jgi.p|Nanoce1779_2|596446, mRNA_6823 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596446
Unique Name	mRNA_6823
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1297
Alignment location	scaffold_17:191324..193240 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596532
Track	FilteredModels2
ProteinId	596446

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:191324..193240 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596446	gene_6823	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596446	mRNA_6823-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6823	CDS_6823	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:191324..193240+
coding sequence from alignment at scaffold_17:191324..193240+

mRNA sequence

>mRNA_6823 ID=mRNA_6823|Name=jgi.p|Nanoce1779_2|596446|organism=Nannochloropsis oceanica|type=mRNA|length=1297bp
ACAGCCTTTGGGTAACCCCTCCAAGAGGATGTTTTCTCGCGCGAAAGTGG
CCTTTAGGCGGGCCGCGGTCGTCCCGCCCGCCGTCAAGGAGGGTAAGGGC
AAGGTGATCGGTGCCCTGGTAGCAGGCACGGCAGTGGCAGGCGGGGTCGC
CGTGTGCAGTGCGGACCACGTCCCTTCGATTGATTACGGATGGAACCACC
ACGGTCTCCTGGCGTCGTATGACTACCCTGCCGTACGCCGCGGCTTCCAA
GTCTACCGCGAAGTCTGCGCATCTTGCCACGCCCTCGAGCACACCTACTT
TCGCAATCTGGTAGGGGTGACCCATTCCGAGGAGGAGGTGAAGAAGATTG
CTGAGGCGTATGATGTCATCGATGGCCCTAACGCCGAGGGAGAGATGTTT
GAGCGCCCTGGAAAGTTGTCCGACAAGATTCCGGGCCCCTACGCCAACAA
GGAAGCTGCCCGCGCTGCGAACAATGGAGCGTACCCTCCCGACCTCTCCC
TCATCACCAAGGCGCGTGGTGGTGGGGTTGACTACATTTTTGCGTTGCTG
ACTGGGTACATCGACCCCCCCGAGGGAAAGGCGATCCTTAGCGGGCTTAA
CTACAACCCGTACTTCCCTGGAGGAGCCATCGCGATGGCAAGGCAGCTTC
AAGACGGGCAGTTGGAGTACGAGGACGGGACGCCCGCCACAACCTCGCAG
ATGTCGAAGGACGTGGCTGTCTTCCTGGCTTGGGCTGCAGAGCCTGAACA
TGACTACAGGAAGAAGGCGGGTGTGCAGTGGATTGGGGCGTTGCTAGCTG
CTTTAGCCTTGACGGGTTTCTACAAGCGGTTCAGGTGGTCGACGCTGAAG
ACGGCCAAGTTCCATTATGTGGCGTAAGGGAGGGACGTAGGGAGGAAGGG
GTGTGGTGGGTGGCGCAGCATTGGTTGGGGTCTTGATCGGGTTTATGAGG
TCTCGGGGCTCGACGGTTCAGGCGGCTAAGTTTCGTCAAGGAGGGACCTT
CTACCTGTTAGCTCTGCCCGGTGGATGCATGTATGGTTGCCGATGCCCGA
TGGGTCTGTGTGTGGTTCAATGAGAGAGAGAGGCCGTATATAATAGAGGG
AGAGAGAAGATGGAAACCAAGACTTAAGGGATTGAAGGAGGGAGGGCGCC
AAAGATGATAAACGAATGGGAGTAAACGCCCGCATTTTAATAGATACCAG
CGGGAGTAAATACGAAGAAGGGAGACAAATCGATGGAGGAGTCCCCGGCC
GCAAGCAAAAACACTCAAAAAAAGAAGTCGGAAACACTTTCTTTAAA

protein sequence of jgi.p|Nanoce1779_2|596446

>mRNA_6823-protein ID=mRNA_6823-protein|Name=jgi.p|Nanoce1779_2|596446|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MFSRAKVAFRRAAVVPPAVKEGKGKVIGALVAGTAVAGGVAVCSADHVPS
IDYGWNHHGLLASYDYPAVRRGFQVYREVCASCHALEHTYFRNLVGVTHS
EEEVKKIAEAYDVIDGPNAEGEMFERPGKLSDKIPGPYANKEAARAANNG
AYPPDLSLITKARGGGVDYIFALLTGYIDPPEGKAILSGLNYNPYFPGGA
IAMARQLQDGQLEYEDGTPATTSQMSKDVAVFLAWAAEPEHDYRKKAGVQ
WIGALLAALALTGFYKRFRWSTLKTAKFHYVA*

