jgi.p|Nanoce1779_2|113785, mRNA_6819 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|113785
Unique NamemRNA_6819
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1291
Alignment locationscaffold_17:180695..182382 -

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Properties
Property NameValue
TranscriptId113871
TrackFilteredModels2
ProteinId113785
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:180695..182382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|113785gene_6819Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|113785mRNA_6819-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6819CDS_6819Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6819 ID=mRNA_6819|Name=jgi.p|Nanoce1779_2|113785|organism=Nannochloropsis oceanica|type=mRNA|length=1291bp
GCCGGGCTTCCGTGAGCGGCAGCGATGGCAAAATGGCCGGAATGAGCAAC
CATAGGACAAAACTGCCGTGGTGTCCTGCGCGCTCCAGCAAGTCTAGGTC
TTGTTATGGGGAAATCTTTTCAGTGTATTCACATCGCAGACATCCCTATT
CTCTTCACTCGAATCGACAGGTGGCGACAAGCAAACGGGGCAGCGGGCGG
AGGCATCATAACTATCGTTAGCCATGCGATTCAGCAGTGTGCTCGGTTTG
CCCTCCACGCTGCGCCTTTTGCTCCTCCTCCTCGCCATCATGCTTGTTCA
GGACGGACTCAGCTTTGTGCTGCGACCATTCTCGATGCCCGCCGTCCAAC
GAGCTTCCCACACTTTTCAAAGTGCCGTGCAAGTTTCCCGTGTCACCAAC
CCAGCGGATGCCATAGAGATCAGCGAATTTTTTGTGACGTCCTTCTGGGA
CGCTCCTATCACAAAGGCCAAACAAAAAGATCAATTGAAGAGCGAAGTTT
ACCGAGACCTGACCACCCGTTACATCGGCAAGGGAGGAGCAGGAGGAGGC
GCATCAGCAGCATCAGCACGAGTACCAGCAGCGACAGGGATGGGGAAATC
GGCGCTGCTGGTCGCGAAGGAAGGAGGGAAGGTGATTGGATGTGTGGGGT
TAGAAACGCGAGTGATCCGCGAGGGGCAAGTCACTAAATTTGAGGTGGTT
GGAAAAGGAGACGCCCCAGGGACAAGCATTGGACCTGTAGTGGCTAATCT
AGCAGTGGATCGAAAGTTGAGAAGGAAGGGTATAGGAAAAAAGATATTGG
CGGAGTGCGAGAAGATCGTGAAGGGGTGGGGGTTCCAGGAGCTATGGTTG
GTGGTGGACGAGAAGAACAAAGCTGCCCGGGGTCTCTACGAAAAAAATGG
CTACGAGCTCGTAGCACGCGACCCGCGCGGTATGAAAGTCATTCCCACCG
AATGGCAATTGAAGGAAGTTCCTGTAACAAATTTGTGTATGTGCAAGGAC
TTGAAGAAGGGAGGGAAGGGGGGGGAAGGAGTCTTGGGGGGGATCCTGGG
AGGATTATTTGGAAGGAGATAAAGGAGGTAGCGAGGGTAAATGCGTCAGA
CAGCTTTGCTGGTAGTGGGATAGACATTAGCAACAAAGAGCAAGTAGAGG
GAGCGATTTACCATACAAAAAAGAAAAACAAAGTGAATGTGATACGTATA
AGCGTCCTTTACATATATCTTTAAGAGAGCGAAGGCAAAGTTTGCAAGAA
AAGAGCAAAGAAAAGGGGTGACAGGGACCGGAGCCTTTACT
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protein sequence of jgi.p|Nanoce1779_2|113785

>mRNA_6819-protein ID=mRNA_6819-protein|Name=jgi.p|Nanoce1779_2|113785|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MRFSSVLGLPSTLRLLLLLLAIMLVQDGLSFVLRPFSMPAVQRASHTFQS
AVQVSRVTNPADAIEISEFFVTSFWDAPITKAKQKDQLKSEVYRDLTTRY
IGKGGAGGGASAASARVPAATGMGKSALLVAKEGGKVIGCVGLETRVIRE
GQVTKFEVVGKGDAPGTSIGPVVANLAVDRKLRRKGIGKKILAECEKIVK
GWGFQELWLVVDEKNKAARGLYEKNGYELVARDPRGMKVIPTEWQLKEVP
