jgi.p|Nanoce1779_2|596439, mRNA_6822 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596439
Unique Name	mRNA_6822
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1111
Alignment location	scaffold_17:188985..190872 -

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Properties


Property Name	Value
TranscriptId	596525
Track	FilteredModels2
ProteinId	596439

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:188985..190872 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596439	gene_6822	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596439	mRNA_6822-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6822	CDS_6822	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:188985..190872-
coding sequence from alignment at scaffold_17:188985..190872-

mRNA sequence

>mRNA_6822 ID=mRNA_6822|Name=jgi.p|Nanoce1779_2|596439|organism=Nannochloropsis oceanica|type=mRNA|length=1111bp
ACAGCAATCTATCTATCAACATCATGAAGACCTACTGCGTCGTCCTCGGG
GCCGCATCCCTTGCCGTGGCAAGCCACGCCTTTCTGATGGGCAACCCCTT
GAAAGCTGCACCCAAGGCTGCTGCTTGCTCATCCACCACCTGCATGGCCG
TCACCCTGCCGGCCCTTCCCTACGCCGACACCGCCCTGGAACCCTTGATC
TCCAAGAGGACCTTGGACATCCACCATGGGAAGCACCACGCCAAGTACGT
GACGGTGACGAACGAGATGATCAAGGGCACCGACCTCGAGAATGCCTCGT
TGGAGGAGATCGTTAAGGCGGCTAAGGGCAAGAACCAGGGTCTGTTCAAC
AACGCCGCGCAGGTCTGGAACCACAACTTTTACTGGAACTGCCTCAAGCC
CAATGGTGGGGGCGTGCCCACGGGCAAGATTGCAGCCTTGATTGATCGGG
ACTTGGGGGGTTACGAGGCTTTCAGGAAGCAGTTCGCGGCAGACTCGAAC
GGGAACTTCGGAAGTGGGTGGACCTGGTTGGCGATGAAGGGTGACAAGCT
TCAGATCGTCAAGACTAGCAATGCCGATGTTCCCATTACGGACGGGATGA
CGCCCCTGCTGGTGATTGATGTGTGGGAGCACGCGTATTACCTGGACGTG
CAGAACGTGCGCGCGCAGTACGTGGACAACTTTCTCGATAAGCTCGTCAA
CTGGGACTTCGTCAATTCCAACCTTGCCTAAATCAAGAGGATGGTGACTC
GCTAGTCCCGTCTCTTCTCTCGCTTCTTCTACGGAAGGAGGAGGGAGTAT
GAGGAAGGAGGACGAAGACCCGAATGACTCTTGAAGACACAAGGAATGGA
GGAGGGAAGGAGGAAATGCATCTGAGGGAGCTGATGTTTCTCATAAAATG
TGTGGCGGCATGAAGAAGAATATGTATTTGCCCCCCCTTTGTGCGTGCCG
GAATGACTGAAGGACTTTTTTGGGAATGTTACAGACTAAAGCGATTCTGG
AGTGAGACTAGGGTGAAAGTTAGGCTTAAGGCATTGAGATGTAACGGGCA
AAGCGGTGGATGACGGACAAAAAGAGAAATGAGAAAGAGATGCCTCGAGC
ATTTAGTAGAA

protein sequence of jgi.p|Nanoce1779_2|596439

>mRNA_6822-protein ID=mRNA_6822-protein|Name=jgi.p|Nanoce1779_2|596439|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MKTYCVVLGAASLAVASHAFLMGNPLKAAPKAAACSSTTCMAVTLPALPY
ADTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAA
KGKNQGLFNNAAQVWNHNFYWNCLKPNGGGVPTGKIAALIDRDLGGYEAF
RKQFAADSNGNFGSGWTWLAMKGDKLQIVKTSNADVPITDGMTPLLVIDV
WEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNSNLA*

