jgi.p|Nanoce1779_2|596450, mRNA_6826 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596450
Unique Name	mRNA_6826
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2812
Alignment location	scaffold_17:197341..200266 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596536
Track	FilteredModels2
ProteinId	596450

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:197341..200266 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596450	gene_6826	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596450	mRNA_6826-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6826	CDS_6826	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:197341..200266+
coding sequence from alignment at scaffold_17:197341..200266+

mRNA sequence

>mRNA_6826 ID=mRNA_6826|Name=jgi.p|Nanoce1779_2|596450|organism=Nannochloropsis oceanica|type=mRNA|length=2812bp
CTCCATATATATCCCTTGCACCCGCTTGGGCGGCCAGCGGCCCCAACGGA
ATGTTTTCTTTGACGACGGGCGCGTCTTCGCGAAAAGCTGTTGAAAGCCG
ACGTGCACTTGCTTGGACTTGCGAGGCAAAGGGATTCACAAACCAAGGTA
TGCCCACGAATTCAGCCAGGTACATACACGAGGTAAGGTGACCTTATACG
ACACACAGGTTTGTTGGAGATTGCATGATTGACTTGGAGAGGAACCGCCA
GGTGCAGGGCACGCCACAGGCGTTTGGATCTCGGGAGAACATTTTAAATA
TTCAACGGCTTTGTGTACGACAAACAACCTCATCCCCCCTCCACAGCCCC
TCGCGGGCTGCATCATCTCTTCTTTGTCCCTTCAAGTCGTCGCCTCCCAA
TGTTTCGGCGGTTGTCGGCTACGGTGTGAATGGCAAAAGAAACAAAATGA
GATCAGACGAGGCGTGTGTGAAGAGGTGCACCTTCTCATTACCAGCCCGC
ACCCACATTGCCACCATGGTAGACCTTCCTGCCATTCGCCTAGCTTCACC
TGTCGCCTAAAACGAACCCCCGCAGCATCCTTCACATTTTGACAAGTAGG
TCACACTCCTCCAACTCCCTCCCAACTTGTTGCAGCAGCCACAAGCTATG
GCTACGACCAACTCGGCGCCGCCGGCGCCGCCCCACGGTGCCGCCCCCGC
GCCGCCAAAGAGCGGCGGTTTCCCGTCCAACCACCCACGGGTGGAGCAAG
TGTATGACCTGGGACGCGTGCTCGGCAAGGGCAGCTTTAGCACAGTTTAC
TTAGGCGTGCAGAAGATCACGGGGGAGGAAGTAGCGCTGAAGGTAATCCC
GGCCAAGAATTACCGGCACAACGAGCGGGCCAAACAATTGCTGCGGACGG
AGGTGGCGGTAATGAGCCGCATTCGGAAGCTGCATCACCCTAATTTGATG
AACTTTAAGCACACATTTGAGGATGCGGAGAAGATAGTCATGGTCCTCGA
