jgi.p|Nanoce1779_2|511751, mRNA_682 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|511751
Unique Name	mRNA_682
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	900
Alignment location	scaffold_2:183285..184479 +

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Properties


Property Name	Value
TranscriptId	511837
Track	FilteredModels2
ProteinId	511751

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:183285..184479 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|511751	gene_682	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|511751	mRNA_682-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_682	CDS_682	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:183285..184479+
coding sequence from alignment at scaffold_2:183285..184479+

mRNA sequence

>mRNA_682 ID=mRNA_682|Name=jgi.p|Nanoce1779_2|511751|organism=Nannochloropsis oceanica|type=mRNA|length=900bp
ATGCAAACCCTCATGATCATCTCGATCCTCGCTGAAATCGCCGGCCGTCT
CGGCCTACTCAAAGACCTGAAATTCCCCTCCCCCCCCTTCCCCTCCTCCC
TTTCCCCCTCTTCACGGGGCCTCTCCTCCACCCGCGGTCCCCCTATTTTT
AATTTCGAGTTAATGAACGGTAAATTTCAAGTAGATAAAATAAGATTGAG
TCTCCTCACTGGTGATATGATGGGTGAAGCCTTGGCTACTGCAACGGCTG
CGCGTAAGGCTGCCCTGACAGCAGCTGTGATGGCTGCGACTAGCGGAGGA
GGAGGAGGAGGAGGGGGAGAAGGAGGAGAAGGCGTGGTGACAGAGGTGAG
GCATACGACGGTGTATGGTGACGGCGAGAACAGCAGCAGTAGCAGCAGCA
GTGGCAGCAGCAGTGGCAGCAGGAATGCAGCGTCTTGCTCGCAAGTTTCT
CCCACCCCTACCTCGATCAATGAGAGCACCAACACCTCCTATCCAAGAAA
GACAACCACGTCAACTGTCCCCGTCCCTCCTTCCATCCCTCCCTCCCCTC
GTCCTCGCGCATACGTCGTGTCCGTCAAAGGCGACATGTTCCTCTCTCAA
GGTGCATATCTCACCTCCCTCGTTTCATTTTTATTGGAAGTGGCACGTCC
TCAACCGGGAGGGGATGAATTAATATTATTGTTGGAGTCGGGAGGTGGTG
CAGCGTATGAGTACGGCTTGGCCTCGGCTCAACTCGAGAGACTTAGGAGG
GCAGGGGTGAAGCTGACGGTGTGCGTGGACAAAGTCGCTGCCAGTGGGGG
ATACATGATGGCGGTGGTGGCCGACACGTTGATTGCCGCGCCCTTTGCGA
CAGTTGGCAGCATCGGGGCCACCACCAGTGTGCCTGTCCTCAACGTCGGG

protein sequence of jgi.p|Nanoce1779_2|511751

>mRNA_682-protein ID=mRNA_682-protein|Name=jgi.p|Nanoce1779_2|511751|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MQTLMIISILAEIAGRLGLLKDLKFPSPPFPSSLSPSSRGLSSTRGPPIF
NFELMNGKFQVDKIRLSLLTGDMMGEALATATAARKAALTAAVMAATSGG
GGGGGGEGGEGVVTEVRHTTVYGDGENSSSSSSSGSSSGSRNAASCSQVS
PTPTSINESTNTSYPRKTTTSTVPVPPSIPPSPRPRAYVVSVKGDMFLSQ
GAYLTSLVSFLLEVARPQPGGDELILLLESGGGAAYEYGLASAQLERLRR
AGVKLTVCVDKVAASGGYMMAVVADTLIAAPFATVGSIGATTSVPVLNVG

