jgi.p|Nanoce1779_2|596438, mRNA_6821 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596438
Unique Name	mRNA_6821
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3790
Alignment location	scaffold_17:184858..188747 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596524
Track	FilteredModels2
ProteinId	596438

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:184858..188747 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596438	gene_6821	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596438	mRNA_6821-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6821	CDS_6821	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:184858..188747-
coding sequence from alignment at scaffold_17:184858..188747-

mRNA sequence

>mRNA_6821 ID=mRNA_6821|Name=jgi.p|Nanoce1779_2|596438|organism=Nannochloropsis oceanica|type=mRNA|length=3790bp
CAGCCGAAACAGAGATGGAGCATCGCAGCAGCCTCCTGGACGATATTGAT
AAGATTGTGTGGAGCGCTGTGGGTGCCATCTTAGATTCGTCTTTCTACTC
CTCGAAAAAGGTAAATGACTGGATGCATACAATTTTGGATGCCTGTCTGC
GGGACCTTGTGGCCTTAAATCGGCCAAGCAAGTACTTGCTCTCGTGCGTG
CTCTCCCAAAAAAATGGGGCCGGCTTTCGCTCTGTCGCGTCGCAATATTG
GGATGGACGGTCGGATTTCACTCGTGCCGTAAGTTGGGAGAATGATCATA
TACATTGTCTCGTCACGATCCACGCCATTGCTTTGCATTTGACGGGATAT
GTCTCAAGCGGGAATGGCGGGGGGGCGACGGGCGCAGGTGCGATGGTCTC
GCAAGCGCCGCCTGCGCAATCCCAAGAAATGACTAGCACGGACCACTCAC
ATCAGCAAAATACAGATCAAGACAGAATTGTGCAACCTGTGGCCACCGGA
GAGGCTGGATGGGAGTGATGGTCGATATGCAGAGCAAAATTAGTTTCTAC
TCGGTTCTGCTTGCTTTTGTTGAGTTTTCTTCTCCCCACCCCTCATCCTC
TTGTGCACATAATTCTGCCGTCATGGCGCTCTGCTTGCCACTCACTTTTT
CTTTCTTCAAATTGTGGTGTGAATATGGTATGCAAGTGGCGTTCTATCAG
CGTTTTGGCGTTTAAATTTTTATTGCTTAGTTCCCTACAAGGCTGTGTAC
CACAGCGCAACTCATTCTGAAGCCACGGGTTTCACATTTCCTTGCACAGT
CCTTAAAGGTTGAAGCCTCTCAGTCAATCATTGTAAGAAAAAGTGTGCGT
CCTAAATGATTCAAGGTCGAGCTTTGTCCTATTCGATTTCTTTGCCATAC
TTTGTTATGTTCATTCATGCAGAAATCTTGTACAAGTCATTCTTTTATTT
ATCTAACTTCTAACCTCAAGGCACTGCCCTACATCCCATCACCAACCCTT
ATACTAATGCCTTTGTTTAAGGCTCTTGAGTCTTTTGCCGGCACTGCTCT
CATCATACTCCATCCCCGGCGTGATCAATCTCTCGCCACTCCTCCCTTCC
TCCTACTCTCACCCTCCTTGCATTCACGACGACCGCCCCACTACCGTCCC
CACCACCAATAGGGGGGTCGTAGATTTCTCTACAAAGTCCTTTACCGCCA
CGCCGCCCGCCTCCATCCCCTCGTCCAAAAATATCGTCCTATACTCTGCA
ATCCGCAACTTGCTCCTCTTTAATGCCGCGGTCACCGTCGTCACATCCTT
CGAGAAAGTCCCCACAGCCAACAGACACTCATAATCTCTCAACTCCACGC
ATATCCTACCCAAAATCGACAACCTTTCCTCCACCGTACACGCCTTCTTT
CTCCTTCCTGTTTCTTCAGTAGCCGTCGTTGCAGCTGTCGCTGCTGCTGC