GATCCTCTCCGGCGGGGAACTATTCGACCGCATCGTGAAGAAAGGCCATT
ACTCCGAACGAGACGCCAGCCTGCTTACGGGCGTGATTGTCCGTGCCCTG
GGTGCATTGCACTCTGTGGGTATCCTCCACCGGGACCTTAAGCCCGAAAA
CTGCATCTATTCAACTGCCTCCGAAGACTCTCCCTTAAAAATCACTGACT
TTGGCCTTGCGGCACTCGTCTCCTCTCCGACGGATAAATTGGTGGACAGG
CACTTGGTGGGTACACCTGGGTACATCTGCCCCGCAGTATTAACAAGTTA
TGAGTATAGTGCTGCCAGCGATATCTGGGCCGCGGGGGTAATCTTATTTA
TTCTTTTGAGTGGCTCGCCGCCGTTCTACGGTCGGACGCACAAGGAGATC
TTTGAGAAGATCAAGACAGCCCATTGGGGCTTTCACGGTCGGAATTGGAG
CCAGGTCTCAGAGGGGGCAAAGGACTTGGTGAAGCGAATGCTGAGGCAGA
AGCCGGCGGACAGGCTGACGGTGGAGGAGGTGTTGGATCACCCGTGGATC
AGGGAGCATGAGCAGGTGTCGGAGGAGGACCTGCCGGGGACTTTGGAAAG
CTTGAAATTGTTCAGCGCCAGGCAGAAGTTCCGGGCGGCGGTGATGGTAT
GTGTTGGCTCGGCGAGGATGCAGAGGGTGAAATTGGCGGCAGCGGCAGCT
GCTGCTGGTGGGAAGGAAGCGAAAGAAGGGAGAGAGGAGAGGAAGCAGGA
GGAGGAGTTCTTGCGGGGGTTGTTTTCGGAGGAGGAGCTTGAGATGCTGA
AGGTGGAGTTTGGACGAGTAGCGGCTGAGAATGCAATGACGAGCCCAAGT
ACCCTCGAGGGAAATGTGGGGGGGAAGGTGCTGAATTTCGGCCAGTTTAG
GGAGATTATGACACGCTTAGGCCTGGATCATTTGCCGCTGGAAAGGATAT
TTAAGGTGTTCGATTCGAATGGAACGGGGGATGTGGACTATCGGGAGTTT
TTGGTGGGGGTGAGCAAATTCAGGCTGCGGGGGACTGCGGCGCTGAAGTT
TTGTTTCGAGGTGTTTGATGAGGATAACAGCGGGGCGATTTCCAGGGAAG
AGATGACGAAGGTGCTGGTGCACACGAGGAGGAAGAGCTTGGCGGTTCAT
CACCTCGTGCAGCAGCAGCGGGAGCAGGAATCTGCGAGGATGCACGTTGT
GGGCGATTCGCCCGTTGCGTCGGCGGCGGTGGAAGGAGCAGGAGCAGGAT
CGGCAGCAGGAGGAGGGCCTATGGTGGTTGCGTCAGATGACGGGGAGACC
GCTCAGGTGGTGGAGGGGGGAGGGAGGATGGGAGAAAAAGGAGGCGGGGA
AAAAGGAAGGTTACCCCCTCCAGTGGCGTCGTTTGATCCCAGGTTCATGG
AGATGGACGCGGATGCGTACGAGATAGCGGAAAGCATAGCGGAGTTATTT
GATAGTCTTGATCAGAATAAGGATAATCAGGTGACGTTGGAAGAGTTTAT
GGAGGGGGCGAAGAAGCATCCGGGTTTGTTGGATGTCATCCTCGGAGCGG
GGGAAGGAGGGGTAGGAGAAGGAGGAGGGAGAGGTGGAAAGGAGAGAGGA
GAGCGGGCTCATGGAGCATTGGGGGGGGCGAAGGAAGGGCATGGATTAAT
TTAAGGAAGGGAAAGGAGAAGGAGAAGTGAAGGAGGGTGATGAGGAGGAC
GAAGGGGAAGAGGAAGAGGAGGACGGAGAGGAAGAGGAGGAGGAGGAGGA
GGAGGAGGAGGATGACGAAGAGGTGTGGTTGGTGGTCGGGTAGGGCATGG
AGGAATGGAGGG

