jgi.p|Nanoce1779_2|596426, mRNA_6817 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596426
Unique Name	mRNA_6817
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1550
Alignment location	scaffold_17:175690..177593 -

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Properties


Property Name	Value
TranscriptId	596512
Track	FilteredModels2
ProteinId	596426

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:175690..177593 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596426	gene_6817	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596426	mRNA_6817-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6817	CDS_6817	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:175690..177593-
coding sequence from alignment at scaffold_17:175690..177593-

mRNA sequence

>mRNA_6817 ID=mRNA_6817|Name=jgi.p|Nanoce1779_2|596426|organism=Nannochloropsis oceanica|type=mRNA|length=1550bp
CAGCTCTCTGCCACAGCCAGTGACGTCTGTGCTACACGCCATGGTGGAAC
TACTCGAGCTGCCGGCCCTCAAGGTCCTACTGCACGCTGCCAAGCATTCT
CATGCCGATGTCTGTGGTCTGCTTTTAGGCCCTGTAGAGAATACATCCAT
CATTGACGACGCCGTTCCCCTCTTCCATCACACCACGGTGGGTCCCCTGC
TGGAGACGGCATTTTTGCTGGTGGAGCAGTACGCCCTCACCAGGGGTAAG
CGTTTGGCAGGCTACTACTACGCGGTCGCCCAGGCCGACGACCCCTCCCA
CCCCCCTCCCTCAGTTCTGGCCGCGGCCTTTCAGCTCCAAGGCAACTATC
CAAGCGCAGTGGTCCTCCGCCTCCGCAACGACAAGCTCGCCAGCCGGACA
GTCGTGCCTTTTGAGATAGTGTCCATCAACGAAGGAGCAGCAGGGGCAGC
ATCAGGAAATGCAGGAGCAGCAGCCGCGGGGTCGTTAAAAGTGGGAGCGG
GGGGTATGCAGGCCTTTGATAGGGTCACGCAGAAGGGCATTTTTGCTGCA
TGTCGGTCATTGGTGGACATGGACGAGCATTTGGATGATGCGAAACGAGA
CTTTCGGAATCTGCATGTTGCGCAACTGCCCTTCAAAACCCCTGATTATT
CTTCGCCACTGCTCCTCCTGCTGCCGTCGTTGCCGCCACTGTAGCTACTT
GCGCTTTACTTGCTGCTTCTCTTGCACTAGTGGCCGGCTTGGAAGAGGCA
GACTTTGCTCCGGGCTTCTCGTTCGACGCAACTGCAGGTGCCTTCTTGCC
TTCTGCTCCTCCAGCCTTAGGCAACGTACCCCTCTCACTTTTCCCCTTTC
CTTTCTTCTCCTTCTTGTCCGTCGCTTTCGCTGACGGATTATTCCGCTGC
TCTCTCACTTGCAGAGTGTACCGCCTCACCGCCTTGCCAATCTTCAAGGC
AGCCACTTCCAGATTCTTTACCCGTAGTGCCTCCTGCGCCTTCTCCTCCT
CCCGCTTTGCCAACGCCGCCATTGTCCGCGCCACTTCCTCGGCCAGTTCA
ACCTTTCGACGAGTCCTCAAAGATTCCAGTTCTACTGAATACGATTCACG
CGCAACAGCAACCTCCTCGTTCTCGGCGTCGAGCTTCCCAAAGTCCTGGT
CCGCCTTGGTGGTCCACTCAGCAATTTGGCCCTGAAGCTCCAGTTTTTCC
TCCATCAGATATGTCATCAAGTCCCGAAAGCTCTGCCTCTCCAGTGCCTG
TTGAGCTAGAAGATGGGCCTGCTTGCGTTCGAGATCTTTTTCTACCTGGC
GATAAAGGTGTTGCACCCCGCTCGCCTTCGCTTGGGCTTTCCGTCGGGTG
TATTTCAGGGTGACCTCGTGTTTGTATTGTAATCTATCCATCTCCACTTT
CAAAGCAGCAATAGCGGCCTGCTGCATCGCCACATGATCTTGGTGGGTGA
TGATGGCATCTTGCAAGGCTAGCTCGAGCTGACTCGCCCTCCATGTCGTG
CTTTGCTCCTGGTATACCACTTGGGCAAGAAGGTCCTGCGCCTGTCGTGC

