jgi.p|Nanoce1779_2|113635, mRNA_6811 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|113635
Unique Name	mRNA_6811
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2069
Alignment location	scaffold_17:158832..161150 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	113721
Track	FilteredModels2
ProteinId	113635

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:158832..161150 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|113635	gene_6811	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|113635	mRNA_6811-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6811	CDS_6811	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:158832..161150+
coding sequence from alignment at scaffold_17:158832..161150+

mRNA sequence

>mRNA_6811 ID=mRNA_6811|Name=jgi.p|Nanoce1779_2|113635|organism=Nannochloropsis oceanica|type=mRNA|length=2069bp
TCCCTTTGGTTCACTAGACTCGGCCGACCCGAAGCGATAGAGGAAGCGCT
GTCCCTGATAGCACGCTCCTGCACGACGGGCTTGCAGGACCGAAATACTG
TCATTCAAGTCGTAAATACCCAGCGTTACCTGGTCCAGGATGACTCTTGA
CGTGGCATCATCGCCTGTGTCCGCAGGGAGAGGTTGATACGCCTGCAGCC
CTAGCGTTTGGAACATGGCGGCACTGAGACCGTACATGCAAGTATTTCCA
GAGGTGACAGCGCCAGCCGTATCTAATAAAAGAGGCTGCGGCAATTCTGG
TGGCAAGCCCAAGGACAACTCCTCTTCCCAGAACGCTTCGTCTTGCATCT
TGCGCATCTTCACGTCTTTGCCTCCTGACCTGCTACACTTGGCGCTCCCC
TTTCTCGACGGTACTGCTCTTGGACGATGGGAACAGACATGCCAGGCAGC
GTTGACCTTGGTAGTGCACAGAAATGAGGAGCTATGGCATGCGGCAGCAG
CGCGAGAATATCAATGGTTCAACCCCGTCAAGCCCTCTTATCTTTCTTTC
AAACAATTCTACGTCGCCTTGCGCAAAAGCTCCTGGCCCACGGAGCCGAG
CATGAATACTGGTATTATCGCTGATGAGGGTGTCCATCGGCCCGGCAAAT
TGTACGTAGTAGGAGGCTCCTCTGATCGCCCCATGCCCCTGCAGACGTGC
GAATTCTTCAACGACTTGGGCGGAACCAAGAAACTACCCATGAAATCCCC
CCCCCCCTTCTCTCTGTATCCCATCGCGCACTTGCACCAGAAACGATCCG
CGCCGGGTGTGGCTCGGGATCATGAAGATGGAGTGTGGGCCGTCGGGGGA
TGGTCGGGGTCGGCTGCTTTGAATACCGTTGAAAGGCTGGGAGTGAACGT
GAAGGAAATGATGACAACAAAGTCGAGCGCAGATACGATTAATAGGACGC
AGGATATGATCCCGAGGATGCAGACTTTGACCATAGTTCATAACGCGACG
ACAATGGTGACCAGTAGCAGCAGCAGCACGATCAGCGGCGGGAGCAGCAG
CAACAGCAACGAACGAACAACTCCTCCGACCATCGCCACTACCCTCTGTC
GACGCGAGGCACAGTGGAATAAAAAGCAAGAACTTCAGACTGCCCGTTGC
TTTCTCGCTTCCATTACGGACCTTCAAGGCCGCTTGTATGCCCTGGGAGG
AGGAGAGAGCATCTGGCAAGGCGCACGTGTTTTAAATACGACTGAAATTC
TCGATGACCCCCTTGCCTCTGCCTGTGCCTGGCGAATGGGCCCCGCCATG
ATGGAAGCTCGTTGCGGCTTATCAGCGGCGTTGGACACGCATGGTCATAT
TTATGTTGCGGGAGGATATGGAGGTGGGACGCGGTATTCATCTTCGGTGG
AAGTGCTTCGTGTGGGTGATGATTCGGAGGGGGCAACGCGCGGATGGCTA
GCTGATGCGGTGCCACCGATGCAAGTGGCACGGACAGGGTTTGGCTTGGC
ATTCGGTCCGGATCGTGGTCTGGTGGCGGTGGGCGGGTCGCCAGACGGTT
TGCACAGCCATCGGACAGCAGAGCGGTACGACGACCGGGAAGGCCGTTGG
AGGTGGTTGCCGAGAATGATGACGCCTCGCGGTTACTGCGCGGTGGCATT
TGGGACGTCGGGGTTGCTCTATGTGGTGGGAGGAGAGGCGGGCGACGCGA
ACGAAAATGCCAGGAATCCCGTGGTCGAAATTTTTGATCCACGGGCAGAT
CGGTGGCGGGCTTGGGTGGGGCCAGGGGATCCGGGGAAGGATGGGATGGA
CCGGGTAGATTTGGGGTTGGTCTGGGCGCTGGTGTGAAAAGAAAGAATGG
AGGCGGAATGGACTGTTTTGAAATATGACCAAGGGTGTCGACTGTTTGAA
GAGATGTAGAATGCAGCTCACTGGCATTGGAGGACAGGCTGTCTCGCATG
TTGTACAAAAGAGTGTACTTTTAAGTACACAGAAATGGGAGGGGGAGATT
TTGTTGTTCGGTTTTTCTGATGTCACACCAGACACGTCAAGGCATACAAT
TGACTCATCAAAGATTTCG