mRNA from alignment at scaffold_17:191324..193240+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6823 ID=mRNA_6823|Name=jgi.p|Nanoce1779_2|596446|organism=Nannochloropsis oceanica|type=mRNA|length=1917bp|location=Sequence derived from alignment at scaffold_17:191324..193240+ (Nannochloropsis oceanica)
ACAGCCTTTGGGTAACCCCTCCAAGAGGATGTTTTCTCGCGCGAAAGTGG
CCTTTAGGCGGGCCGCGGTCGTCCCGCCCGCCGTCAAGGTATGTTGTTGG
GAGGGAGGAATCGAGGCGGATGACTACAGGGTTCTAGTATCGCACCGCGG
CAAATAGGATTGAGGCTTCGCATTCGATACCGCGTGCTCATGCTTGACCT
CTTCTACACACACGCACGTTACAATGCCTCCTAACGACCCATAGGAGGGT
AAGGGCAAGGTGATCGGTGCCCTGGTAGCAGGCACGGCAGTGGCAGGCGG
GGTCGCCGTGTGCAGTGCGGACCACGTCCCTTCGATTGATTACGGATGGA
ACCACCACGGTCTCCTGGCGTCGTATGACTACCCTGCGTAAGTTCTGCAG
CTAAGAGTGTCATGCTTGCCCGGAGGGTACTTTGGGGCGTCGAGAGTGGC
GTGACGTGCACGGGGTTCTTTTCTCTGAGGCCTTTTTTTTCCCGTGTGGC
AGGCTGCACCGCATCGGAGGATGTGGAGGAAGTGGAGCCATCGGTCTTGC
CTCGTTTGAATCTTTCTCGAGATCTACTGTTGTGACGCACATTTTTTTCG
ACTCCTACTTTCCTTTTCTGGTTCACCAAAAATTCACCTTTTTTCCCTCC
CTCTTCCCCTCCCTCCCTTCCTCGACACCTCACCTGCAGCGTACGCCGCG
GCTTCCAAGTCTACCGCGAAGTCTGCGCATCTTGCCACGCCCTCGAGCAC
ACCTACTTTCGCAATCTGGTAGGGGTGACCCATTCCGAGGAGGAGGTGAA
GAAGATTGCTGAGGCGTATGATGTCATCGATGGCCCTAACGCCGAGGGAG
AGATGTTTGAGCGCCCTGGAAAGGTACATCCTTCCCTCCCTTCCTCCCTT
CGTGTTCACTTGGATTTTCCTTCCCTTTTCCATAATATCTTGAGTCGTAT
ATCTCTTTCTAACGTGACACTTGCCCCCTCCCCCCTCCCCCCTCCCTACC
TCCCTCCCTCCCTGCCTCCCTGTGCCTTCCTTCAGTTGTCCGACAAGATT
CCGGGCCCCTACGCCAACAAGGAAGCTGCCCGCGCTGCGAACAATGGAGC
GTACCCTCCCGACCTCTCCCTCATCACCAAGGCGCGTGGTGGTGGGGTTG
ACTACATTTTTGCGTTGCTGACTGGGTACATCGACCCCCCCGAGGGAAAG
GCGATCCTTAGCGGGCTTAACTACAACCCGTACTTCCCTGGAGGAGCCAT
CGCGATGGCAAGGCAGCTTCAAGACGGGCAGTTGGAGTACGAGGACGGGA
CGCCCGCCACAACCTCGCAGATGTCGAAGGACGTGGCTGTCTTCCTGGCT
TGGGCTGCAGAGCCTGAACATGACTACAGGAAGAAGGCGGGTGTGCAGTG
GATTGGGGCGTTGCTAGCTGCTTTAGCCTTGACGGGTTTCTACAAGCGGT
TCAGGTGGTCGACGCTGAAGACGGCCAAGTTCCATTATGTGGCGTAAGGG
AGGGACGTAGGGAGGAAGGGGTGTGGTGGGTGGCGCAGCATTGGTTGGGG
TCTTGATCGGGTTTATGAGGTCTCGGGGCTCGACGGTTCAGGCGGCTAAG
TTTCGTCAAGGAGGGACCTTCTACCTGTTAGCTCTGCCCGGTGGATGCAT
GTATGGTTGCCGATGCCCGATGGGTCTGTGTGTGGTTCAATGAGAGAGAG
AGGCCGTATATAATAGAGGGAGAGAGAAGATGGAAACCAAGACTTAAGGG
ATTGAAGGAGGGAGGGCGCCAAAGATGATAAACGAATGGGAGTAAACGCC
CGCATTTTAATAGATACCAGCGGGAGTAAATACGAAGAAGGGAGACAAAT
CGATGGAGGAGTCCCCGGCCGCAAGCAAAAACACTCAAAAAAAGAAGTCG
GAAACACTTTCTTTAAA