protein sequence of jgi.p|Nanoce1779_2|596426

>mRNA_6817-protein ID=mRNA_6817-protein|Name=jgi.p|Nanoce1779_2|596426|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MVELLELPALKVLLHAAKHSHADVCGLLLGPVENTSIIDDAVPLFHHTTV
GPLLETAFLLVEQYALTRGKRLAGYYYAVAQADDPSHPPPSVLAAAFQLQ
GNYPSAVVLRLRNDKLASRTVVPFEIVSINEGAAGAASGNAGAAAAGSLK
VGAGGMQAFDRVTQKGIFAACRSLVDMDEHLDDAKRDFRNLHVAQLPFKT
PDYSSPLLLLLPSLPPL*

mRNA from alignment at scaffold_17:175690..177593-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6817 ID=mRNA_6817|Name=jgi.p|Nanoce1779_2|596426|organism=Nannochloropsis oceanica|type=mRNA|length=1904bp|location=Sequence derived from alignment at scaffold_17:175690..177593- (Nannochloropsis oceanica)
CAGCTCTCTGCCACAGCCAGTGACGTCTGTGCTACACGCCATGGTGGAAC
TACTCGAGCTGCCGGCCCTCAAGGTGCGTTGAGCTCACCCCATAGTCCGA
TGATCATTTCTTTTATGTAGCGTCGTCGTCATCATCATTATCATGCCTCC
TCCCTACCCAACCAGGTCCTACTGCACGCTGCCAAGCATTCTCATGCCGA
TGTCTGTGGTCTGCTTTTAGGCCCTGTAGAGGTAAGCCTTGAAATAGAGA
ACCCCCCCCAATCTGCCTCCCTCCCTTCACGTCCCTCCCAATCTCCTCAC
TCCCTTCCTATCTCACCATAACCACAACCGTACCATTAGAATACATCCAT
CATTGACGACGCCGTTCCCCTCTTCCATCACACCACGGTGGGTCCCCTGC
TGGAGACGGCATTTTTGCTGGTGGAGCAGTACGCCCTCACCAGGGGTAAG
CGTTTGGCAGGCTACTACTACGCGGTCGCCCAGGCCGACGACCCCTCCCA
CCCCCCTCCCTCAGTTCTGGCCGCGGCCTTTCAGCTCCAAGGCAACTATC
CAAGCGCAGTGGTCCTCCGCCTCCGCAACGACAAGCTCGCCAGCCGGACA
GTCGTGCCTTTTGAGATAGTGTCCATCAACGAAGGAGCAGCAGGGGCAGC
ATCAGGAAATGCAGGAGCAGCAGCCGCGGGGTCGTTAAAAGTGGGAGCGG
GGGGTATGCAGGCCTTTGATAGGGTCACGCAGAAGGGCATTTTTGCTGCA
TGTCGGTCATTGGTGGACATGGACGAGCATTTGGATGATGCGAAACGAGA
CTTTCGGAATCTGCATGTTGCGCAACTGCTGTTATAGATTAGATAGATAT
AAAGAAGATGGATAGCTCTTGCTGAAGCAAGTAATCTTTTTCCCTGGGTA
GCCAGGAGTGGATTCTTTTTATTTTCTCTGTTCAGTACGTATTGTCAGCC
GTTGCATGCAATATCCCTCCTGCGCTTCTTACCCCTTCAAAACCCCTGAT
TATTCTTCGCCACTGCTCCTCCTGCTGCCGTCGTTGCCGCCACTGTAGCT
ACTTGCGCTTTACTTGCTGCTTCTCTTGCACTAGTGGCCGGCTTGGAAGA
GGCAGACTTTGCTCCGGGCTTCTCGTTCGACGCAACTGCAGGTGCCTTCT
TGCCTTCTGCTCCTCCAGCCTTAGGCAACGTACCCCTCTCACTTTTCCCC
TTTCCTTTCTTCTCCTTCTTGTCCGTCGCTTTCGCTGACGGATTATTCCG
CTGCTCTCTCACTTGCAGAGTGTACCGCCTCACCGCCTTGCCAATCTTCA
AGGCAGCCACTTCCAGATTCTTTACCCGTAGTGCCTCCTGCGCCTTCTCC
TCCTCCCGCTTTGCCAACGCCGCCATTGTCCGCGCCACTTCCTCGGCCAG
TTCAACCTTTCGACGAGTCCTCAAAGATTCCAGTTCTACTGAATACGATT
CACGCGCAACAGCAACCTCCTCGTTCTCGGCGTCGAGCTTCCCAAAGTCC
TGGTCCGCCTTGGTGGTCCACTCAGCAATTTGGCCCTGAAGCTCCAGTTT
TTCCTCCATCAGATATGTCATCAAGTCCCGAAAGCTCTGCCTCTCCAGTG
CCTGTTGAGCTAGAAGATGGGCCTGCTTGCGTTCGAGATCTTTTTCTACC
TGGCGATAAAGGTGTTGCACCCCGCTCGCCTTCGCTTGGGCTTTCCGTCG
GGTGTATTTCAGGGTGACCTCGTGTTTGTATTGTAATCTATCCATCTCCA
CTTTCAAAGCAGCAATAGCGGCCTGCTGCATCGCCACATGATCTTGGTGG
GTGATGATGGCATCTTGCAAGGCTAGCTCGAGCTGACTCGCCCTCCATGT
CGTGCTTTGCTCCTGGTATACCACTTGGGCAAGAAGGTCCTGCGCCTGTC
GTGC