protein sequence of jgi.p|Nanoce1779_2|113635

>mRNA_6811-protein ID=mRNA_6811-protein|Name=jgi.p|Nanoce1779_2|113635|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp
MAALRPYMQVFPEVTAPAVSNKRGCGNSGGKPKDNSSSQNASSCILRIFT
SLPPDLLHLALPFLDGTALGRWEQTCQAALTLVVHRNEELWHAAAAREYQ
WFNPVKPSYLSFKQFYVALRKSSWPTEPSMNTGIIADEGVHRPGKLYVVG
GSSDRPMPLQTCEFFNDLGGTKKLPMKSPPPFSLYPIAHLHQKRSAPGVA
RDHEDGVWAVGGWSGSAALNTVERLGVNVKEMMTTKSSADTINRTQDMIP
RMQTLTIVHNATTMVTSSSSSTISGGSSSNSNERTTPPTIATTLCRREAQ
WNKKQELQTARCFLASITDLQGRLYALGGGESIWQGARVLNTTEILDDPL
ASACAWRMGPAMMEARCGLSAALDTHGHIYVAGGYGGGTRYSSSVEVLRV
GDDSEGATRGWLADAVPPMQVARTGFGLAFGPDRGLVAVGGSPDGLHSHR
TAERYDDREGRWRWLPRMMTPRGYCAVAFGTSGLLYVVGGEAGDANENAR
NPVVEIFDPRADRWRAWVGPGDPGKDGMDRVDLGLVWALV*