Coding sequence (CDS) from alignment at scaffold_17:191324..193240+

>mRNA_6823 ID=mRNA_6823|Name=jgi.p|Nanoce1779_2|596446|organism=Nannochloropsis oceanica|type=CDS|length=3396bp|location=Sequence derived from alignment at scaffold_17:191324..193240+ (Nannochloropsis oceanica)
ATGTTTTCTCGCGCGAAAGTGGCCTTTAGGCGGGCCGCGGTCGTCCCGCC
CGCCGTCAAGGAGGGTAAGGGCAAGGTGATCGGTGCCCTGGTAGCAGGCA
CGGCAGTGGCAGGCGGGGTCGCCGTGTGCAGTGCGGACCACGTCCCTTCG
ATTGATTACGGATGGAACCACCACGGTCTCCTGGCGTCGTATGACTACCC
TGCCGTACGCCGCGGCTTCCAAGTCTACCGCGAAGTCTGCGCATCTTGCC
ACGCCCTCGAGCACACCTACTTTCGCAATCTGGTAGGGGTGACCCATTCC
GAGGAGGAGGTGAAGAAGATTGCTGAGGCGTATGATGTCATCGATGGCCC
TAACGCCGAGGGAGAGATGTTTGAGCGCCCTGGAAAGTTGTCCGACAAGA
TTCCGGGCCCCTACGCCAACAAGGAAGCTGCCCGCGCTGCGAACAATGGA
GCGTACCCTCCCGACCTCTCCCTCATCACCAAGGCGCGTGGTGGTGGGGT
TGACTACATTTTTGCGTTGCTGACTGGGTACATCGACCCCCCCGAGGGAA
AGGCGATCCTTAGCGGGCTTAACTACAACCCGTACTTCCCTGGAGGAGCC
ATCGCGATGGCAAGGCAGCTTCAAGACGGGCAGTTGGAGTACGAGGACGG
GACGCCCGCCACAACCTCGCAGATGTCGAAGGACGTGGCTGTCTTCCTGG
CTTGGGCTGCAGAGCCTGAACATGACTACAGGAAGAAGGCGGGTGTGCAG
TGGATTGGGGCGTTGCTAGCTGCTTTAGCCTTGACGGGTTTCTACAAGCG
GTTCAGGTGGTCGACGCTGAAGACGGCCAAGTTCCATTATGTGGCGTAAA
TGTTTTCTCGCGCGAAAGTGGCCTTTAGGCGGGCCGCGGTCGTCCCGCCC
GCCGTCAAGGAGGGTAAGGGCAAGGTGATCGGTGCCCTGGTAGCAGGCAC
GGCAGTGGCAGGCGGGGTCGCCGTGTGCAGTGCGGACCACGTCCCTTCGA
TTGATTACGGATGGAACCACCACGGTCTCCTGGCGTCGTATGACTACCCT
GCCGTACGCCGCGGCTTCCAAGTCTACCGCGAAGTCTGCGCATCTTGCCA
CGCCCTCGAGCACACCTACTTTCGCAATCTGGTAGGGGTGACCCATTCCG
AGGAGGAGGTGAAGAAGATTGCTGAGGCGTATGATGTCATCGATGGCCCT
AACGCCGAGGGAGAGATGTTTGAGCGCCCTGGAAAGTTGTCCGACAAGAT
TCCGGGCCCCTACGCCAACAAGGAAGCTGCCCGCGCTGCGAACAATGGAG
CGTACCCTCCCGACCTCTCCCTCATCACCAAGGCGCGTGGTGGTGGGGTT
GACTACATTTTTGCGTTGCTGACTGGGTACATCGACCCCCCCGAGGGAAA
GGCGATCCTTAGCGGGCTTAACTACAACCCGTACTTCCCTGGAGGAGCCA
TCGCGATGGCAAGGCAGCTTCAAGACGGGCAGTTGGAGTACGAGGACGGG
ACGCCCGCCACAACCTCGCAGATGTCGAAGGACGTGGCTGTCTTCCTGGC