VTNLCMCKDLKKGGKGGEGVLGGILGGLFGRR*
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mRNA from alignment at scaffold_17:180695..182382-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6819 ID=mRNA_6819|Name=jgi.p|Nanoce1779_2|113785|organism=Nannochloropsis oceanica|type=mRNA|length=1688bp|location=Sequence derived from alignment at scaffold_17:180695..182382- (Nannochloropsis oceanica)
GCCGGGCTTCCGTGAGCGGCAGCGATGGCAAAATGGCCGGAATGAGCAAC
CATAGGACAAAACTGCCGTGGTGTCCTGCGCGCTCCAGCAAGTCTAGGTC
TTGTTATGGGGAAATCTTTTCAGTGTATTCACATCGCAGACATCCCTATT
CTCTTCACTCGAATCGACAGGTGGCGACAAGCAAACGGGGCAGCGGGCGG
AGGCATCATAACTATCGTTAGCCATGCGATTCAGCAGTGTGCTCGGTTTG
CCCTCCACGCTGCGCCTTTTGCTCCTCCTCCTCGCCATCATGCTTGTTCA
GGACGGACTCAGCTTTGTGCTGCGACCATTCTCGATGCCCGCCGTCCAAC
GAGGTAAGAAGTAAGGGTGTATGAAATGCATGATGCGGTGGGTTCAACCC
CGTCGTATGCGTCGTGTATGGGGCCCCGTCCTGTGGGCAGGGCGATATGT
TGGGGACTTTTAACATTGGTCTTTGCACGACTTTGTCATTCTCTTACATA
TTAAGCCTCTTGTATCGTGTGACTGCACTAATGTGCTGCCTCCGAGATCG
CTTGACCTCTCTTCCCTTCCACCTCCTTTTCACCGACAACAGCTTCCCAC
ACTTTTCAAAGTGCCGTGCAAGTTTCCCGTGTCACCAACCCAGCGGATGC
CATAGAGATCAGCGAATTTTTTGTGACGTCCTTCTGGGACGCTCCTATCA
CAAAGGCCAAACAAAAAGATCAATTGAAGAGCGAAGTTTACCGAGACCTG
ACCACCCGTTACATCGGCAAGGGAGGAGCAGGAGGAGGCGCATCAGCAGC
ATCAGCACGAGTACCAGCAGCGACAGGGATGGGGAAATCGGCGCTGCTGG
TCGCGAAGGAAGGAGGGAAGGTGATTGGATGTGTGGGGTTAGAAACGCGA
GTGATCCGCGAGGGGCAAGTCACTAAATTTGAGGTGGTTGGAAAAGGAGA
CGCCCCAGGGACAAGCATTGGACCTGTAGTGGCTAATCTAGCAGTGGATC
GAAAGTTGAGAAGGAAGGGTATAGGAAAAAAGATATTGGCGGAGTGCGAG
AAGATCGTGAAGGGGTGGGGGTTCCAGGTACGGAGGGATGGGAGGAGGGC
TGGGATGGGAGAAAGTGAGGGTGGCTATGGGTGGTGAAGGACGCGGTCTA
GGATGACGGTCATCCACATATCTATATCCTTACTTATTTCCATCTGTTTC
TTTTCTCTTTCTCCGCACTCACTCTCCCTCCTTAGGAGCTATGGTTGGTG
GTGGACGAGAAGAACAAAGCTGCCCGGGGTCTCTACGAAAAAAATGGCTA
CGAGCTCGTAGCACGCGACCCGCGCGGTATGAAAGTCATTCCCACCGAAT
GGCAATTGAAGGAAGTTCCTGTAACAAATTTGTGTATGTGCAAGGACTTG
AAGAAGGGAGGGAAGGGGGGGGAAGGAGTCTTGGGGGGGATCCTGGGAGG
ATTATTTGGAAGGAGATAAAGGAGGTAGCGAGGGTAAATGCGTCAGACAG
CTTTGCTGGTAGTGGGATAGACATTAGCAACAAAGAGCAAGTAGAGGGAG
CGATTTACCATACAAAAAAGAAAAACAAAGTGAATGTGATACGTATAAGC
GTCCTTTACATATATCTTTAAGAGAGCGAAGGCAAAGTTTGCAAGAAAAG
AGCAAAGAAAAGGGGTGACAGGGACCGGAGCCTTTACT
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Coding sequence (CDS) from alignment at scaffold_17:180695..182382-

>mRNA_6819 ID=mRNA_6819|Name=jgi.p|Nanoce1779_2|113785|organism=Nannochloropsis oceanica|type=CDS|length=2547bp|location=Sequence derived from alignment at scaffold_17:180695..182382- (Nannochloropsis oceanica)
GAGCTATGGTTGGTGGTGGACGAGAAGAACAAAGCTGCCCGGGGTCTCTA
CGAAAAAAATGGCTACGAGCTCGTAGCACGCGACCCGCGCGGTATGAAAG