mRNA from alignment at scaffold_17:158832..161150+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6811 ID=mRNA_6811|Name=jgi.p|Nanoce1779_2|113635|organism=Nannochloropsis oceanica|type=mRNA|length=2319bp|location=Sequence derived from alignment at scaffold_17:158832..161150+ (Nannochloropsis oceanica)
TCCCTTTGGTTCACTAGACTCGGCCGACCCGAAGCGATAGAGGAAGCGGC
CTACAATAACAAAATAGCGGGACTGCCAGCATGGCTTTAAAAGCCCACAA
CACCGCTCCCTCTTCTTGGAAAGCTGTCCCTGATAGCACGCTCCTGCACG
ACGGGCTTGCAGGACCGAAATACTGTCATTCAAGTCGTAAATACCCAGCG
TTACCTGGTCCAGGATGACTCTTGACGTGGCATCATCGCCTGTGTCCGCA
GGGAGAGGTTGATACGCCTGCAGCCCTAGCGTTTGGAACATGGCGGCACT
GAGGTAACAAAAGAATACTGCTTCCCCCTCCTATCGAATGTGTGCGTGTG
ATTGTAGGAAGGAGTGTACGTGAATGGAAGATGACCGACAACCTCCCCTA
CCTGAAGCATAATCCATCTTACACATAAGCCCAGCGCACTTATCTCTGCT
TTATTTCTCGTGCTCAAATCACGCACAGACCGTACATGCAAGTATTTCCA
GAGGTGACAGCGCCAGCCGTATCTAATAAAAGAGGCTGCGGCAATTCTGG
TGGCAAGCCCAAGGACAACTCCTCTTCCCAGAACGCTTCGTCTTGCATCT
TGCGCATCTTCACGTCTTTGCCTCCTGACCTGCTACACTTGGCGCTCCCC
TTTCTCGACGGTACTGCTCTTGGACGATGGGAACAGACATGCCAGGCAGC
GTTGACCTTGGTAGTGCACAGAAATGAGGAGCTATGGCATGCGGCAGCAG
CGCGAGAATATCAATGGTTCAACCCCGTCAAGCCCTCTTATCTTTCTTTC
AAACAATTCTACGTCGCCTTGCGCAAAAGCTCCTGGCCCACGGAGCCGAG
CATGAATACTGGTATTATCGCTGATGAGGGTGTCCATCGGCCCGGCAAAT
TGTACGTAGTAGGAGGCTCCTCTGATCGCCCCATGCCCCTGCAGACGTGC
GAATTCTTCAACGACTTGGGCGGAACCAAGAAACTACCCATGAAATCCCC
CCCCCCCTTCTCTCTGTATCCCATCGCGCACTTGCACCAGAAACGATCCG
CGCCGGGTGTGGCTCGGGATCATGAAGATGGAGTGTGGGCCGTCGGGGGA
TGGTCGGGGTCGGCTGCTTTGAATACCGTTGAAAGGCTGGGAGTGAACGT
GAAGGAAATGATGACAACAAAGTCGAGCGCAGATACGATTAATAGGACGC
AGGATATGATCCCGAGGATGCAGACTTTGACCATAGTTCATAACGCGACG
ACAATGGTGACCAGTAGCAGCAGCAGCACGATCAGCGGCGGGAGCAGCAG
CAACAGCAACGAACGAACAACTCCTCCGACCATCGCCACTACCCTCTGTC
GACGCGAGGCACAGTGGAATAAAAAGCAAGAACTTCAGACTGCCCGTTGC
TTTCTCGCTTCCATTACGGACCTTCAAGGCCGCTTGTATGCCCTGGGAGG
AGGAGAGAGCATCTGGCAAGGCGCACGTGTTTTAAATACGACTGAAATTC
TCGATGACCCCCTTGCCTCTGCCTGTGCCTGGCGAATGGGCCCCGCCATG
ATGGAAGCTCGTTGCGGCTTATCAGCGGCGTTGGACACGCATGGTCATAT
TTATGTTGCGGGAGGATATGGAGGTGGGACGCGGTATTCATCTTCGGTGG
AAGTGCTTCGTGTGGGTGATGATTCGGAGGGGGCAACGCGCGGATGGCTA
GCTGATGCGGTGCCACCGATGCAAGTGGCACGGACAGGGTTTGGCTTGGC
ATTCGGTCCGGATCGTGGTCTGGTGGCGGTGGGCGGGTCGCCAGACGGTT
TGCACAGCCATCGGACAGCAGAGCGGTACGACGACCGGGAAGGCCGTTGG
AGGTGGTTGCCGAGAATGATGACGCCTCGCGGTTACTGCGCGGTGGCATT
TGGGACGTCGGGGTTGCTCTATGTGGTGGGAGGAGAGGCGGGCGACGCGA
ACGAAAATGCCAGGAATCCCGTGGTCGAAATTTTTGATCCACGGGCAGAT
CGGTGGCGGGCTTGGGTGGGGCCAGGGGATCCGGGGAAGGATGGGATGGA
CCGGGTAGATTTGGGGTTGGTCTGGGCGCTGGTGTGAAAAGAAAGAATGG
AGGCGGAATGGACTGTTTTGAAATATGACCAAGGGTGTCGACTGTTTGAA
GAGATGTAGAATGCAGCTCACTGGCATTGGAGGACAGGCTGTCTCGCATG
TTGTACAAAAGAGTGTACTTTTAAGTACACAGAAATGGGAGGGGGAGATT
TTGTTGTTCGGTTTTTCTGATGTCACACCAGACACGTCAAGGCATACAAT
TGACTCATCAAAGATTTCG