Coding sequence (CDS) from alignment at scaffold_17:175690..177593-

>mRNA_6817 ID=mRNA_6817|Name=jgi.p|Nanoce1779_2|596426|organism=Nannochloropsis oceanica|type=CDS|length=2616bp|location=Sequence derived from alignment at scaffold_17:175690..177593- (Nannochloropsis oceanica)
CCCTTCAAAACCCCTGATTATTCTTCGCCACTGCTCCTCCTGCTGCCGTC
GTTGCCGCCACTGTAGAATACATCCATCATTGACGACGCCGTTCCCCTCT
TCCATCACACCACGGTGGGTCCCCTGCTGGAGACGGCATTTTTGCTGGTG
GAGCAGTACGCCCTCACCAGGGGTAAGCGTTTGGCAGGCTACTACTACGC
GGTCGCCCAGGCCGACGACCCCTCCCACCCCCCTCCCTCAGTTCTGGCCG
CGGCCTTTCAGCTCCAAGGCAACTATCCAAGCGCAGTGGTCCTCCGCCTC
CGCAACGACAAGCTCGCCAGCCGGACAGTCGTGCCTTTTGAGATAGTGTC
CATCAACGAAGGAGCAGCAGGGGCAGCATCAGGAAATGCAGGAGCAGCAG
CCGCGGGGTCGTTAAAAGTGGGAGCGGGGGGTATGCAGGCCTTTGATAGG
GTCACGCAGAAGGGCATTTTTGCTGCATGTCGGTCATTGGTGGACATGGA
CGAGCATTTGGATGATGCGAAACGAGACTTTCGGAATCTGCATGTTGCGC
AACTGGTCCTACTGCACGCTGCCAAGCATTCTCATGCCGATGTCTGTGGT
CTGCTTTTAGGCCCTGTAGAGATGGTGGAACTACTCGAGCTGCCGGCCCT
CAAGCCCTTCAAAACCCCTGATTATTCTTCGCCACTGCTCCTCCTGCTGC
CGTCGTTGCCGCCACTGTAGAATACATCCATCATTGACGACGCCGTTCCC
CTCTTCCATCACACCACGGTGGGTCCCCTGCTGGAGACGGCATTTTTGCT
GGTGGAGCAGTACGCCCTCACCAGGGGTAAGCGTTTGGCAGGCTACTACT
ACGCGGTCGCCCAGGCCGACGACCCCTCCCACCCCCCTCCCTCAGTTCTG
GCCGCGGCCTTTCAGCTCCAAGGCAACTATCCAAGCGCAGTGGTCCTCCG
CCTCCGCAACGACAAGCTCGCCAGCCGGACAGTCGTGCCTTTTGAGATAG
TGTCCATCAACGAAGGAGCAGCAGGGGCAGCATCAGGAAATGCAGGAGCA
GCAGCCGCGGGGTCGTTAAAAGTGGGAGCGGGGGGTATGCAGGCCTTTGA
TAGGGTCACGCAGAAGGGCATTTTTGCTGCATGTCGGTCATTGGTGGACA
TGGACGAGCATTTGGATGATGCGAAACGAGACTTTCGGAATCTGCATGTT