TGCTCCGGAAGGGGAGGCAGTGGCAAATTGCTCGCGGATCGCAAGGAAGG
TATCCAACACAACCTCCGACGGTGCCTCAAAGCGGGCCCAGGGCCACTGC
GAGGATGTCCAAGCGTGCTGTTGCCACTTTCTGGCGTCATTCCTGCTGCC
AGTACTGTTAGTGGTACTGGCACTGCTGCTGAAGCTCGTGGTGCCCGGGC
TCATCCAGGGCTGGAGGGAGGGAAAGGGGACCCGGCGGAGGTCGCCTCCA
CCGAGGAGCAGCAACGAGTCAACTAGCTCTCGCAAGCGAAGCGTGGCCAG
GCACATAGATGCAAACAGGGTCAAGACTTCCGTCCCCGATCCCGCGTGTT
GCAATAAGTCGAAATCTGCCAAGGACGAGGAAGACGAAGAGGAAGGATTT
GATTCAGGCGCATCTGGCTCAGACATCCATCCATACCCTCTTCCTCCTCC
TCCTCCCCTCGCGGCACCAACGGAAGCAACCGTCCCAGGTAAATGTTCCA
GAAACTCATTCAGCGGACGCGAAATCGGGTTTACACTCCCTGCACGCGAG
GCTGGCGCTGACGACAGACCTTTCTCGTTTTGGCCACCACCTCCTCCTAC
ATCGCTACCCGCCCCCGACGGCGCGCCCAATACCCCGAAAGTCGCGCGGT
ACAACAAATCCACCAGTGACCTACTGCCTCCCTCCGAACCATTTACTGCC
TCGCATCCTCTCCCTCCCCCTCCAGCCTCGCTCAAAAACCGCGCTTCCTG
GTCATACAGCTTCAGAGCCTCTTCTCTCTTCTGAATGAACCGCCACAGTT
GCTTCAGCATCTGCCACTCCTTCTTCCCCCTCCTCAGCGCCTCCCACAGC
AGACGTAAAGCCAATCCATGGACCAACTTCAAATCTTGCATTTCCTCCCA
GTTCGCCAACAGCCGCGCCCGTCGATCAGTCGATGGGAAAAGCAGCCCCC
CTCCTCCTCCCCTGCCTCCGTCCCTCCCCGGGGGGTCAATCAATGGTAAG
TAAAGCAATGCCGTATGCATCTTTTTTGTTGCCAGGCATTTCTCAAATAA
AGTCACCGGCGTATCCCCAAAGCCTTGTTCGTCGAGATCAGGTAAGGGGA
AAATGTATTTGAGGCGAGAGGGTTCAATTTTCCGCGCGACTCGGACGATG
ACCTCATAAAATAAATCTAGCCCCGCCTCCCGTCGACAGAGGGCAAGAGC
GGCCTTGACTTGTTCCGTGCTGGCCGAAAAAGAGGTGAAATAAGAAGAGA
TGCCTGCAGTGAATTCAGCGATTCGAAGGTTGGTGGTGCTGGTGGAGGAT
AGTCCCAAACCCTGTTTCTTTGATCGCGGGTGAGCCTTGGCCAGTGCTTC
AATGCACGAACGAAGGAGAAAATCCAGAGCATCCGCAAGCTGGATACGAG
TCTCGGGTTGAGAATAAAGTTCATCAAACACACCAGCCACTACACCACCG
ACTGCGTTGGCTGCTGCATTGCTGCTGGTGCGGGTGTCAGTAGAAGCAGC
AGCAATAGCAGCAGCACTGGTAGCGGTGTTGTTGGAAAAAGACAACTTTG
CCTCCACGCCATTCCTCATGTCGCTGTTGCGGCATTCCTCCGTCGATGAC
GACGCAGATAGAGATACCTTGAAACCCCCAATCTTCCCTTCTCCTCCTCC
CCCGTTTCTCTCGGCTTTACTTCCTCCCTCCTTTCTCTCTAACAACATAC
TCTGCAAAAACAACAAAAAACGAAATGCTATCTGATAAATTGGCCGCCGT
TGTAGACCTACTTCAAAACGTGGAGGAATAGGCGGCCCTCCATTCGAGGC
CGCATACTTTAGCGAAGCTTGCGGTTGAATGCAGGACTGCGTCAGGAAAA
TAAGAGAGGAGGTAGGGCCATGGATGCCCATTATCACTCCTTCCACGTCG
GGATTGAAGGTAGGATCAAGGAAAGGTAGCTGGCAGGCTTCTCGGGTGAG
TAGGAGGGATTTGGGCTCGCTGAGGGTAAGAGAGGGAAGCCAGAGGGAAA
ACCCCTGTTCACCACAGTAGAGAACATAGCAGGGGTGCATGGCTTTCTCT
TCTGTGGGGAGAACGAGCTCCCACAAGCTACTGACGCCCTTGGCAATGAG
TGTTGTGACGGCTGATTTGATTTCGACTTGGTAAAGACTTCCCGTGGAGG
AGAGGACAGCCACGGCTCGAGGGCTGACGTTGGGGAGGAGGATGATCCGC
CGGGGGGTTTCGCCCCTGCCCAGGGCTTGGACGGGGCCTGGAGTAAGGGA
GGTTGTAACAGCAGTGGCAGCAGCAGCGGTAGCAGGAGCAGGAGCAGCAG
TTGTTGCTCCGCCTGAATGGAGTGGTATTTTTAAGTCACG

