jgi.p|Nanoce1779_2|567395, mRNA_6814 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|567395
Unique NamemRNA_6814
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length576
Alignment locationscaffold_17:168065..168965 +

Link to JBrowse

Properties
Property NameValue
TranscriptId567481
TrackFilteredModels2
ProteinId567395
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:168065..168965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567395gene_6814Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567395mRNA_6814-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6814CDS_6814Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6814 ID=mRNA_6814|Name=jgi.p|Nanoce1779_2|567395|organism=Nannochloropsis oceanica|type=mRNA|length=576bp
ATGGCCACCGCCGGTGCCCGTCTTACGGCCAGCATCGGCGCCGCCGGGGA
TAAGGAGAATGTGGCACCGGCCATTCCCACGACCATAACTGCAGCGCGGC
AGAAGGGCTTGGCTACCCTCCACGGTATCAGTACAACAAATGTAGTGGTG
GTAGACGATGAGGCTGATCAGGCTGATCCAACCTTCAAGAAGCCTATGAT
ACGCGAAGCGGCGACGGCTTTGCCACGGCTTTTGCTCTTCACGGAAAAGG
CGGAGGAGGTCTTTATGCTGGGAGAGGGCCTGCCCGAGAGGGAGGCTCGG
CGGAAGCTGGCCCAAGCAGTGATGGAAGACAGGGGCAACCCCTCAACGTG
GTGGCAGCTCTTACAGCACGTCCATCTTGTCTTTGGGGAGTCTGATTCGT
GCGTGGCCACGGATGCCGCGCACATCCGCAAGCTCTACCAGAAGGCCACT
CGCATCATCCCCGACTGCCCGAACCGAGACAAGGAGGACCCCGCCCTGGT
CAACATTTGGCTGGGTTTTGCTGCCGCCGAGGGACGGGTAACACTTTCTC
CAAGGCTGCCTCATACCAAGGCTTGA
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protein sequence of jgi.p|Nanoce1779_2|567395

>mRNA_6814-protein ID=mRNA_6814-protein|Name=jgi.p|Nanoce1779_2|567395|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MATAGARLTASIGAAGDKENVAPAIPTTITAARQKGLATLHGISTTNVVV
VDDEADQADPTFKKPMIREAATALPRLLLFTEKAEEVFMLGEGLPEREAR
RKLAQAVMEDRGNPSTWWQLLQHVHLVFGESDSCVATDAAHIRKLYQKAT
RIIPDCPNRDKEDPALVNIWLGFAAAEGRVTLSPRLPHTKA*
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mRNA from alignment at scaffold_17:168065..168965+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6814 ID=mRNA_6814|Name=jgi.p|Nanoce1779_2|567395|organism=Nannochloropsis oceanica|type=mRNA|length=901bp|location=Sequence derived from alignment at scaffold_17:168065..168965+ (Nannochloropsis oceanica)
ATGGCCACCGCCGGTGCCCGTCTTACGGCCAGCATCGGCGCCGCCGGGGA
TAAGGAGAATGTGGCACCGGCCATTCCCACGACCATAACTGCAGCGCGGC
AGAAGGGCTTGGCTACCCTCCACGGTATCAGTACAACAAATGTAGTGGTG
GTAGACGATGAGGCTGATCAGGCTGATCCAACCTTCAAGAAGCCTATGAT
ACGCGAAGCGGCGACGGCTTTGCCACGGCTTTTGCTCTTCACGGAAAAGG
CGGAGGAGGTCTTTATGCTGGGAGAGGGCCTGCCCGAGAGGGAGGCTCGG
CGGAAGCTGGCCCAAGCAGTGATGGAAGACAGGGGCAACCCCTCAACGTG
GTGGCAGCTCTTACAGCACGTCCATCTTGTCTTTGGGGAGTCTGATTCGT
GCGTGGCCACGGATGCCGCGCACATCCGCAAGCTCTACCAGAAGGCCACT
CGCATCATCCCCGACTGCCCGAACCGAGACAAGGAGGACCCCGCCCTGGT
CAACATTTGGCTGGGTTTTGCTGCCGCCGAGGGACGGGTAAGTGAGTCCG
ATGCCCGGGAAGCTTACACCCACATGAATCGATGTGGGATTGGGGCACGA
TCGGCGGATTTTTATATGCAATATGCAGCATTTGAAGAACGGCATGGACG
GAGCACGGAAGCGATCAAACTCCTCCAGACAGGTATTACCCGCGGCACCA
CCCCCCGGGATGTGCTTTTAGTCACATTGGATAGCATCAGTGCGCAAGGA
GGACCTACTGCCGTTACTGCTGCTGATGGTATATCTGCGGTTGCTACTGC
TGCTTCTGCCGCAAGGCCTGCAACGGCCCCATCCGTTGTTCCCTCCCCCC
CTTCCATCCTTCCCAGCACTTTCTCCAAGGCTGCCTCATACCAAGGCTTG
A
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Coding sequence (CDS) from alignment at scaffold_17:168065..168965+

