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Properties
| Property Name | Value |
|---|
| TranscriptId | 636088 |
| Track | FilteredModels2 |
| ProteinId | 636002 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:177696..179590 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_681 ID=mRNA_681|Name=jgi.p|Nanoce1779_2|636002|organism=Nannochloropsis oceanica|type=mRNA|length=1137bp
ATGCCCTTTTCACATCCCGAGGAATCAAATCAAATGCTGAAAGGTGGGGA
CTGCAGAACGGTCTTACACCCGACGGCTCAGCAAATCCATTTGAACCAGC
ACCGCCCTTCATCCTTGCCGCTGGGGATCGAGAATAACGTAGAGTGCGAG
GGCACCAGCAGCCACAGCAGCAGCCTGTCGCAAGACGACACACTGATGTT
TCATCAGCTCGCCAATCTCAAGGATCAAGATGAATCTGATTCCGCGAGCC
CCGCCAACACCACCTCCTCCTCCACCTCTAACTCCGAAAGCGGGGGCTCT
AAAGGTTTCAAGAAACGCGCTTGGACCAACACTGAAGACGACACCTTGCG
GGACCTAGTTGAGCAGCACGGTGCCAAGGATTGGAATAACATTTCTTCCC
AGCTCCCCCACCGCTCGGCAAAGCAGTGCTGTGAACGATGGCATAATTAT
CTGAAGCCCGATATTCGCAAGGATGCCTGGTGTGCACCGGAGGACCAGAT
CATTCTAGATTACCACCAAGCGTTTTGTAATAAGTGGAGCAAGATCGCCG
AGTTCTTGCCGGGGCGAACGGGGAATGCTGTCAAGAATCGATATTATTGC
TTAATGCGTCGGGACCGGAAGAATACAGGCTCGGCAGGGGCCTCGAGGGG
ACACAACAAGCACAACAACAACAACAGCAGCAACAGCAGCAGCAACAGCA
ACAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGG
GCATTCACACCCATCCTCCAGGCCAACATCTCCCCCCCGGCCACCCTCCG
CCCCTGGGACTTCCCATCATCGCAAGCACCGGGGACGCTCAAGGCAACCA
TTATCCGCTACTCCAAGGCGCCCCCAACACCTCCACCTTCGGCTCTCAAC
AGCATCTGCAGCATTTACCACAAAGACAGCCGCACCACCCCCAGCACCAG
CATCAGCACTACGCCCATAGCCTCCAATGCTCTCCAACGGACGACCCAAC
GGAAGTCCCTCCCTGGGGCTCTTCATGGGTACCACCAGCCACCTCTGGCC
AGCAGCAGCAGCAGCAGTTCAGCAGTAGCAACTGTGGCAGCATCGTTAGT
AGCTGTGGAGGAGGACAAGGAGGACAAGGAGGGCTAG back to topprotein sequence of jgi.p|Nanoce1779_2|636002 >mRNA_681-protein ID=mRNA_681-protein|Name=jgi.p|Nanoce1779_2|636002|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MPFSHPEESNQMLKGGDCRTVLHPTAQQIHLNQHRPSSLPLGIENNVECE
GTSSHSSSLSQDDTLMFHQLANLKDQDESDSASPANTTSSSTSNSESGGS
KGFKKRAWTNTEDDTLRDLVEQHGAKDWNNISSQLPHRSAKQCCERWHNY
LKPDIRKDAWCAPEDQIILDYHQAFCNKWSKIAEFLPGRTGNAVKNRYYC
LMRRDRKNTGSAGASRGHNKHNNNNSSNSSSNSNSSSSSSNSNSSSSSSR
AFTPILQANISPPATLRPWDFPSSQAPGTLKATIIRYSKAPPTPPPSALN
SICSIYHKDSRTTPSTSISTTPIASNALQRTTQRKSLPGALHGYHQPPLA