Coding sequence (CDS) from alignment at scaffold_17:158832..161150+

>mRNA_6811 ID=mRNA_6811|Name=jgi.p|Nanoce1779_2|113635|organism=Nannochloropsis oceanica|type=CDS|length=3246bp|location=Sequence derived from alignment at scaffold_17:158832..161150+ (Nannochloropsis oceanica)
ATGGCGGCACTGAGACCGTACATGCAAGTATTTCCAGAGGTGACAGCGCC
AGCCGTATCTAATAAAAGAGGCTGCGGCAATTCTGGTGGCAAGCCCAAGG
ACAACTCCTCTTCCCAGAACGCTTCGTCTTGCATCTTGCGCATCTTCACG
TCTTTGCCTCCTGACCTGCTACACTTGGCGCTCCCCTTTCTCGACGGTAC
TGCTCTTGGACGATGGGAACAGACATGCCAGGCAGCGTTGACCTTGGTAG
TGCACAGAAATGAGGAGCTATGGCATGCGGCAGCAGCGCGAGAATATCAA
TGGTTCAACCCCGTCAAGCCCTCTTATCTTTCTTTCAAACAATTCTACGT
CGCCTTGCGCAAAAGCTCCTGGCCCACGGAGCCGAGCATGAATACTGGTA
TTATCGCTGATGAGGGTGTCCATCGGCCCGGCAAATTGTACGTAGTAGGA
GGCTCCTCTGATCGCCCCATGCCCCTGCAGACGTGCGAATTCTTCAACGA
CTTGGGCGGAACCAAGAAACTACCCATGAAATCCCCCCCCCCCTTCTCTC
TGTATCCCATCGCGCACTTGCACCAGAAACGATCCGCGCCGGGTGTGGCT
CGGGATCATGAAGATGGAGTGTGGGCCGTCGGGGGATGGTCGGGGTCGGC
TGCTTTGAATACCGTTGAAAGGCTGGGAGTGAACGTGAAGGAAATGATGA
CAACAAAGTCGAGCGCAGATACGATTAATAGGACGCAGGATATGATCCCG
AGGATGCAGACTTTGACCATAGTTCATAACGCGACGACAATGGTGACCAG
TAGCAGCAGCAGCACGATCAGCGGCGGGAGCAGCAGCAACAGCAACGAAC
GAACAACTCCTCCGACCATCGCCACTACCCTCTGTCGACGCGAGGCACAG
TGGAATAAAAAGCAAGAACTTCAGACTGCCCGTTGCTTTCTCGCTTCCAT
TACGGACCTTCAAGGCCGCTTGTATGCCCTGGGAGGAGGAGAGAGCATCT
GGCAAGGCGCACGTGTTTTAAATACGACTGAAATTCTCGATGACCCCCTT
GCCTCTGCCTGTGCCTGGCGAATGGGCCCCGCCATGATGGAAGCTCGTTG
CGGCTTATCAGCGGCGTTGGACACGCATGGTCATATTTATGTTGCGGGAG
GATATGGAGGTGGGACGCGGTATTCATCTTCGGTGGAAGTGCTTCGTGTG
GGTGATGATTCGGAGGGGGCAACGCGCGGATGGCTAGCTGATGCGGTGCC
ACCGATGCAAGTGGCACGGACAGGGTTTGGCTTGGCATTCGGTCCGGATC
GTGGTCTGGTGGCGGTGGGCGGGTCGCCAGACGGTTTGCACAGCCATCGG
ACAGCAGAGCGGTACGACGACCGGGAAGGCCGTTGGAGGTGGTTGCCGAG
AATGATGACGCCTCGCGGTTACTGCGCGGTGGCATTTGGGACGTCGGGGT
TGCTCTATGTGGTGGGAGGAGAGGCGGGCGACGCGAACGAAAATGCCAGG