mRNA from alignment at scaffold_17:188985..190872-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6822 ID=mRNA_6822|Name=jgi.p|Nanoce1779_2|596439|organism=Nannochloropsis oceanica|type=mRNA|length=1888bp|location=Sequence derived from alignment at scaffold_17:188985..190872- (Nannochloropsis oceanica)
ACAGCAATCTATCTATCAACATCATGAAGACCTACTGCGTCGTCCTCGGG
GCCGCATCCCTTGCCGTGGCAAGCCACGCCTTTCTGATGGGCAACCCCTT
GAAAGCTGCACCCAAGGCTGCTGCTTGCTCATCCACCACCTGCATGGCCG
TCACCCTGCCGGCCCTTCCCTGTGAGTGCAACCTTGTTACTGCTGACAGG
GATTATTACAGAGCATGTCCTCGTACTTATTCTGGAACAAAAGCGTGATT
CAGTGATCCGTCCCGATCTCTAATTAGATGATCAGGCTTATCTCCAGCTC
ATATATTTTAATCATGTGACACAGATACCTCATGTTCCCCCTTGCCCTCC
CGACCTTCCCTTTCTCGACCTTCCCTCCCCTTCCTCTAGACGCCGACACC
GCCCTGGAACCCTTGATCTCCAAGAGGACCTTGGACATCCACCATGGGAA
GCACCACGCCAAGTACGTGACGGTGACGAACGAGATGATCAAGGGCACCG
ACCTCGAGAATGCCTCGTTGGAGGAGATCGTTAAGGCGGCTAAGGGTGAG
TTGAAAGGAGGTGGGAGTTAAACGGAAGGAGGGAGCAAGAGCTCAGACGG
AATGCTTATGGAGAAGCAAAAGAGGGCATAAAATAGTTGATTTCCTCAGT
GATGATACAATTTCCTCTCAGCGTACGACAAAAAATTTCTCGCCCCCGTA
TTATTTCCTCGTAGGCAAGAACCAGGGTCTGTTCAACAACGCCGCGCAGG
TCTGGAACCACAACTTTTACTGGAACTGCCTCAAGCCCAATGGTGGGGGC
GTGCCCACGGGCAAGATTGCAGCCTTGATTGATCGGGACTTGGGGGGTTA
CGAGGCTTTCAGGTAAGATATGCAAACACAGAGTGGGATAGTGAATGAAC
GATAGCCTCTCGGTTGTTCTTCATTCGGGTTGCCTTCTTGCCTTTATGTT
GCCGTCATCCACCGTCGACAAGAGATAATGAAGGTGAATGGATGATAAGC
TCGTCTTCCTTTGTGCCTTCCTTCTTCCACCCCACATCCCTGGACAAAAC
CGCAAAAAAAGAATGAAGCAACGTGAATTCTCACAAAATCGACACACCCA
TACATTGCATAACTAACTTGCAGGAAGCAGTTCGCGGCAGACTCGAACGG
GAACTTCGGAAGTGGGTGGACCTGGTTGGCGATGAAGGGTGACAAGCTTC
AGATCGTCAAGACTAGCAATGCCGATGTTCCCATTACGGACGGGATGGTG
AGTGCTTGGGAAGGGCAAGTGGAAAAAATATATCATAATTCGCTAAACTG
CTGACGATTGAAGTTCTCGTAAATTACCATATATTCATTCTTGTTTTTCC
CCTCTCCTCCCTCCCTCCCGCCTAAGACGCCCCTGCTGGTGATTGATGTG
TGGGAGCACGCGTATTACCTGGACGTGCAGAACGTGCGCGCGCAGTACGT
GGACAACTTTCTCGATAAGCTCGTCAACTGGGACTTCGTCAATTCCAACC
TTGCCTAAATCAAGAGGATGGTGACTCGCTAGTCCCGTCTCTTCTCTCGC
TTCTTCTACGGAAGGAGGAGGGAGTATGAGGAAGGAGGACGAAGACCCGA
ATGACTCTTGAAGACACAAGGAATGGAGGAGGGAAGGAGGAAATGCATCT
GAGGGAGCTGATGTTTCTCATAAAATGTGTGGCGGCATGAAGAAGAATAT
GTATTTGCCCCCCCTTTGTGCGTGCCGGAATGACTGAAGGACTTTTTTGG
GAATGTTACAGACTAAAGCGATTCTGGAGTGAGACTAGGGTGAAAGTTAG
GCTTAAGGCATTGAGATGTAACGGGCAAAGCGGTGGATGACGGACAAAAA
GAGAAATGAGAAAGAGATGCCTCGAGCATTTAGTAGAA

