jgi.p|Nanoce1779_2|596410, mRNA_6812 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596410
Unique Name	mRNA_6812
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1936
Alignment location	scaffold_17:164113..166048 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596496
Track	FilteredModels2
ProteinId	596410

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:164113..166048 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596410	gene_6812	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596410	mRNA_6812-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6812	CDS_6812	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:164113..166048+
coding sequence from alignment at scaffold_17:164113..166048+

mRNA sequence

>mRNA_6812 ID=mRNA_6812|Name=jgi.p|Nanoce1779_2|596410|organism=Nannochloropsis oceanica|type=mRNA|length=1936bp
ATATTAGGCAAGCCCAGGAGGCGGCAGATGGTCTGGCTAATGTCCGTGTT
CGACTGGCGGCGTCGTTGCGCATTTTGGGAAAGATGAAGGAGGCGCTTGC
CCAGCTTAACACGGCAGTACATGATCTTGATAAGGTCGGGGCGGGCCAGG
AGTCAAGTATGGTGGGCGTGTTGACGGAGAAGGCCGCGTTGTTGTTGGAA
AGCAAGGATTATACACGGGCCCTGGACATGTATGAGGACGCGTTGGAAAG
ACGTCGCAAGTCAGTGCCACGCCAGGACCCGGAGCTCGCTTCCTTGTTGG
TGAGCATGGCAGGAGTGTATGCTGAGAAAGGAGATACGGACGTAGCCCTG
GGAATGCTCATTCAAGCTTACAAACAAATGGCCACAAGCCCTGATTCAGC
TACTGCCCAGGCTACTCATACTGCTGTTACTTCGGTTAGTAAGGCCCCCG
CCTCGTCCTCTTCCACCTCCTCATCCTCCACAACTGCAACTGCGTCCTTT
TCCTTCTCCTCGTCCCTGTCTTCTCCGTCCTCCTCTCCCTCCTCCACCTC
CACCTCCTCCTCCACCTCCTCCACCTCCTCCTCTACTTCCACCCAGTCTG
CTTCTCCTCTCTCCTCCAGACCTACCCGACGGCAAGGACCAGGAGCAGGG
AAAGAACTTCTTCTCATGGCCAATGCCCTCGAACGCATCGGAAAACTTTT
CATCGTCAAGAACCAACTAGATGACGCCTTAATGTGCTACAAAGCCGCGC
ACGAACGCAAAGCCACCGCCCTCGCCCGAGCACATCCCGCCATTGCTTAC
TCCCTCGCATGCATGGCGGGAATTCACGAAAAGCGAGGAGATCACCGCGC
TGCTGCTACTATGCACGCGCGTGCGCTGGAGATACGCAGGGCAGTTCTTC
CCCCGACGTCACTCGATTTGGCCTCGTCGTTGTTTGGATTAGCGAATGCA
CATCAGCGGTTGCGATCTTCGAAATCTGCTTTGTCGGCGTATGAGGAGGT
GGAGACTATCTGGCGGATTAACGCTCATGGAACGAACAATTTGGTGGGGC
TGGGGGATTGCTTGGTCAATATGTCTCGGCCCTTGAAGGCCTTGGGACGG
GAGACGGAGGCGGTGGCGAAGTTGCGAGATGCGGGGGAGGTTTACTTTTC
GGCGGGCCTGTCCAAGGCAGATGTGAGGGTGCAGACGGTGATTTCGAATT
TGAACACGTTGAAGGCGTACGGGCAAAGCAAACTTTTTGGAGAAACGCTC
ATTTCTTCTCGTTCGAGTTCCCGACGAAGAAGAAGTCATCCGGCCAGGCT
CAAGGCAGAGGTGACCAACCGTGGAGATGTCTCAATACACCATGCCCATA
GCAGCACCACCCTAGGAGCGCCTTCGCAACGGCTTGCACAGCAGCCCTTA
CCGGCTAAGAGTAACAGTTTCCCGATCCTAGCTTCGCAATCGTCCTCAAT
GAAATGCAAAAGCAAGGGGGACTCGCGCCCCCGGGGGGTTGAGGAGGCGG
CGGGGCAGAATCAGCAGCGGTGTAGCATCATGTGAAGGAGGTAGGAGACT
ATGACAGGAGGGGCAAATTGAGAATGGTGGGGTTTCAAGACACACAAGGA
AATAGAGACACAGGGAGCATGAGACGAGCTTTGGTCGGTGAAACGACATC
ACTAACATCATCCGTAGCAGCGGCTGGAAAACCCTCACGACCATTTTGAA
GCAAAGTCTGAAAGACATTCACACGGGAAAGGCAAATAAGAAATGATAAG
ACTCGCCAGTAACTAAAAGCAAACATTCTAGAAAGATGGAAAAGCCTGCA
GTCCTAGTAGAGGAATACCGCAACAAAGTTCATTGCTTACCACAAATATA
AGACAGTTAAGAAGATCAAAATTGAAAACAATCGCTCGATCAAACCAATA
ACGTTCACCTATCACGCGTCAGTGTTTTTGTTTCGT

