi.p|Nanoce1779_2|596454, mRNA_6827 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596454
Unique NamemRNA_6827
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length854
Alignment locationscaffold_17:200434..201376 -

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Properties
Property NameValue
TranscriptId596540
TrackFilteredModels2
ProteinId596454
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:200434..201376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596454gene_6827Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596454mRNA_6827-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6827CDS_6827Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6827 ID=mRNA_6827|Name=jgi.p|Nanoce1779_2|596454|organism=Nannochloropsis oceanica|type=mRNA|length=854bp
ACAGTCTCGAGCGATGCCTGCAGCTGATGCCGCTGATCGGGCAGCCAACG
GCACTTCGTCATCACCCTCTCCGCCAGCCTCTTCCTCCCCATCTCCACCA
ACGCAGCAAGGTGCCTCCAAATACGCCATCCGCCTCTTTGGCCCCAAGGA
CGATCATAGCATCTGCAAGATCTACATTGAGAAAGCCAAGAAGACCCCTC
GCGTCCAAGAACTCGTCGGAGCCATCACCGACCTCGGTTGCCCCATCGAC
CTCGACACCATGGTAGACTGTCGCAAATGTAGCATAGCAGCCACCGGTGG
CTTTATTGCGAATCATCAAGGCCTAAAAGAAGGGGACTACAAGCCAAAAG
TAGTGGTGTGTGAGGATAATTTACTCGGGTCTCACTACGTGGCCCAGACC
CTGGCACATGAGCTCGTGCATGCTTATGATCAATGCCGTGCGAAAGTTAA
TTGGAGGAGTTGTTACCATTATGCTTGTACGGAGATACGGGCGAGTACGT
TGAGTGGGGAGTGTGATTTTGTTGAAGAATTTGACAGGGGGAATTTCGGA
ATGCGCGCGCAGCATCAAGAGTGCGTGAGGAGGAGGGCAGAGTTGAGTAT
GATGGTGAATGAGTCATGCAAGGGCAAGGCGAAAGAGGTGATTGAGAAGG
TGTTTGCACGGTGTTATCAGGACACGGCGCCGTATGACAAAATACCTTGA
GTCGGAAATAGGGGGGTGATGGAGATATTGGAGGGCTAGAAGGAGAAAGA
GACGTCAGAAGAGCAATAGCAAAATAGTTCAGGCGGGAGGAAGAAAGGGA
GGGAAAGGAAAGGCAAGAAAGTAAAAAGAAGAAGACAGACAACGCATCTT
AAAG
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protein sequence of jgi.p|Nanoce1779_2|596454

>mRNA_6827-protein ID=mRNA_6827-protein|Name=jgi.p|Nanoce1779_2|596454|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MPAADAADRAANGTSSSPSPPASSSPSPPTQQGASKYAIRLFGPKDDHSI
CKIYIEKAKKTPRVQELVGAITDLGCPIDLDTMVDCRKCSIAATGGFIAN
HQGLKEGDYKPKVVVCEDNLLGSHYVAQTLAHELVHAYDQCRAKVNWRSC
YHYACTEIRASTLSGECDFVEEFDRGNFGMRAQHQECVRRRAELSMMVNE
SCKGKAKEVIEKVFARCYQDTAPYDKIP*
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mRNA from alignment at scaffold_17:200434..201376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6827 ID=mRNA_6827|Name=jgi.p|Nanoce1779_2|596454|organism=Nannochloropsis oceanica|type=mRNA|length=943bp|location=Sequence derived from alignment at scaffold_17:200434..201376- (Nannochloropsis oceanica)
ACAGTCTCGAGCGATGCCTGCAGCTGATGCCGCTGATCGGGCAGCCAACG
GCACTTCGTCATCACCCTCTCCGCCAGCCTCTTCCTCCCCATCTCCACCA
ACGCAGCAAGGTGCCTCCAAATACGCCATCCGCCTCTTTGGCCCCAAGGA
CGATCATAGCATCTGCAAGATCTACATTGAGAAAGCCAAGAAGAGTACGT
TTATTTGTTCGTTTGCGCCTCTCCTGAGATCTGTATTCTCATCCCTCCCG
CTCCCTCTCTCCCTTCCTCCCTCACTTACTCAGCCCCTCGCGTCCAAGAA
CTCGTCGGAGCCATCACCGACCTCGGTTGCCCCATCGACCTCGACACCAT
GGTAGACTGTCGCAAATGTAGCATAGCAGCCACCGGTGGCTTTATTGCGA
ATCATCAAGGCCTAAAAGAAGGGGACTACAAGCCAAAAGTAGTGGTGTGT
GAGGATAATTTACTCGGGTCTCACTACGTGGCCCAGACCCTGGCACATGA
GCTCGTGCATGCTTATGATCAATGCCGTGCGAAAGTTAATTGGAGGAGTT
GTTACCATTATGCTTGTACGGAGATACGGGCGAGTACGTTGAGTGGGGAG
TGTGATTTTGTTGAAGAATTTGACAGGGGGAATTTCGGAATGCGCGCGCA
GCATCAAGAGTGCGTGAGGAGGAGGGCAGAGTTGAGTATGATGGTGAATG
AGTCATGCAAGGGCAAGGCGAAAGAGGTGATTGAGAAGGTGTTTGCACGG
TGTTATCAGGACACGGCGCCGTATGACAAAATACCTTGAGTCGGAAATAG
GGGGGTGATGGAGATATTGGAGGGCTAGAAGGAGAAAGAGACGTCAGAAG
AGCAATAGCAAAATAGTTCAGGCGGGAGGAAGAAAGGGAGGGAAAGGAAA
GGCAAGAAAGTAAAAAGAAGAAGACAGACAACGCATCTTAAAG
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Coding sequence (CDS) from alignment at scaffold_17:200434..201376-