protein sequence of jgi.p|Nanoce1779_2|596438

>mRNA_6821-protein ID=mRNA_6821-protein|Name=jgi.p|Nanoce1779_2|596438|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MEHRSSLLDDIDKIVWSAVGAILDSSFYSSKKVNDWMHTILDACLRDLVA
LNRPSKYLLSCVLSQKNGAGFRSVASQYWDGRSDFTRAVSWENDHIHCLV
TIHAIALHLTGYVSSGNGGGATGAGAMVSQAPPAQSQEMTSTDHSHQQNT
DQDRIVQPVATGEAGWE*

mRNA from alignment at scaffold_17:184858..188747-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6821 ID=mRNA_6821|Name=jgi.p|Nanoce1779_2|596438|organism=Nannochloropsis oceanica|type=mRNA|length=3890bp|location=Sequence derived from alignment at scaffold_17:184858..188747- (Nannochloropsis oceanica)
CAGCCGAAACAGAGATGGAGCATCGCAGCAGCCTCCTGGACGATATTGAT
AAGATTGTGTGGAGCGCTGTGGGTGCCATCTTAGATTCGTCTTTCTACTC
CTCGAAAAAGGTGAGCAAATCTCAGCCCATACCCTCCTCCAAGCCAAAAT
TACTGTCAGGCCTATGACAATCAACTCCAAACACTACCGAACTATTTCCC
TTCTTCGCAGGTAAATGACTGGATGCATACAATTTTGGATGCCTGTCTGC
GGGACCTTGTGGCCTTAAATCGGCCAAGCAAGTACTTGCTCTCGTGCGTG
CTCTCCCAAAAAAATGGGGCCGGCTTTCGCTCTGTCGCGTCGCAATATTG
GGATGGACGGTCGGATTTCACTCGTGCCGTAAGTTGGGAGAATGATCATA
TACATTGTCTCGTCACGATCCACGCCATTGCTTTGCATTTGACGGGATAT
GTCTCAAGCGGGAATGGCGGGGGGGCGACGGGCGCAGGTGCGATGGTCTC
GCAAGCGCCGCCTGCGCAATCCCAAGAAATGACTAGCACGGACCACTCAC
ATCAGCAAAATACAGATCAAGACAGAATTGTGCAACCTGTGGCCACCGGA
GAGGCTGGATGGGAGTGATGGTCGATATGCAGAGCAAAATTAGTTTCTAC
TCGGTTCTGCTTGCTTTTGTTGAGTTTTCTTCTCCCCACCCCTCATCCTC
TTGTGCACATAATTCTGCCGTCATGGCGCTCTGCTTGCCACTCACTTTTT
CTTTCTTCAAATTGTGGTGTGAATATGGTATGCAAGTGGCGTTCTATCAG
CGTTTTGGCGTTTAAATTTTTATTGCTTAGTTCCCTACAAGGCTGTGTAC
CACAGCGCAACTCATTCTGAAGCCACGGGTTTCACATTTCCTTGCACAGT
CCTTAAAGGTTGAAGCCTCTCAGTCAATCATTGTAAGAAAAAGTGTGCGT
CCTAAATGATTCAAGGTCGAGCTTTGTCCTATTCGATTTCTTTGCCATAC
TTTGTTATGTTCATTCATGCAGAAATCTTGTACAAGTCATTCTTTTATTT
ATCTAACTTCTAACCTCAAGGCACTGCCCTACATCCCATCACCAACCCTT
ATACTAATGCCTTTGTTTAAGGCTCTTGAGTCTTTTGCCGGCACTGCTCT
CATCATACTCCATCCCCGGCGTGATCAATCTCTCGCCACTCCTCCCTTCC
TCCTACTCTCACCCTCCTTGCATTCACGACGACCGCCCCACTACCGTCCC
CACCACCAATAGGGGGGTCGTAGATTTCTCTACAAAGTCCTTTACCGCCA
CGCCGCCCGCCTCCATCCCCTCGTCCAAAAATATCGTCCTATACTCTGCA
ATCCGCAACTTGCTCCTCTTTAATGCCGCGGTCACCGTCGTCACATCCTT
CGAGAAAGTCCCCACAGCCAACAGACACTCATAATCTCTCAACTCCACGC
ATATCCTACCCAAAATCGACAACCTTTCCTCCACCGTACACGCCTTCTTT
CTCCTTCCTGTTTCTTCAGTAGCCGTCGTTGCAGCTGTCGCTGCTGCTGC
TGCTCCGGAAGGGGAGGCAGTGGCAAATTGCTCGCGGATCGCAAGGAAGG
TATCCAACACAACCTCCGACGGTGCCTCAAAGCGGGCCCAGGGCCACTGC