GCGCAACTGGTCCTACTGCACGCTGCCAAGCATTCTCATGCCGATGTCTG
TGGTCTGCTTTTAGGCCCTGTAGAGATGGTGGAACTACTCGAGCTGCCGG
CCCTCAAGCCCTTCAAAACCCCTGATTATTCTTCGCCACTGCTCCTCCTG
CTGCCGTCGTTGCCGCCACTGTAGAATACATCCATCATTGACGACGCCGT
TCCCCTCTTCCATCACACCACGGTGGGTCCCCTGCTGGAGACGGCATTTT
TGCTGGTGGAGCAGTACGCCCTCACCAGGGGTAAGCGTTTGGCAGGCTAC
TACTACGCGGTCGCCCAGGCCGACGACCCCTCCCACCCCCCTCCCTCAGT
TCTGGCCGCGGCCTTTCAGCTCCAAGGCAACTATCCAAGCGCAGTGGTCC
TCCGCCTCCGCAACGACAAGCTCGCCAGCCGGACAGTCGTGCCTTTTGAG
ATAGTGTCCATCAACGAAGGAGCAGCAGGGGCAGCATCAGGAAATGCAGG
AGCAGCAGCCGCGGGGTCGTTAAAAGTGGGAGCGGGGGGTATGCAGGCCT
TTGATAGGGTCACGCAGAAGGGCATTTTTGCTGCATGTCGGTCATTGGTG
GACATGGACGAGCATTTGGATGATGCGAAACGAGACTTTCGGAATCTGCA
TGTTGCGCAACTGGTCCTACTGCACGCTGCCAAGCATTCTCATGCCGATG
TCTGTGGTCTGCTTTTAGGCCCTGTAGAGATGGTGGAACTACTCGAGCTG
CCGGCCCTCAAGCCCTTCAAAACCCCTGATTATTCTTCGCCACTGCTCCT
CCTGCTGCCGTCGTTGCCGCCACTGTAGAATACATCCATCATTGACGACG
CCGTTCCCCTCTTCCATCACACCACGGTGGGTCCCCTGCTGGAGACGGCA
TTTTTGCTGGTGGAGCAGTACGCCCTCACCAGGGGTAAGCGTTTGGCAGG
CTACTACTACGCGGTCGCCCAGGCCGACGACCCCTCCCACCCCCCTCCCT
CAGTTCTGGCCGCGGCCTTTCAGCTCCAAGGCAACTATCCAAGCGCAGTG
GTCCTCCGCCTCCGCAACGACAAGCTCGCCAGCCGGACAGTCGTGCCTTT
TGAGATAGTGTCCATCAACGAAGGAGCAGCAGGGGCAGCATCAGGAAATG
CAGGAGCAGCAGCCGCGGGGTCGTTAAAAGTGGGAGCGGGGGGTATGCAG
GCCTTTGATAGGGTCACGCAGAAGGGCATTTTTGCTGCATGTCGGTCATT
GGTGGACATGGACGAGCATTTGGATGATGCGAAACGAGACTTTCGGAATC
TGCATGTTGCGCAACTGGTCCTACTGCACGCTGCCAAGCATTCTCATGCC
GATGTCTGTGGTCTGCTTTTAGGCCCTGTAGAGATGGTGGAACTACTCGA
GCTGCCGGCCCTCAAG

Synonyms

Publications