protein sequence of jgi.p|Nanoce1779_2|596450

>mRNA_6826-protein ID=mRNA_6826-protein|Name=jgi.p|Nanoce1779_2|596450|organism=Nannochloropsis oceanica|type=polypeptide|length=669bp
MATTNSAPPAPPHGAAPAPPKSGGFPSNHPRVEQVYDLGRVLGKGSFSTV
YLGVQKITGEEVALKVIPAKNYRHNERAKQLLRTEVAVMSRIRKLHHPNL
MNFKHTFEDAEKIVMVLEILSGGELFDRIVKKGHYSERDASLLTGVIVRA
LGALHSVGILHRDLKPENCIYSTASEDSPLKITDFGLAALVSSPTDKLVD
RHLVGTPGYICPAVLTSYEYSAASDIWAAGVILFILLSGSPPFYGRTHKE
IFEKIKTAHWGFHGRNWSQVSEGAKDLVKRMLRQKPADRLTVEEVLDHPW
IREHEQVSEEDLPGTLESLKLFSARQKFRAAVMVCVGSARMQRVKLAAAA
AAAGGKEAKEGREERKQEEEFLRGLFSEEELEMLKVEFGRVAAENAMTSP
STLEGNVGGKVLNFGQFREIMTRLGLDHLPLERIFKVFDSNGTGDVDYRE
FLVGVSKFRLRGTAALKFCFEVFDEDNSGAISREEMTKVLVHTRRKSLAV
HHLVQQQREQESARMHVVGDSPVASAAVEGAGAGSAAGGGPMVVASDDGE
TAQVVEGGGRMGEKGGGEKGRLPPPVASFDPRFMEMDADAYEIAESIAEL
FDSLDQNKDNQVTLEEFMEGAKKHPGLLDVILGAGEGGVGEGGGRGGKER
GERAHGALGGAKEGHGLI*