protein sequence of jgi.p|Nanoce1779_2|596410

>mRNA_6812-protein ID=mRNA_6812-protein|Name=jgi.p|Nanoce1779_2|596410|organism=Nannochloropsis oceanica|type=polypeptide|length=484bp
MKEALAQLNTAVHDLDKVGAGQESSMVGVLTEKAALLLESKDYTRALDMY
EDALERRRKSVPRQDPELASLLVSMAGVYAEKGDTDVALGMLIQAYKQMA
TSPDSATAQATHTAVTSVSKAPASSSSTSSSSTTATASFSFSSSLSSPSS
SPSSTSTSSSTSSTSSSTSTQSASPLSSRPTRRQGPGAGKELLLMANALE
RIGKLFIVKNQLDDALMCYKAAHERKATALARAHPAIAYSLACMAGIHEK
RGDHRAAATMHARALEIRRAVLPPTSLDLASSLFGLANAHQRLRSSKSAL
SAYEEVETIWRINAHGTNNLVGLGDCLVNMSRPLKALGRETEAVAKLRDA
GEVYFSAGLSKADVRVQTVISNLNTLKAYGQSKLFGETLISSRSSSRRRR
SHPARLKAEVTNRGDVSIHHAHSSTTLGAPSQRLAQQPLPAKSNSFPILA
SQSSSMKCKSKGDSRPRGVEEAAGQNQQRCSIM*

mRNA from alignment at scaffold_17:164113..166048+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6812 ID=mRNA_6812|Name=jgi.p|Nanoce1779_2|596410|organism=Nannochloropsis oceanica|type=mRNA|length=1936bp|location=Sequence derived from alignment at scaffold_17:164113..166048+ (Nannochloropsis oceanica)
ATATTAGGCAAGCCCAGGAGGCGGCAGATGGTCTGGCTAATGTCCGTGTT
CGACTGGCGGCGTCGTTGCGCATTTTGGGAAAGATGAAGGAGGCGCTTGC
CCAGCTTAACACGGCAGTACATGATCTTGATAAGGTCGGGGCGGGCCAGG
AGTCAAGTATGGTGGGCGTGTTGACGGAGAAGGCCGCGTTGTTGTTGGAA
AGCAAGGATTATACACGGGCCCTGGACATGTATGAGGACGCGTTGGAAAG
ACGTCGCAAGTCAGTGCCACGCCAGGACCCGGAGCTCGCTTCCTTGTTGG
TGAGCATGGCAGGAGTGTATGCTGAGAAAGGAGATACGGACGTAGCCCTG
GGAATGCTCATTCAAGCTTACAAACAAATGGCCACAAGCCCTGATTCAGC
TACTGCCCAGGCTACTCATACTGCTGTTACTTCGGTTAGTAAGGCCCCCG
CCTCGTCCTCTTCCACCTCCTCATCCTCCACAACTGCAACTGCGTCCTTT
TCCTTCTCCTCGTCCCTGTCTTCTCCGTCCTCCTCTCCCTCCTCCACCTC
CACCTCCTCCTCCACCTCCTCCACCTCCTCCTCTACTTCCACCCAGTCTG
CTTCTCCTCTCTCCTCCAGACCTACCCGACGGCAAGGACCAGGAGCAGGG
AAAGAACTTCTTCTCATGGCCAATGCCCTCGAACGCATCGGAAAACTTTT
CATCGTCAAGAACCAACTAGATGACGCCTTAATGTGCTACAAAGCCGCGC
ACGAACGCAAAGCCACCGCCCTCGCCCGAGCACATCCCGCCATTGCTTAC
TCCCTCGCATGCATGGCGGGAATTCACGAAAAGCGAGGAGATCACCGCGC
TGCTGCTACTATGCACGCGCGTGCGCTGGAGATACGCAGGGCAGTTCTTC
CCCCGACGTCACTCGATTTGGCCTCGTCGTTGTTTGGATTAGCGAATGCA
CATCAGCGGTTGCGATCTTCGAAATCTGCTTTGTCGGCGTATGAGGAGGT
GGAGACTATCTGGCGGATTAACGCTCATGGAACGAACAATTTGGTGGGGC
TGGGGGATTGCTTGGTCAATATGTCTCGGCCCTTGAAGGCCTTGGGACGG
GAGACGGAGGCGGTGGCGAAGTTGCGAGATGCGGGGGAGGTTTACTTTTC
GGCGGGCCTGTCCAAGGCAGATGTGAGGGTGCAGACGGTGATTTCGAATT
TGAACACGTTGAAGGCGTACGGGCAAAGCAAACTTTTTGGAGAAACGCTC
ATTTCTTCTCGTTCGAGTTCCCGACGAAGAAGAAGTCATCCGGCCAGGCT
CAAGGCAGAGGTGACCAACCGTGGAGATGTCTCAATACACCATGCCCATA
GCAGCACCACCCTAGGAGCGCCTTCGCAACGGCTTGCACAGCAGCCCTTA
CCGGCTAAGAGTAACAGTTTCCCGATCCTAGCTTCGCAATCGTCCTCAAT
GAAATGCAAAAGCAAGGGGGACTCGCGCCCCCGGGGGGTTGAGGAGGCGG
CGGGGCAGAATCAGCAGCGGTGTAGCATCATGTGAAGGAGGTAGGAGACT
ATGACAGGAGGGGCAAATTGAGAATGGTGGGGTTTCAAGACACACAAGGA
AATAGAGACACAGGGAGCATGAGACGAGCTTTGGTCGGTGAAACGACATC
ACTAACATCATCCGTAGCAGCGGCTGGAAAACCCTCACGACCATTTTGAA
GCAAAGTCTGAAAGACATTCACACGGGAAAGGCAAATAAGAAATGATAAG
ACTCGCCAGTAACTAAAAGCAAACATTCTAGAAAGATGGAAAAGCCTGCA
GTCCTAGTAGAGGAATACCGCAACAAAGTTCATTGCTTACCACAAATATA
AGACAGTTAAGAAGATCAAAATTGAAAACAATCGCTCGATCAAACCAATA
ACGTTCACCTATCACGCGTCAGTGTTTTTGTTTCGT