mRNA from alignment at scaffold_2:183285..184479+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_682 ID=mRNA_682|Name=jgi.p|Nanoce1779_2|511751|organism=Nannochloropsis oceanica|type=mRNA|length=1195bp|location=Sequence derived from alignment at scaffold_2:183285..184479+ (Nannochloropsis oceanica)
ATGCAAACCCTCATGATCATCTCGATCCTCGCTGAAATCGCCGGCCGTCT
CGGCCTACTCAAAGACCTGAAATTCCCCTCCCCCCCCTTCCCCTCCTCCC
TTTCCCCCTCTTCACGGGGCCTCTCCTCCACCCGCGGTCCCCCTATTTTT
AATTTCGAGTTAATGAACGGTAAATTTCAAGTAGATAAAATAAGATTGAG
TCTCCTCACTGGTGATATGATGGGTGAAGCCTTGGCTACTGCAACGGCTG
CGCGTAAGGCTGCCCTGACAGCAGCTGTGATGGCTGCGACTAGCGGTGTG
AGTGGGAAAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGGGGAGAAGGAGGAGAAGGCGTGGTGACAGAGGTGAGGCATACGA
CGGTGTATGGTGACGGCGAGAACAGCAGCAGTAGCAGCAGCAGTGGCAGC
AGCAGTGGCAGCAGGAATGCAGCGTCTTGCTCGCAAGTTTCTCCCACCCC
TACCTCGATCAATGAGAGCACCAACACCTCCTATCCAAGAAAGACAACCA
CGTCAACTGTCCCCGTCCCTCCTTCCATCCCTCCCTCCCCTCGTCCTCGC
GCATACGTCGTGTCCGTCAAAGGCGACATGTTCCTCTCTCAAGGTGCATA
TCTCACCTCCCTCGTTTCATTTTTATTGGAAGTGGCACGTCCTCAACCGG
GAGGGGATGAATTAATATTATTGTTGGAGTCGGGAGGTGGTGCAGCGTAT
GAGTACGGCTTGGCCTCGGCTCAACTCGAGGTGAGAATGGGGGGGAGGGC
GGGAGGAGAGGAGGGGAAAGGCGCTCGATGGATACGTGTAATTGTGGGAG
TCGGATGAATCAGGGGAGAGAGGGGGAAGTGAAGGCTAGAATGAGCGTTT
GCGTATGGGCTTGTGTCGGCAGAGCGAGGTCTACCCACGTAATCCACTAC
CACATCGTCACCTCATTGATTTCTTCCCTCCCTCTCCTCTTCCTTCCTCC
CTTTCCTCCCCCTTTCACCAACTACACCCACAGAGACTTAGGAGGGCAGG
GGTGAAGCTGACGGTGTGCGTGGACAAAGTCGCTGCCAGTGGGGGATACA
TGATGGCGGTGGTGGCCGACACGTTGATTGCCGCGCCCTTTGCGACAGTT
GGCAGCATCGGGGCCACCACCAGTGTGCCTGTCCTCAACGTCGGG