GAGGATGTCCAAGCGTGCTGTTGCCACTTTCTGGCGTCATTCCTGCTGCC
AGTACTGTTAGTGGTACTGGCACTGCTGCTGAAGCTCGTGGTGCCCGGGC
TCATCCAGGGCTGGAGGGAGGGAAAGGGGACCCGGCGGAGGTCGCCTCCA
CCGAGGAGCAGCAACGAGTCAACTAGCTCTCGCAAGCGAAGCGTGGCCAG
GCACATAGATGCAAACAGGGTCAAGACTTCCGTCCCCGATCCCGCGTGTT
GCAATAAGTCGAAATCTGCCAAGGACGAGGAAGACGAAGAGGAAGGATTT
GATTCAGGCGCATCTGGCTCAGACATCCATCCATACCCTCTTCCTCCTCC
TCCTCCCCTCGCGGCACCAACGGAAGCAACCGTCCCAGGTAAATGTTCCA
GAAACTCATTCAGCGGACGCGAAATCGGGTTTACACTCCCTGCACGCGAG
GCTGGCGCTGACGACAGACCTTTCTCGTTTTGGCCACCACCTCCTCCTAC
ATCGCTACCCGCCCCCGACGGCGCGCCCAATACCCCGAAAGTCGCGCGGT
ACAACAAATCCACCAGTGACCTACTGCCTCCCTCCGAACCATTTACTGCC
TCGCATCCTCTCCCTCCCCCTCCAGCCTCGCTCAAAAACCGCGCTTCCTG
GTCATACAGCTTCAGAGCCTCTTCTCTCTTCTGAATGAACCGCCACAGTT
GCTTCAGCATCTGCCACTCCTTCTTCCCCCTCCTCAGCGCCTCCCACAGC
AGACGTAAAGCCAATCCATGGACCAACTTCAAATCTTGCATTTCCTCCCA
GTTCGCCAACAGCCGCGCCCGTCGATCAGTCGATGGGAAAAGCAGCCCCC
CTCCTCCTCCCCTGCCTCCGTCCCTCCCCGGGGGGTCAATCAATGGTAAG
TAAAGCAATGCCGTATGCATCTTTTTTGTTGCCAGGCATTTCTCAAATAA
AGTCACCGGCGTATCCCCAAAGCCTTGTTCGTCGAGATCAGGTAAGGGGA
AAATGTATTTGAGGCGAGAGGGTTCAATTTTCCGCGCGACTCGGACGATG
ACCTCATAAAATAAATCTAGCCCCGCCTCCCGTCGACAGAGGGCAAGAGC
GGCCTTGACTTGTTCCGTGCTGGCCGAAAAAGAGGTGAAATAAGAAGAGA
TGCCTGCAGTGAATTCAGCGATTCGAAGGTTGGTGGTGCTGGTGGAGGAT
AGTCCCAAACCCTGTTTCTTTGATCGCGGGTGAGCCTTGGCCAGTGCTTC
AATGCACGAACGAAGGAGAAAATCCAGAGCATCCGCAAGCTGGATACGAG
TCTCGGGTTGAGAATAAAGTTCATCAAACACACCAGCCACTACACCACCG
ACTGCGTTGGCTGCTGCATTGCTGCTGGTGCGGGTGTCAGTAGAAGCAGC
AGCAATAGCAGCAGCACTGGTAGCGGTGTTGTTGGAAAAAGACAACTTTG
CCTCCACGCCATTCCTCATGTCGCTGTTGCGGCATTCCTCCGTCGATGAC
GACGCAGATAGAGATACCTTGAAACCCCCAATCTTCCCTTCTCCTCCTCC
CCCGTTTCTCTCGGCTTTACTTCCTCCCTCCTTTCTCTCTAACAACATAC
TCTGCAAAAACAACAAAAAACGAAATGCTATCTGATAAATTGGCCGCCGT
TGTAGACCTACTTCAAAACGTGGAGGAATAGGCGGCCCTCCATTCGAGGC
CGCATACTTTAGCGAAGCTTGCGGTTGAATGCAGGACTGCGTCAGGAAAA
TAAGAGAGGAGGTAGGGCCATGGATGCCCATTATCACTCCTTCCACGTCG
GGATTGAAGGTAGGATCAAGGAAAGGTAGCTGGCAGGCTTCTCGGGTGAG
TAGGAGGGATTTGGGCTCGCTGAGGGTAAGAGAGGGAAGCCAGAGGGAAA
ACCCCTGTTCACCACAGTAGAGAACATAGCAGGGGTGCATGGCTTTCTCT
TCTGTGGGGAGAACGAGCTCCCACAAGCTACTGACGCCCTTGGCAATGAG
TGTTGTGACGGCTGATTTGATTTCGACTTGGTAAAGACTTCCCGTGGAGG
AGAGGACAGCCACGGCTCGAGGGCTGACGTTGGGGAGGAGGATGATCCGC
CGGGGGGTTTCGCCCCTGCCCAGGGCTTGGACGGGGCCTGGAGTAAGGGA
GGTTGTAACAGCAGTGGCAGCAGCAGCGGTAGCAGGAGCAGGAGCAGCAG
TTGTTGCTCCGCCTGAATGGAGTGGTATTTTTAAGTCACG

