jgi.p|Nanoce1779_2|114141, mRNA_6824 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|114141
Unique NamemRNA_6824
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length522
Alignment locationscaffold_17:193428..194077 +

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Properties
Property NameValue
TranscriptId114227
TrackFilteredModels2
ProteinId114141
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:193428..194077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|114141gene_6824Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|114141mRNA_6824-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6824CDS_6824Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6824 ID=mRNA_6824|Name=jgi.p|Nanoce1779_2|114141|organism=Nannochloropsis oceanica|type=mRNA|length=522bp
CGTCGTCGTTCTTGCGGTTGCCGTTGTTGTTGTTGTTGTTGTTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTCCTCCTTCCCTCCCGC
TATCCGTCCATTCCATGAGAGGCTTTAAGAGCGCCCTAGTACACACAATT
TATCTCTCACTCTCCGTTTCTTTATCTTCTCGTAATGAAGAAAAGACGGA
AGAGCATTGCCCCCCGCCCCTCGCTTCATTCCTTTGCATCTCTTCTGTTC
ACACACTTCGCCTCCGCCTCCTCCTCCTTGTCTTTCCTGCGCCCTTTGTC
ACACACCAACAGTTGTGGATAAATGAAAACATGTGGTCTCTCACTCACTT
TTTCTTTCGGTTCTTCCTACTTCCTTTATTTCTCCCTTCTTTCTCTTATT
CACACGGTCGCCTTCGCTCCTATACCAGGATGTTCTACTAATGTTAAAGA
ATAGACTCTGCCCTTCCCCTCCTCTCCCAACCTTTCTTTCATATGCATAA
CTCACTTCCGCTCAAATTTTCC
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protein sequence of jgi.p|Nanoce1779_2|114141

>mRNA_6824-protein ID=mRNA_6824-protein|Name=jgi.p|Nanoce1779_2|114141|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MRGFKSALVHTIYLSLSVSLSSRNEEKTEEHCPPPLASFLCISSVHTLRL
RLLLLVFPAPFVTHQQLWINENMWSLTHFFFRFFLLPLFLPSFSYSHGRL
RSYTRMFY*
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mRNA from alignment at scaffold_17:193428..194077+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6824 ID=mRNA_6824|Name=jgi.p|Nanoce1779_2|114141|organism=Nannochloropsis oceanica|type=mRNA|length=650bp|location=Sequence derived from alignment at scaffold_17:193428..194077+ (Nannochloropsis oceanica)
CGTCGTCGTTCTTGCGGTTGCCGTTGTTGTTGTTGTTGTTGTTGCTGCTG CTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTCCTCCTTCCCTCCCGC TATCCGTCCATTCCATGAGAGGCTTTAAGAGCGCCCTAGTACACACAATT TATCTCTCACTCTCCGTTTCTTTATCTCCTTCTTAATCTGTCTATCTTCT TCCTCCTCCTCCCCCCCCCTTCATTTTTTTCCTCTTCCATCTCCTGTCTC AATGCCTTAAGTTTTGGCTCTGACCGATTAATTTCTCTTTCATTTTCTTC TTTCTTCTCGTAATGAAGAAAAGACGGAAGAGCATTGCCCCCCGCCCCTC GCTTCATTCCTTTGCATCTCTTCTGTTCACACACTTCGCCTCCGCCTCCT CCTCCTTGTCTTTCCTGCGCCCTTTGTCACACACCAACAGTTGTGGATAA ATGAAAACATGTGGTCTCTCACTCACTTTTTCTTTCGGTTCTTCCTACTT CCTTTATTTCTCCCTTCTTTCTCTTATTCACACGGTCGCCTTCGCTCCTA TACCAGGATGTTCTACTAATGTTAAAGAATAGACTCTGCCCTTCCCCTCC TCTCCCAACCTTTCTTTCATATGCATAACTCACTTCCGCTCAAATTTTCC
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Coding sequence (CDS) from alignment at scaffold_17:193428..194077+

>mRNA_6824 ID=mRNA_6824|Name=jgi.p|Nanoce1779_2|114141|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_17:193428..194077+ (Nannochloropsis oceanica)
ATGAGAGGCTTTAAGAGCGCCCTAGTACACACAATTTATCTCTCACTCTC
CGTTTCTTTATCTTCTCGTAATGAAGAAAAGACGGAAGAGCATTGCCCCC
CGCCCCTCGCTTCATTCCTTTGCATCTCTTCTGTTCACACACTTCGCCTC
CGCCTCCTCCTCCTTGTCTTTCCTGCGCCCTTTGTCACACACCAACAGTT
GTGGATAAATGAAAACATGTGGTCTCTCACTCACTTTTTCTTTCGGTTCT
TCCTACTTCCTTTATTTCTCCCTTCTTTCTCTTATTCACACGGTCGCCTT
CGCTCCTATACCAGGATGTTCTACTAAATGAGAGGCTTTAAGAGCGCCCT
AGTACACACAATTTATCTCTCACTCTCCGTTTCTTTATCTTCTCGTAATG
AAGAAAAGACGGAAGAGCATTGCCCCCCGCCCCTCGCTTCATTCCTTTGC
ATCTCTTCTGTTCACACACTTCGCCTCCGCCTCCTCCTCCTTGTCTTTCC
TGCGCCCTTTGTCACACACCAACAGTTGTGGATAAATGAAAACATGTGGT
CTCTCACTCACTTTTTCTTTCGGTTCTTCCTACTTCCTTTATTTCTCCCT
TCTTTCTCTTATTCACACGGTCGCCTTCGCTCCTATACCAGGATGTTCTA
CTAA
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Synonyms
Publications