TTGGGCTGCAGAGCCTGAACATGACTACAGGAAGAAGGCGGGTGTGCAGT
GGATTGGGGCGTTGCTAGCTGCTTTAGCCTTGACGGGTTTCTACAAGCGG
TTCAGGTGGTCGACGCTGAAGACGGCCAAGTTCCATTATGTGGCGTAAAT
GTTTTCTCGCGCGAAAGTGGCCTTTAGGCGGGCCGCGGTCGTCCCGCCCG
CCGTCAAGGAGGGTAAGGGCAAGGTGATCGGTGCCCTGGTAGCAGGCACG
GCAGTGGCAGGCGGGGTCGCCGTGTGCAGTGCGGACCACGTCCCTTCGAT
TGATTACGGATGGAACCACCACGGTCTCCTGGCGTCGTATGACTACCCTG
CCGTACGCCGCGGCTTCCAAGTCTACCGCGAAGTCTGCGCATCTTGCCAC
GCCCTCGAGCACACCTACTTTCGCAATCTGGTAGGGGTGACCCATTCCGA
GGAGGAGGTGAAGAAGATTGCTGAGGCGTATGATGTCATCGATGGCCCTA
ACGCCGAGGGAGAGATGTTTGAGCGCCCTGGAAAGTTGTCCGACAAGATT
CCGGGCCCCTACGCCAACAAGGAAGCTGCCCGCGCTGCGAACAATGGAGC
GTACCCTCCCGACCTCTCCCTCATCACCAAGGCGCGTGGTGGTGGGGTTG
ACTACATTTTTGCGTTGCTGACTGGGTACATCGACCCCCCCGAGGGAAAG
GCGATCCTTAGCGGGCTTAACTACAACCCGTACTTCCCTGGAGGAGCCAT
CGCGATGGCAAGGCAGCTTCAAGACGGGCAGTTGGAGTACGAGGACGGGA
CGCCCGCCACAACCTCGCAGATGTCGAAGGACGTGGCTGTCTTCCTGGCT
TGGGCTGCAGAGCCTGAACATGACTACAGGAAGAAGGCGGGTGTGCAGTG
GATTGGGGCGTTGCTAGCTGCTTTAGCCTTGACGGGTTTCTACAAGCGGT
TCAGGTGGTCGACGCTGAAGACGGCCAAGTTCCATTATGTGGCGTAAATG
TTTTCTCGCGCGAAAGTGGCCTTTAGGCGGGCCGCGGTCGTCCCGCCCGC
CGTCAAGGAGGGTAAGGGCAAGGTGATCGGTGCCCTGGTAGCAGGCACGG
CAGTGGCAGGCGGGGTCGCCGTGTGCAGTGCGGACCACGTCCCTTCGATT
GATTACGGATGGAACCACCACGGTCTCCTGGCGTCGTATGACTACCCTGC
CGTACGCCGCGGCTTCCAAGTCTACCGCGAAGTCTGCGCATCTTGCCACG
CCCTCGAGCACACCTACTTTCGCAATCTGGTAGGGGTGACCCATTCCGAG
GAGGAGGTGAAGAAGATTGCTGAGGCGTATGATGTCATCGATGGCCCTAA
CGCCGAGGGAGAGATGTTTGAGCGCCCTGGAAAGTTGTCCGACAAGATTC
CGGGCCCCTACGCCAACAAGGAAGCTGCCCGCGCTGCGAACAATGGAGCG
TACCCTCCCGACCTCTCCCTCATCACCAAGGCGCGTGGTGGTGGGGTTGA
CTACATTTTTGCGTTGCTGACTGGGTACATCGACCCCCCCGAGGGAAAGG
CGATCCTTAGCGGGCTTAACTACAACCCGTACTTCCCTGGAGGAGCCATC
GCGATGGCAAGGCAGCTTCAAGACGGGCAGTTGGAGTACGAGGACGGGAC
GCCCGCCACAACCTCGCAGATGTCGAAGGACGTGGCTGTCTTCCTGGCTT
GGGCTGCAGAGCCTGAACATGACTACAGGAAGAAGGCGGGTGTGCAGTGG
ATTGGGGCGTTGCTAGCTGCTTTAGCCTTGACGGGTTTCTACAAGCGGTT
CAGGTGGTCGACGCTGAAGACGGCCAAGTTCCATTATGTGGCGTAA

Synonyms

Publications