Coding sequence (CDS) from alignment at scaffold_2:183285..184479+

>mRNA_682 ID=mRNA_682|Name=jgi.p|Nanoce1779_2|511751|organism=Nannochloropsis oceanica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_2:183285..184479+ (Nannochloropsis oceanica)
ATGCAAACCCTCATGATCATCTCGATCCTCGCTGAAATCGCCGGCCGTCT
CGGCCTACTCAAAGACCTGAAATTCCCCTCCCCCCCCTTCCCCTCCTCCC
TTTCCCCCTCTTCACGGGGCCTCTCCTCCACCCGCGGTCCCCCTATTTTT
AATTTCGAGTTAATGAACGGTAAATTTCAAGTAGATAAAATAAGATTGAG
TCTCCTCACTGGTGATATGATGGGTGAAGCCTTGGCTACTGCAACGGCTG
CGCGTAAGGCTGCCCTGACAGCAGCTGTGATGGCTGCGACTAGCGGAGGA
GGAGGAGGAGGAGGGGGAGAAGGAGGAGAAGGCGTGGTGACAGAGGTGAG
GCATACGACGGTGTATGGTGACGGCGAGAACAGCAGCAGTAGCAGCAGCA
GTGGCAGCAGCAGTGGCAGCAGGAATGCAGCGTCTTGCTCGCAAGTTTCT
CCCACCCCTACCTCGATCAATGAGAGCACCAACACCTCCTATCCAAGAAA
GACAACCACGTCAACTGTCCCCGTCCCTCCTTCCATCCCTCCCTCCCCTC
GTCCTCGCGCATACGTCGTGTCCGTCAAAGGCGACATGTTCCTCTCTCAA
GGTGCATATCTCACCTCCCTCGTTTCATTTTTATTGGAAGTGGCACGTCC
TCAACCGGGAGGGGATGAATTAATATTATTGTTGGAGTCGGGAGGTGGTG
CAGCGTATGAGTACGGCTTGGCCTCGGCTCAACTCGAGAGACTTAGGAGG
GCAGGGGTGAAGCTGACGGTGTGCGTGGACAAAGTCGCTGCCAGTGGGGG
ATACATGATGGCGGTGGTGGCCGACACGTTGATTGCCGCGCCCTTTGCGA
CAGTTGGCAGCATCGGGGCCACCACCAGTGTGCCTGTCCTCAACGTCGGG
ATGCAAACCCTCATGATCATCTCGATCCTCGCTGAAATCGCCGGCCGTCT
CGGCCTACTCAAAGACCTGAAATTCCCCTCCCCCCCCTTCCCCTCCTCCC
TTTCCCCCTCTTCACGGGGCCTCTCCTCCACCCGCGGTCCCCCTATTTTT
AATTTCGAGTTAATGAACGGTAAATTTCAAGTAGATAAAATAAGATTGAG
TCTCCTCACTGGTGATATGATGGGTGAAGCCTTGGCTACTGCAACGGCTG
CGCGTAAGGCTGCCCTGACAGCAGCTGTGATGGCTGCGACTAGCGGAGGA
GGAGGAGGAGGAGGGGGAGAAGGAGGAGAAGGCGTGGTGACAGAGGTGAG
GCATACGACGGTGTATGGTGACGGCGAGAACAGCAGCAGTAGCAGCAGCA
GTGGCAGCAGCAGTGGCAGCAGGAATGCAGCGTCTTGCTCGCAAGTTTCT
CCCACCCCTACCTCGATCAATGAGAGCACCAACACCTCCTATCCAAGAAA
GACAACCACGTCAACTGTCCCCGTCCCTCCTTCCATCCCTCCCTCCCCTC
GTCCTCGCGCATACGTCGTGTCCGTCAAAGGCGACATGTTCCTCTCTCAA
GGTGCATATCTCACCTCCCTCGTTTCATTTTTATTGGAAGTGGCACGTCC
TCAACCGGGAGGGGATGAATTAATATTATTGTTGGAGTCGGGAGGTGGTG
CAGCGTATGAGTACGGCTTGGCCTCGGCTCAACTCGAGAGACTTAGGAGG
GCAGGGGTGAAGCTGACGGTGTGCGTGGACAAAGTCGCTGCCAGTGGGGG
ATACATGATGGCGGTGGTGGCCGACACGTTGATTGCCGCGCCCTTTGCGA
CAGTTGGCAGCATCGGGGCCACCACCAGTGTGCCTGTCCTCAACGTCGGG
ATGCAAACCCTCATGATCATCTCGATCCTCGCTGAAATCGCCGGCCGTCT
CGGCCTACTCAAAGACCTGAAATTCCCCTCCCCCCCCTTCCCCTCCTCCC
TTTCCCCCTCTTCACGGGGCCTCTCCTCCACCCGCGGTCCCCCTATTTTT
AATTTCGAGTTAATGAACGGTAAATTTCAAGTAGATAAAATAAGATTGAG
TCTCCTCACTGGTGATATGATGGGTGAAGCCTTGGCTACTGCAACGGCTG
CGCGTAAGGCTGCCCTGACAGCAGCTGTGATGGCTGCGACTAGCGGAGGA
GGAGGAGGAGGAGGGGGAGAAGGAGGAGAAGGCGTGGTGACAGAGGTGAG
GCATACGACGGTGTATGGTGACGGCGAGAACAGCAGCAGTAGCAGCAGCA
GTGGCAGCAGCAGTGGCAGCAGGAATGCAGCGTCTTGCTCGCAAGTTTCT
CCCACCCCTACCTCGATCAATGAGAGCACCAACACCTCCTATCCAAGAAA
GACAACCACGTCAACTGTCCCCGTCCCTCCTTCCATCCCTCCCTCCCCTC
GTCCTCGCGCATACGTCGTGTCCGTCAAAGGCGACATGTTCCTCTCTCAA
GGTGCATATCTCACCTCCCTCGTTTCATTTTTATTGGAAGTGGCACGTCC
TCAACCGGGAGGGGATGAATTAATATTATTGTTGGAGTCGGGAGGTGGTG
CAGCGTATGAGTACGGCTTGGCCTCGGCTCAACTCGAGAGACTTAGGAGG
GCAGGGGTGAAGCTGACGGTGTGCGTGGACAAAGTCGCTGCCAGTGGGGG
ATACATGATGGCGGTGGTGGCCGACACGTTGATTGCCGCGCCCTTTGCGA
CAGTTGGCAGCATCGGGGCCACCACCAGTGTGCCTGTCCTCAACGTCGGG

Synonyms

Publications