>mRNA_6827 ID=mRNA_6827|Name=jgi.p|Nanoce1779_2|596454|organism=Nannochloropsis oceanica|type=CDS|length=1374bp|location=Sequence derived from alignment at scaffold_17:200434..201376- (Nannochloropsis oceanica)
CCCCTCGCGTCCAAGAACTCGTCGGAGCCATCACCGACCTCGGTTGCCCC
ATCGACCTCGACACCATGGTAGACTGTCGCAAATGTAGCATAGCAGCCAC
CGGTGGCTTTATTGCGAATCATCAAGGCCTAAAAGAAGGGGACTACAAGC
CAAAAGTAGTGGTGTGTGAGGATAATTTACTCGGGTCTCACTACGTGGCC
CAGACCCTGGCACATGAGCTCGTGCATGCTTATGATCAATGCCGTGCGAA
AGTTAATTGGAGGAGTTGTTACCATTATGCTTGTACGGAGATACGGGCGA
GTACGTTGAGTGGGGAGTGTGATTTTGTTGAAGAATTTGACAGGGGGAAT
TTCGGAATGCGCGCGCAGCATCAAGAGTGCGTGAGGAGGAGGGCAGAGTT
GAGTATGATGGTGAATGAGTCATGCAAGGGCAAGGCGAAAGAGGTGATTG
AGAAGGTGTTTGCACGGTGTTATCAGGACACGGCGCCGTATGACAAAATA
CCTTGAATGCCTGCAGCTGATGCCGCTGATCGGGCAGCCAACGGCACTTC
GTCATCACCCTCTCCGCCAGCCTCTTCCTCCCCATCTCCACCAACGCAGC
AAGGTGCCTCCAAATACGCCATCCGCCTCTTTGGCCCCAAGGACGATCAT
AGCATCTGCAAGATCTACATTGAGAAAGCCAAGAAGACCCCTCGCGTCCA
AGAACTCGTCGGAGCCATCACCGACCTCGGTTGCCCCATCGACCTCGACA
CCATGGTAGACTGTCGCAAATGTAGCATAGCAGCCACCGGTGGCTTTATT
GCGAATCATCAAGGCCTAAAAGAAGGGGACTACAAGCCAAAAGTAGTGGT
GTGTGAGGATAATTTACTCGGGTCTCACTACGTGGCCCAGACCCTGGCAC
ATGAGCTCGTGCATGCTTATGATCAATGCCGTGCGAAAGTTAATTGGAGG
AGTTGTTACCATTATGCTTGTACGGAGATACGGGCGAGTACGTTGAGTGG
GGAGTGTGATTTTGTTGAAGAATTTGACAGGGGGAATTTCGGAATGCGCG
CGCAGCATCAAGAGTGCGTGAGGAGGAGGGCAGAGTTGAGTATGATGGTG
AATGAGTCATGCAAGGGCAAGGCGAAAGAGGTGATTGAGAAGGTGTTTGC
ACGGTGTTATCAGGACACGGCGCCGTATGACAAAATACCTTGAATGCCTG
CAGCTGATGCCGCTGATCGGGCAGCCAACGGCACTTCGTCATCACCCTCT
CCGCCAGCCTCTTCCTCCCCATCTCCACCAACGCAGCAAGGTGCCTCCAA
ATACGCCATCCGCCTCTTTGGCCCCAAGGACGATCATAGCATCTGCAAGA
TCTACATTGAGAAAGCCAAGAAGA
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Synonyms
Publications