Coding sequence (CDS) from alignment at scaffold_17:164113..166048+

>mRNA_6812 ID=mRNA_6812|Name=jgi.p|Nanoce1779_2|596410|organism=Nannochloropsis oceanica|type=CDS|length=1452bp|location=Sequence derived from alignment at scaffold_17:164113..166048+ (Nannochloropsis oceanica)
ATGAAGGAGGCGCTTGCCCAGCTTAACACGGCAGTACATGATCTTGATAA
GGTCGGGGCGGGCCAGGAGTCAAGTATGGTGGGCGTGTTGACGGAGAAGG
CCGCGTTGTTGTTGGAAAGCAAGGATTATACACGGGCCCTGGACATGTAT
GAGGACGCGTTGGAAAGACGTCGCAAGTCAGTGCCACGCCAGGACCCGGA
GCTCGCTTCCTTGTTGGTGAGCATGGCAGGAGTGTATGCTGAGAAAGGAG
ATACGGACGTAGCCCTGGGAATGCTCATTCAAGCTTACAAACAAATGGCC
ACAAGCCCTGATTCAGCTACTGCCCAGGCTACTCATACTGCTGTTACTTC
GGTTAGTAAGGCCCCCGCCTCGTCCTCTTCCACCTCCTCATCCTCCACAA
CTGCAACTGCGTCCTTTTCCTTCTCCTCGTCCCTGTCTTCTCCGTCCTCC
TCTCCCTCCTCCACCTCCACCTCCTCCTCCACCTCCTCCACCTCCTCCTC
TACTTCCACCCAGTCTGCTTCTCCTCTCTCCTCCAGACCTACCCGACGGC
AAGGACCAGGAGCAGGGAAAGAACTTCTTCTCATGGCCAATGCCCTCGAA
CGCATCGGAAAACTTTTCATCGTCAAGAACCAACTAGATGACGCCTTAAT
GTGCTACAAAGCCGCGCACGAACGCAAAGCCACCGCCCTCGCCCGAGCAC
ATCCCGCCATTGCTTACTCCCTCGCATGCATGGCGGGAATTCACGAAAAG
CGAGGAGATCACCGCGCTGCTGCTACTATGCACGCGCGTGCGCTGGAGAT
ACGCAGGGCAGTTCTTCCCCCGACGTCACTCGATTTGGCCTCGTCGTTGT
TTGGATTAGCGAATGCACATCAGCGGTTGCGATCTTCGAAATCTGCTTTG
TCGGCGTATGAGGAGGTGGAGACTATCTGGCGGATTAACGCTCATGGAAC
GAACAATTTGGTGGGGCTGGGGGATTGCTTGGTCAATATGTCTCGGCCCT
TGAAGGCCTTGGGACGGGAGACGGAGGCGGTGGCGAAGTTGCGAGATGCG
GGGGAGGTTTACTTTTCGGCGGGCCTGTCCAAGGCAGATGTGAGGGTGCA
GACGGTGATTTCGAATTTGAACACGTTGAAGGCGTACGGGCAAAGCAAAC
TTTTTGGAGAAACGCTCATTTCTTCTCGTTCGAGTTCCCGACGAAGAAGA
AGTCATCCGGCCAGGCTCAAGGCAGAGGTGACCAACCGTGGAGATGTCTC
AATACACCATGCCCATAGCAGCACCACCCTAGGAGCGCCTTCGCAACGGC
TTGCACAGCAGCCCTTACCGGCTAAGAGTAACAGTTTCCCGATCCTAGCT
TCGCAATCGTCCTCAATGAAATGCAAAAGCAAGGGGGACTCGCGCCCCCG
GGGGGTTGAGGAGGCGGCGGGGCAGAATCAGCAGCGGTGTAGCATCATGT
GA

Synonyms

Publications