mRNA from alignment at scaffold_17:197341..200266+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6826 ID=mRNA_6826|Name=jgi.p|Nanoce1779_2|596450|organism=Nannochloropsis oceanica|type=mRNA|length=2926bp|location=Sequence derived from alignment at scaffold_17:197341..200266+ (Nannochloropsis oceanica)
CTCCATATATATCCCTTGCACCCGCTTGGGCGGCCAGCGGCCCCAACGGA
ATGTTTTCTTTGACGACGGGCGCGTCTTCGCGAAAAGCTGTTGAAAGCCG
ACGTGCACTTGCTTGGACTTGCGAGGCAAAGGGATTCACAAACCAAGGTA
TGCCCACGAATTCAGCCAGGTACATACACGAGGTAAGGTGACCTTATACG
ACACACAGGTTTGTTGGAGATTGCATGATTGACTTGGAGAGGAACCGCCA
GGTGCAGGGCACGCCACAGGCGTTTGGATCTCGGGAGAACATTTTAAATA
TTCAACGGCTTTGTGTACGACAAACAACCTCATCCCCCCTCCACAGCCCC
TCGCGGGCTGCATCATCTCTTCTTTGTCCCTTCAAGTCGTCGCCTCCCAA
TGTTTCGGCGGTTGTCGGCTACGGTGTGAATGGCAAAAGAAACAAAATGA
GATCAGACGAGGCGTGTGTGAAGAGGTGCACCTTCTCATTACCAGCCCGC
ACCCACATTGCCACCATGGTAGACCTTCCTGCCATTCGCCTAGCTTCACC
TGTCGCCTAAAACGAACCCCCGCAGCATCCTTCACATTTTGACAAGTCTG
TAAGACACGTGTGTCTTCTTCTTCATCCTGGCCCTCATTTGTCGTGATTC
AATTCCAATCAAGATGGACTTTGACATCAACCCCATACGCAATATCGTCA
CCATCATCTACAGGTCACACTCCTCCAACTCCCTCCCAACTTGTTGCAGC
AGCCACAAGCTATGGCTACGACCAACTCGGCGCCGCCGGCGCCGCCCCAC
GGTGCCGCCCCCGCGCCGCCAAAGAGCGGCGGTTTCCCGTCCAACCACCC
ACGGGTGGAGCAAGTGTATGACCTGGGACGCGTGCTCGGCAAGGGCAGCT
TTAGCACAGTTTACTTAGGCGTGCAGAAGATCACGGGGGAGGAAGTAGCG
CTGAAGGTAATCCCGGCCAAGAATTACCGGCACAACGAGCGGGCCAAACA
ATTGCTGCGGACGGAGGTGGCGGTAATGAGCCGCATTCGGAAGCTGCATC
ACCCTAATTTGATGAACTTTAAGCACACATTTGAGGATGCGGAGAAGATA
GTCATGGTCCTCGAGATCCTCTCCGGCGGGGAACTATTCGACCGCATCGT
GAAGAAAGGCCATTACTCCGAACGAGACGCCAGCCTGCTTACGGGCGTGA
TTGTCCGTGCCCTGGGTGCATTGCACTCTGTGGGTATCCTCCACCGGGAC
CTTAAGCCCGAAAACTGCATCTATTCAACTGCCTCCGAAGACTCTCCCTT
AAAAATCACTGACTTTGGCCTTGCGGCACTCGTCTCCTCTCCGACGGATA
AATTGGTGGACAGGCACTTGGTGGGTACACCTGGGTACATCTGCCCCGCA
GTATTAACAAGTTATGAGTATAGTGCTGCCAGCGATATCTGGGCCGCGGG
GGTAATCTTATTTATTCTTTTGAGTGGCTCGCCGCCGTTCTACGGTCGGA
CGCACAAGGAGATCTTTGAGAAGATCAAGACAGCCCATTGGGGCTTTCAC
GGTCGGAATTGGAGCCAGGTCTCAGAGGGGGCAAAGGACTTGGTGAAGCG
AATGCTGAGGCAGAAGCCGGCGGACAGGCTGACGGTGGAGGAGGTGTTGG
ATCACCCGTGGATCAGGGAGCATGAGCAGGTGTCGGAGGAGGACCTGCCG
GGGACTTTGGAAAGCTTGAAATTGTTCAGCGCCAGGCAGAAGTTCCGGGC
GGCGGTGATGGTATGTGTTGGCTCGGCGAGGATGCAGAGGGTGAAATTGG
CGGCAGCGGCAGCTGCTGCTGGTGGGAAGGAAGCGAAAGAAGGGAGAGAG
GAGAGGAAGCAGGAGGAGGAGTTCTTGCGGGGGTTGTTTTCGGAGGAGGA
GCTTGAGATGCTGAAGGTGGAGTTTGGACGAGTAGCGGCTGAGAATGCAA
TGACGAGCCCAAGTACCCTCGAGGGAAATGTGGGGGGGAAGGTGCTGAAT
TTCGGCCAGTTTAGGGAGATTATGACACGCTTAGGCCTGGATCATTTGCC
GCTGGAAAGGATATTTAAGGTGTTCGATTCGAATGGAACGGGGGATGTGG
ACTATCGGGAGTTTTTGGTGGGGGTGAGCAAATTCAGGCTGCGGGGGACT
GCGGCGCTGAAGTTTTGTTTCGAGGTGTTTGATGAGGATAACAGCGGGGC
GATTTCCAGGGAAGAGATGACGAAGGTGCTGGTGCACACGAGGAGGAAGA
GCTTGGCGGTTCATCACCTCGTGCAGCAGCAGCGGGAGCAGGAATCTGCG
AGGATGCACGTTGTGGGCGATTCGCCCGTTGCGTCGGCGGCGGTGGAAGG
AGCAGGAGCAGGATCGGCAGCAGGAGGAGGGCCTATGGTGGTTGCGTCAG
ATGACGGGGAGACCGCTCAGGTGGTGGAGGGGGGAGGGAGGATGGGAGAA
AAAGGAGGCGGGGAAAAAGGAAGGTTACCCCCTCCAGTGGCGTCGTTTGA
TCCCAGGTTCATGGAGATGGACGCGGATGCGTACGAGATAGCGGAAAGCA
TAGCGGAGTTATTTGATAGTCTTGATCAGAATAAGGATAATCAGGTGACG
TTGGAAGAGTTTATGGAGGGGGCGAAGAAGCATCCGGGTTTGTTGGATGT
CATCCTCGGAGCGGGGGAAGGAGGGGTAGGAGAAGGAGGAGGGAGAGGTG
GAAAGGAGAGAGGAGAGCGGGCTCATGGAGCATTGGGGGGGGCGAAGGAA
GGGCATGGATTAATTTAAGGAAGGGAAAGGAGAAGGAGAAGTGAAGGAGG
GTGATGAGGAGGACGAAGGGGAAGAGGAAGAGGAGGACGGAGAGGAAGAG
GAGGAGGAGGAGGAGGAGGAGGAGGATGACGAAGAGGTGTGGTTGGTGGT
CGGGTAGGGCATGGAGGAATGGAGGG