Coding sequence (CDS) from alignment at scaffold_17:184858..188747-

>mRNA_6821 ID=mRNA_6821|Name=jgi.p|Nanoce1779_2|596438|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_17:184858..188747- (Nannochloropsis oceanica)
GTAAATGACTGGATGCATACAATTTTGGATGCCTGTCTGCGGGACCTTGT
GGCCTTAAATCGGCCAAGCAAGTACTTGCTCTCGTGCGTGCTCTCCCAAA
AAAATGGGGCCGGCTTTCGCTCTGTCGCGTCGCAATATTGGGATGGACGG
TCGGATTTCACTCGTGCCGTAAGTTGGGAGAATGATCATATACATTGTCT
CGTCACGATCCACGCCATTGCTTTGCATTTGACGGGATATGTCTCAAGCG
GGAATGGCGGGGGGGCGACGGGCGCAGGTGCGATGGTCTCGCAAGCGCCG
CCTGCGCAATCCCAAGAAATGACTAGCACGGACCACTCACATCAGCAAAA
TACAGATCAAGACAGAATTGTGCAACCTGTGGCCACCGGAGAGGCTGGAT
GGGAGTGAATGGAGCATCGCAGCAGCCTCCTGGACGATATTGATAAGATT
GTGTGGAGCGCTGTGGGTGCCATCTTAGATTCGTCTTTCTACTCCTCGAA
AAAGGTAAATGACTGGATGCATACAATTTTGGATGCCTGTCTGCGGGACC
TTGTGGCCTTAAATCGGCCAAGCAAGTACTTGCTCTCGTGCGTGCTCTCC
CAAAAAAATGGGGCCGGCTTTCGCTCTGTCGCGTCGCAATATTGGGATGG
ACGGTCGGATTTCACTCGTGCCGTAAGTTGGGAGAATGATCATATACATT
GTCTCGTCACGATCCACGCCATTGCTTTGCATTTGACGGGATATGTCTCA
AGCGGGAATGGCGGGGGGGCGACGGGCGCAGGTGCGATGGTCTCGCAAGC
GCCGCCTGCGCAATCCCAAGAAATGACTAGCACGGACCACTCACATCAGC
AAAATACAGATCAAGACAGAATTGTGCAACCTGTGGCCACCGGAGAGGCT
GGATGGGAGTGAATGGAGCATCGCAGCAGCCTCCTGGACGATATTGATAA
GATTGTGTGGAGCGCTGTGGGTGCCATCTTAGATTCGTCTTTCTACTCCT
CGAAAAAG

Synonyms

Publications