Coding sequence (CDS) from alignment at scaffold_17:188985..190872-

>mRNA_6822 ID=mRNA_6822|Name=jgi.p|Nanoce1779_2|596439|organism=Nannochloropsis oceanica|type=CDS|length=3540bp|location=Sequence derived from alignment at scaffold_17:188985..190872- (Nannochloropsis oceanica)
ACGCCCCTGCTGGTGATTGATGTGTGGGAGCACGCGTATTACCTGGACGT
GCAGAACGTGCGCGCGCAGTACGTGGACAACTTTCTCGATAAGCTCGTCA
ACTGGGACTTCGTCAATTCCAACCTTGCCTAAGAAGCAGTTCGCGGCAGA
CTCGAACGGGAACTTCGGAAGTGGGTGGACCTGGTTGGCGATGAAGGGTG
ACAAGCTTCAGATCGTCAAGACTAGCAATGCCGATGTTCCCATTACGGAC
GGGATGGCAAGAACCAGGGTCTGTTCAACAACGCCGCGCAGGTCTGGAAC
CACAACTTTTACTGGAACTGCCTCAAGCCCAATGGTGGGGGCGTGCCCAC
GGGCAAGATTGCAGCCTTGATTGATCGGGACTTGGGGGGTTACGAGGCTT
TCAGACGCCGACACCGCCCTGGAACCCTTGATCTCCAAGAGGACCTTGGA
CATCCACCATGGGAAGCACCACGCCAAGTACGTGACGGTGACGAACGAGA
TGATCAAGGGCACCGACCTCGAGAATGCCTCGTTGGAGGAGATCGTTAAG
GCGGCTAAGGATGAAGACCTACTGCGTCGTCCTCGGGGCCGCATCCCTTG
CCGTGGCAAGCCACGCCTTTCTGATGGGCAACCCCTTGAAAGCTGCACCC
AAGGCTGCTGCTTGCTCATCCACCACCTGCATGGCCGTCACCCTGCCGGC
CCTTCCCTACGCCCCTGCTGGTGATTGATGTGTGGGAGCACGCGTATTAC
CTGGACGTGCAGAACGTGCGCGCGCAGTACGTGGACAACTTTCTCGATAA
GCTCGTCAACTGGGACTTCGTCAATTCCAACCTTGCCTAAGAAGCAGTTC
GCGGCAGACTCGAACGGGAACTTCGGAAGTGGGTGGACCTGGTTGGCGAT
GAAGGGTGACAAGCTTCAGATCGTCAAGACTAGCAATGCCGATGTTCCCA
TTACGGACGGGATGGCAAGAACCAGGGTCTGTTCAACAACGCCGCGCAGG
TCTGGAACCACAACTTTTACTGGAACTGCCTCAAGCCCAATGGTGGGGGC
GTGCCCACGGGCAAGATTGCAGCCTTGATTGATCGGGACTTGGGGGGTTA
CGAGGCTTTCAGACGCCGACACCGCCCTGGAACCCTTGATCTCCAAGAGG
ACCTTGGACATCCACCATGGGAAGCACCACGCCAAGTACGTGACGGTGAC
GAACGAGATGATCAAGGGCACCGACCTCGAGAATGCCTCGTTGGAGGAGA
TCGTTAAGGCGGCTAAGGATGAAGACCTACTGCGTCGTCCTCGGGGCCGC
ATCCCTTGCCGTGGCAAGCCACGCCTTTCTGATGGGCAACCCCTTGAAAG
CTGCACCCAAGGCTGCTGCTTGCTCATCCACCACCTGCATGGCCGTCACC
CTGCCGGCCCTTCCCTACGCCCCTGCTGGTGATTGATGTGTGGGAGCACG
CGTATTACCTGGACGTGCAGAACGTGCGCGCGCAGTACGTGGACAACTTT
CTCGATAAGCTCGTCAACTGGGACTTCGTCAATTCCAACCTTGCCTAAGA
AGCAGTTCGCGGCAGACTCGAACGGGAACTTCGGAAGTGGGTGGACCTGG
TTGGCGATGAAGGGTGACAAGCTTCAGATCGTCAAGACTAGCAATGCCGA