AATCCCGTGGTCGAAATTTTTGATCCACGGGCAGATCGGTGGCGGGCTTG
GGTGGGGCCAGGGGATCCGGGGAAGGATGGGATGGACCGGGTAGATTTGG
GGTTGGTCTGGGCGCTGGTGTGAATGGCGGCACTGAGACCGTACATGCAA
GTATTTCCAGAGGTGACAGCGCCAGCCGTATCTAATAAAAGAGGCTGCGG
CAATTCTGGTGGCAAGCCCAAGGACAACTCCTCTTCCCAGAACGCTTCGT
CTTGCATCTTGCGCATCTTCACGTCTTTGCCTCCTGACCTGCTACACTTG
GCGCTCCCCTTTCTCGACGGTACTGCTCTTGGACGATGGGAACAGACATG
CCAGGCAGCGTTGACCTTGGTAGTGCACAGAAATGAGGAGCTATGGCATG
CGGCAGCAGCGCGAGAATATCAATGGTTCAACCCCGTCAAGCCCTCTTAT
CTTTCTTTCAAACAATTCTACGTCGCCTTGCGCAAAAGCTCCTGGCCCAC
GGAGCCGAGCATGAATACTGGTATTATCGCTGATGAGGGTGTCCATCGGC
CCGGCAAATTGTACGTAGTAGGAGGCTCCTCTGATCGCCCCATGCCCCTG
CAGACGTGCGAATTCTTCAACGACTTGGGCGGAACCAAGAAACTACCCAT
GAAATCCCCCCCCCCCTTCTCTCTGTATCCCATCGCGCACTTGCACCAGA
AACGATCCGCGCCGGGTGTGGCTCGGGATCATGAAGATGGAGTGTGGGCC
GTCGGGGGATGGTCGGGGTCGGCTGCTTTGAATACCGTTGAAAGGCTGGG
AGTGAACGTGAAGGAAATGATGACAACAAAGTCGAGCGCAGATACGATTA
ATAGGACGCAGGATATGATCCCGAGGATGCAGACTTTGACCATAGTTCAT
AACGCGACGACAATGGTGACCAGTAGCAGCAGCAGCACGATCAGCGGCGG
GAGCAGCAGCAACAGCAACGAACGAACAACTCCTCCGACCATCGCCACTA
CCCTCTGTCGACGCGAGGCACAGTGGAATAAAAAGCAAGAACTTCAGACT
GCCCGTTGCTTTCTCGCTTCCATTACGGACCTTCAAGGCCGCTTGTATGC
CCTGGGAGGAGGAGAGAGCATCTGGCAAGGCGCACGTGTTTTAAATACGA
CTGAAATTCTCGATGACCCCCTTGCCTCTGCCTGTGCCTGGCGAATGGGC
CCCGCCATGATGGAAGCTCGTTGCGGCTTATCAGCGGCGTTGGACACGCA
TGGTCATATTTATGTTGCGGGAGGATATGGAGGTGGGACGCGGTATTCAT
CTTCGGTGGAAGTGCTTCGTGTGGGTGATGATTCGGAGGGGGCAACGCGC
GGATGGCTAGCTGATGCGGTGCCACCGATGCAAGTGGCACGGACAGGGTT
TGGCTTGGCATTCGGTCCGGATCGTGGTCTGGTGGCGGTGGGCGGGTCGC
CAGACGGTTTGCACAGCCATCGGACAGCAGAGCGGTACGACGACCGGGAA
GGCCGTTGGAGGTGGTTGCCGAGAATGATGACGCCTCGCGGTTACTGCGC
GGTGGCATTTGGGACGTCGGGGTTGCTCTATGTGGTGGGAGGAGAGGCGG
GCGACGCGAACGAAAATGCCAGGAATCCCGTGGTCGAAATTTTTGATCCA
CGGGCAGATCGGTGGCGGGCTTGGGTGGGGCCAGGGGATCCGGGGAAGGA
TGGGATGGACCGGGTAGATTTGGGGTTGGTCTGGGCGCTGGTGTGA

Synonyms

Publications