Coding sequence (CDS) from alignment at scaffold_17:197341..200266+

>mRNA_6826 ID=mRNA_6826|Name=jgi.p|Nanoce1779_2|596450|organism=Nannochloropsis oceanica|type=CDS|length=2007bp|location=Sequence derived from alignment at scaffold_17:197341..200266+ (Nannochloropsis oceanica)
ATGGCTACGACCAACTCGGCGCCGCCGGCGCCGCCCCACGGTGCCGCCCC
CGCGCCGCCAAAGAGCGGCGGTTTCCCGTCCAACCACCCACGGGTGGAGC
AAGTGTATGACCTGGGACGCGTGCTCGGCAAGGGCAGCTTTAGCACAGTT
TACTTAGGCGTGCAGAAGATCACGGGGGAGGAAGTAGCGCTGAAGGTAAT
CCCGGCCAAGAATTACCGGCACAACGAGCGGGCCAAACAATTGCTGCGGA
CGGAGGTGGCGGTAATGAGCCGCATTCGGAAGCTGCATCACCCTAATTTG
ATGAACTTTAAGCACACATTTGAGGATGCGGAGAAGATAGTCATGGTCCT
CGAGATCCTCTCCGGCGGGGAACTATTCGACCGCATCGTGAAGAAAGGCC
ATTACTCCGAACGAGACGCCAGCCTGCTTACGGGCGTGATTGTCCGTGCC
CTGGGTGCATTGCACTCTGTGGGTATCCTCCACCGGGACCTTAAGCCCGA
AAACTGCATCTATTCAACTGCCTCCGAAGACTCTCCCTTAAAAATCACTG
ACTTTGGCCTTGCGGCACTCGTCTCCTCTCCGACGGATAAATTGGTGGAC
AGGCACTTGGTGGGTACACCTGGGTACATCTGCCCCGCAGTATTAACAAG
TTATGAGTATAGTGCTGCCAGCGATATCTGGGCCGCGGGGGTAATCTTAT
TTATTCTTTTGAGTGGCTCGCCGCCGTTCTACGGTCGGACGCACAAGGAG
ATCTTTGAGAAGATCAAGACAGCCCATTGGGGCTTTCACGGTCGGAATTG
GAGCCAGGTCTCAGAGGGGGCAAAGGACTTGGTGAAGCGAATGCTGAGGC
AGAAGCCGGCGGACAGGCTGACGGTGGAGGAGGTGTTGGATCACCCGTGG
ATCAGGGAGCATGAGCAGGTGTCGGAGGAGGACCTGCCGGGGACTTTGGA
AAGCTTGAAATTGTTCAGCGCCAGGCAGAAGTTCCGGGCGGCGGTGATGG
TATGTGTTGGCTCGGCGAGGATGCAGAGGGTGAAATTGGCGGCAGCGGCA
GCTGCTGCTGGTGGGAAGGAAGCGAAAGAAGGGAGAGAGGAGAGGAAGCA
GGAGGAGGAGTTCTTGCGGGGGTTGTTTTCGGAGGAGGAGCTTGAGATGC
TGAAGGTGGAGTTTGGACGAGTAGCGGCTGAGAATGCAATGACGAGCCCA
AGTACCCTCGAGGGAAATGTGGGGGGGAAGGTGCTGAATTTCGGCCAGTT
TAGGGAGATTATGACACGCTTAGGCCTGGATCATTTGCCGCTGGAAAGGA
TATTTAAGGTGTTCGATTCGAATGGAACGGGGGATGTGGACTATCGGGAG
TTTTTGGTGGGGGTGAGCAAATTCAGGCTGCGGGGGACTGCGGCGCTGAA
GTTTTGTTTCGAGGTGTTTGATGAGGATAACAGCGGGGCGATTTCCAGGG
AAGAGATGACGAAGGTGCTGGTGCACACGAGGAGGAAGAGCTTGGCGGTT
CATCACCTCGTGCAGCAGCAGCGGGAGCAGGAATCTGCGAGGATGCACGT
TGTGGGCGATTCGCCCGTTGCGTCGGCGGCGGTGGAAGGAGCAGGAGCAG
GATCGGCAGCAGGAGGAGGGCCTATGGTGGTTGCGTCAGATGACGGGGAG
ACCGCTCAGGTGGTGGAGGGGGGAGGGAGGATGGGAGAAAAAGGAGGCGG
GGAAAAAGGAAGGTTACCCCCTCCAGTGGCGTCGTTTGATCCCAGGTTCA
TGGAGATGGACGCGGATGCGTACGAGATAGCGGAAAGCATAGCGGAGTTA
TTTGATAGTCTTGATCAGAATAAGGATAATCAGGTGACGTTGGAAGAGTT
TATGGAGGGGGCGAAGAAGCATCCGGGTTTGTTGGATGTCATCCTCGGAG
CGGGGGAAGGAGGGGTAGGAGAAGGAGGAGGGAGAGGTGGAAAGGAGAGA
GGAGAGCGGGCTCATGGAGCATTGGGGGGGGCGAAGGAAGGGCATGGATT
AATTTAA

Synonyms

Publications