TGTTCCCATTACGGACGGGATGGCAAGAACCAGGGTCTGTTCAACAACGC
CGCGCAGGTCTGGAACCACAACTTTTACTGGAACTGCCTCAAGCCCAATG
GTGGGGGCGTGCCCACGGGCAAGATTGCAGCCTTGATTGATCGGGACTTG
GGGGGTTACGAGGCTTTCAGACGCCGACACCGCCCTGGAACCCTTGATCT
CCAAGAGGACCTTGGACATCCACCATGGGAAGCACCACGCCAAGTACGTG
ACGGTGACGAACGAGATGATCAAGGGCACCGACCTCGAGAATGCCTCGTT
GGAGGAGATCGTTAAGGCGGCTAAGGATGAAGACCTACTGCGTCGTCCTC
GGGGCCGCATCCCTTGCCGTGGCAAGCCACGCCTTTCTGATGGGCAACCC
CTTGAAAGCTGCACCCAAGGCTGCTGCTTGCTCATCCACCACCTGCATGG
CCGTCACCCTGCCGGCCCTTCCCTACGCCCCTGCTGGTGATTGATGTGTG
GGAGCACGCGTATTACCTGGACGTGCAGAACGTGCGCGCGCAGTACGTGG
ACAACTTTCTCGATAAGCTCGTCAACTGGGACTTCGTCAATTCCAACCTT
GCCTAAGAAGCAGTTCGCGGCAGACTCGAACGGGAACTTCGGAAGTGGGT
GGACCTGGTTGGCGATGAAGGGTGACAAGCTTCAGATCGTCAAGACTAGC
AATGCCGATGTTCCCATTACGGACGGGATGGCAAGAACCAGGGTCTGTTC
AACAACGCCGCGCAGGTCTGGAACCACAACTTTTACTGGAACTGCCTCAA
GCCCAATGGTGGGGGCGTGCCCACGGGCAAGATTGCAGCCTTGATTGATC
GGGACTTGGGGGGTTACGAGGCTTTCAGACGCCGACACCGCCCTGGAACC
CTTGATCTCCAAGAGGACCTTGGACATCCACCATGGGAAGCACCACGCCA
AGTACGTGACGGTGACGAACGAGATGATCAAGGGCACCGACCTCGAGAAT
GCCTCGTTGGAGGAGATCGTTAAGGCGGCTAAGGATGAAGACCTACTGCG
TCGTCCTCGGGGCCGCATCCCTTGCCGTGGCAAGCCACGCCTTTCTGATG
GGCAACCCCTTGAAAGCTGCACCCAAGGCTGCTGCTTGCTCATCCACCAC
CTGCATGGCCGTCACCCTGCCGGCCCTTCCCTACGCCCCTGCTGGTGATT
GATGTGTGGGAGCACGCGTATTACCTGGACGTGCAGAACGTGCGCGCGCA
GTACGTGGACAACTTTCTCGATAAGCTCGTCAACTGGGACTTCGTCAATT
CCAACCTTGCCTAAGAAGCAGTTCGCGGCAGACTCGAACGGGAACTTCGG
AAGTGGGTGGACCTGGTTGGCGATGAAGGGTGACAAGCTTCAGATCGTCA
AGACTAGCAATGCCGATGTTCCCATTACGGACGGGATGGCAAGAACCAGG
GTCTGTTCAACAACGCCGCGCAGGTCTGGAACCACAACTTTTACTGGAAC
TGCCTCAAGCCCAATGGTGGGGGCGTGCCCACGGGCAAGATTGCAGCCTT
GATTGATCGGGACTTGGGGGGTTACGAGGCTTTCAGACGCCGACACCGCC
CTGGAACCCTTGATCTCCAAGAGGACCTTGGACATCCACCATGGGAAGCA
CCACGCCAAGTACGTGACGGTGACGAACGAGATGATCAAGGGCACCGACC
TCGAGAATGCCTCGTTGGAGGAGATCGTTAAGGCGGCTAAGGATGAAGAC
CTACTGCGTCGTCCTCGGGGCCGCATCCCTTGCCGTGGCAAGCCACGCCT
TTCTGATGGGCAACCCCTTGAAAGCTGCACCCAAGGCTGCTGCTTGCTCA
TCCACCACCTGCATGGCCGTCACCCTGCCGGCCCTTCCCT

Synonyms

Publications