TCATTCCCACCGAATGGCAATTGAAGGAAGTTCCTGTAACAAATTTGTGT
ATGTGCAAGGACTTGAAGAAGGGAGGGAAGGGGGGGGAAGGAGTCTTGGG
GGGGATCCTGGGAGGATTATTTGGAAGGAGATAACTTCCCACACTTTTCA
AAGTGCCGTGCAAGTTTCCCGTGTCACCAACCCAGCGGATGCCATAGAGA
TCAGCGAATTTTTTGTGACGTCCTTCTGGGACGCTCCTATCACAAAGGCC
AAACAAAAAGATCAATTGAAGAGCGAAGTTTACCGAGACCTGACCACCCG
TTACATCGGCAAGGGAGGAGCAGGAGGAGGCGCATCAGCAGCATCAGCAC
GAGTACCAGCAGCGACAGGGATGGGGAAATCGGCGCTGCTGGTCGCGAAG
GAAGGAGGGAAGGTGATTGGATGTGTGGGGTTAGAAACGCGAGTGATCCG
CGAGGGGCAAGTCACTAAATTTGAGGTGGTTGGAAAAGGAGACGCCCCAG
GGACAAGCATTGGACCTGTAGTGGCTAATCTAGCAGTGGATCGAAAGTTG
AGAAGGAAGGGTATAGGAAAAAAGATATTGGCGGAGTGCGAGAAGATCGT
GAAGGGGTGGGGGTTCCAGATGCGATTCAGCAGTGTGCTCGGTTTGCCCT
CCACGCTGCGCCTTTTGCTCCTCCTCCTCGCCATCATGCTTGTTCAGGAC
GGACTCAGCTTTGTGCTGCGACCATTCTCGATGCCCGCCGTCCAACGAGG
AGCTATGGTTGGTGGTGGACGAGAAGAACAAAGCTGCCCGGGGTCTCTAC
GAAAAAAATGGCTACGAGCTCGTAGCACGCGACCCGCGCGGTATGAAAGT
CATTCCCACCGAATGGCAATTGAAGGAAGTTCCTGTAACAAATTTGTGTA
TGTGCAAGGACTTGAAGAAGGGAGGGAAGGGGGGGGAAGGAGTCTTGGGG
GGGATCCTGGGAGGATTATTTGGAAGGAGATAACTTCCCACACTTTTCAA
AGTGCCGTGCAAGTTTCCCGTGTCACCAACCCAGCGGATGCCATAGAGAT
CAGCGAATTTTTTGTGACGTCCTTCTGGGACGCTCCTATCACAAAGGCCA
AACAAAAAGATCAATTGAAGAGCGAAGTTTACCGAGACCTGACCACCCGT
TACATCGGCAAGGGAGGAGCAGGAGGAGGCGCATCAGCAGCATCAGCACG
AGTACCAGCAGCGACAGGGATGGGGAAATCGGCGCTGCTGGTCGCGAAGG
AAGGAGGGAAGGTGATTGGATGTGTGGGGTTAGAAACGCGAGTGATCCGC
GAGGGGCAAGTCACTAAATTTGAGGTGGTTGGAAAAGGAGACGCCCCAGG
GACAAGCATTGGACCTGTAGTGGCTAATCTAGCAGTGGATCGAAAGTTGA
GAAGGAAGGGTATAGGAAAAAAGATATTGGCGGAGTGCGAGAAGATCGTG
AAGGGGTGGGGGTTCCAGATGCGATTCAGCAGTGTGCTCGGTTTGCCCTC
CACGCTGCGCCTTTTGCTCCTCCTCCTCGCCATCATGCTTGTTCAGGACG
GACTCAGCTTTGTGCTGCGACCATTCTCGATGCCCGCCGTCCAACGAGGA
GCTATGGTTGGTGGTGGACGAGAAGAACAAAGCTGCCCGGGGTCTCTACG
AAAAAAATGGCTACGAGCTCGTAGCACGCGACCCGCGCGGTATGAAAGTC
ATTCCCACCGAATGGCAATTGAAGGAAGTTCCTGTAACAAATTTGTGTAT
GTGCAAGGACTTGAAGAAGGGAGGGAAGGGGGGGGAAGGAGTCTTGGGGG
GGATCCTGGGAGGATTATTTGGAAGGAGATAACTTCCCACACTTTTCAAA
GTGCCGTGCAAGTTTCCCGTGTCACCAACCCAGCGGATGCCATAGAGATC
AGCGAATTTTTTGTGACGTCCTTCTGGGACGCTCCTATCACAAAGGCCAA
ACAAAAAGATCAATTGAAGAGCGAAGTTTACCGAGACCTGACCACCCGTT
ACATCGGCAAGGGAGGAGCAGGAGGAGGCGCATCAGCAGCATCAGCACGA
GTACCAGCAGCGACAGGGATGGGGAAATCGGCGCTGCTGGTCGCGAAGGA
AGGAGGGAAGGTGATTGGATGTGTGGGGTTAGAAACGCGAGTGATCCGCG
AGGGGCAAGTCACTAAATTTGAGGTGGTTGGAAAAGGAGACGCCCCAGGG
ACAAGCATTGGACCTGTAGTGGCTAATCTAGCAGTGGATCGAAAGTTGAG
AAGGAAGGGTATAGGAAAAAAGATATTGGCGGAGTGCGAGAAGATCGTGA
AGGGGTGGGGGTTCCAGATGCGATTCAGCAGTGTGCTCGGTTTGCCCTCC
ACGCTGCGCCTTTTGCTCCTCCTCCTCGCCATCATGCTTGTTCAGGACGG
ACTCAGCTTTGTGCTGCGACCATTCTCGATGCCCGCCGTCCAACGAG
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Synonyms
Publications