>mRNA_6814 ID=mRNA_6814|Name=jgi.p|Nanoce1779_2|567395|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at scaffold_17:168065..168965+ (Nannochloropsis oceanica)
ATGGCCACCGCCGGTGCCCGTCTTACGGCCAGCATCGGCGCCGCCGGGGA
TAAGGAGAATGTGGCACCGGCCATTCCCACGACCATAACTGCAGCGCGGC
AGAAGGGCTTGGCTACCCTCCACGGTATCAGTACAACAAATGTAGTGGTG
GTAGACGATGAGGCTGATCAGGCTGATCCAACCTTCAAGAAGCCTATGAT
ACGCGAAGCGGCGACGGCTTTGCCACGGCTTTTGCTCTTCACGGAAAAGG
CGGAGGAGGTCTTTATGCTGGGAGAGGGCCTGCCCGAGAGGGAGGCTCGG
CGGAAGCTGGCCCAAGCAGTGATGGAAGACAGGGGCAACCCCTCAACGTG
GTGGCAGCTCTTACAGCACGTCCATCTTGTCTTTGGGGAGTCTGATTCGT
GCGTGGCCACGGATGCCGCGCACATCCGCAAGCTCTACCAGAAGGCCACT
CGCATCATCCCCGACTGCCCGAACCGAGACAAGGAGGACCCCGCCCTGGT
CAACATTTGGCTGGGTTTTGCTGCCGCCGAGGGACGGGTAACACTTTCTC
CAAGGCTGCCTCATACCAAGGCTTGAATGGCCACCGCCGGTGCCCGTCTT
ACGGCCAGCATCGGCGCCGCCGGGGATAAGGAGAATGTGGCACCGGCCAT
TCCCACGACCATAACTGCAGCGCGGCAGAAGGGCTTGGCTACCCTCCACG
GTATCAGTACAACAAATGTAGTGGTGGTAGACGATGAGGCTGATCAGGCT
GATCCAACCTTCAAGAAGCCTATGATACGCGAAGCGGCGACGGCTTTGCC
ACGGCTTTTGCTCTTCACGGAAAAGGCGGAGGAGGTCTTTATGCTGGGAG
AGGGCCTGCCCGAGAGGGAGGCTCGGCGGAAGCTGGCCCAAGCAGTGATG
GAAGACAGGGGCAACCCCTCAACGTGGTGGCAGCTCTTACAGCACGTCCA
TCTTGTCTTTGGGGAGTCTGATTCGTGCGTGGCCACGGATGCCGCGCACA
TCCGCAAGCTCTACCAGAAGGCCACTCGCATCATCCCCGACTGCCCGAAC
CGAGACAAGGAGGACCCCGCCCTGGTCAACATTTGGCTGGGTTTTGCTGC
CGCCGAGGGACGGGTAACACTTTCTCCAAGGCTGCCTCATACCAAGGCTT
GA
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Synonyms
Publications