SSSSSSSAVATVAASLVAVEEDKEDKEG* back to topmRNA from alignment at scaffold_2:177696..179590- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_681 ID=mRNA_681|Name=jgi.p|Nanoce1779_2|636002|organism=Nannochloropsis oceanica|type=mRNA|length=1895bp|location=Sequence derived from alignment at scaffold_2:177696..179590- (Nannochloropsis oceanica)
ATGCCCTTTTCACATCCCGAGGAATCAAATCAAGTAAGTCAGTCGACCGG
AGTTCACCCCCAGCGAAAAGTGGGCGCAAAGGAGAACACGCATAGTCTGT
CTGGTTTAGAGGTTTTCATAGACCTTAAGTATATCTAGGCATAGTAACGA
GATCCACATTGCGCTCGCACTCAACCCCTTTTCCAACACTCGCAGATGCT
GAAAGGTGGGGACTGCAGAACGGTCTTACACCCGACGGCTCAGCAAATCC
ATTTGAACCAGCACCGCCCTTCATCCTTGCCGCTGGGGATCGAGAATAAC
GTAGAGTGCGAGGGCACCAGCAGCCACAGCAGCAGCCTGTCGCAAGACGA
CACACTGATGTTTCATCAGCTCGCCAATCTCAAGGTAAGTGGAGGCGCGA
AGTGTGCAAGCACAAGGTCCATAGTATTTAGTCGGTGAGAAAACTTACTG
CTTTGCAGTCCCAGGCAATTAAGGGCCTGTAAATATGTATGGCGGTACAC
GTCTGATGCAAGCGACTTTTCCATAGGAAAAGCTTTGGGTTTTTGATGCG
TCGCATCAGCAAACCATGCGGCTTTTGTGGGGGGGGGAAGCTGTCTCCCT
TCTTCTCTTTCGTATGACTCATCTGCCCAAACCTTGTTTCTCCCTTCGAC
TTGATTTCCTGCCGTCGGACATCAAATTCGGGCTTATCACTGTCGTTTTC
CACGCCTTCTTCTGCAAGCTCACAGACCCTGTGCGTCGGTCCCGCCGGTG
GCCTTACCTTTCTTGCGACTCTATGTATAGCCCTCCCTCACGTATCAACC
ATCCTCCCTCCCTCCGTCCCACCATACAGGATCAAGATGAATCTGATTCC
GCGAGCCCCGCCAACACCACCTCCTCCTCCACCTCTAACTCCGAAAGCGG
GGGCTCTAAAGGTTTCAAGAAACGCGCTTGGACCAACACTGAAGACGACA
CCTTGCGGGACCTAGTTGAGCAGCACGGTGCCAAGGATTGGAATAACATT
TCTTCCCAGCTCCCCCACCGCTCGGCAAAGCAGTGCTGTGAACGATGGCA
TAATTATCTGAAGCCCGATATTCGCAAGGATGCCTGGTGTGCACCGGAGG
ACCAGATCATTCTAGATTACCACCAAGCGTTTTGTAATAAGTGGAGCAAG
ATCGCCGAGTTCTTGCCGGGGCGAACGGGGAATGCTGTCAAGAATCGATA
TTATTGCTTAATGCGTCGGGACCGGAAGAATACAGGCTCGGCAGGGGCCT
CGAGGGGAGTAGGGCAAGGGGCAGCATCATTCGGTCACGCCCGTGGTGGG
GGTGGAGTGGGGGATGGGAGATCTGGCGGGGCGGGAGGAGAGAGTACGCT
ACTATATCCGTGGGCGCGGCCACCATTGTCCCCTTCTCATTTGCTGCAGC
AACAACAAGCACAACAAGCACAACAACAACAACAGCAGCAACAGCAGCAG
CAACAGCAACAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGCAGCAGCA
GCAGCAGGGCATTCACACCCATCCTCCAGGCCAACATCTCCCCCCCGGCC
ACCCTCCGCCCCTGGGACTTCCCATCATCGCAAGCACCGGGGACGCTCAA
GGCAACCATTATCCGCTACTCCAAGGCGCCCCCAACACCTCCACCTTCGG
CTCTCAACAGCATCTGCAGCATTTACCACAAAGACAGCCGCACCACCCCC
AGCACCAGCATCAGCACTACGCCCATAGCCTCCAATGCTCTCCAACGGAC
GACCCAACGGAAGTCCCTCCCTGGGGCTCTTCATGGGTACCACCAGCCAC
CTCTGGCCAGCAGCAGCAGCAGCAGTTCAGCAGTAGCAACTGTGGCAGCA
TCGTTAGTAGCTGTGGAGGAGGACAAGGAGGACAAGGAGGGCTAG back to topCoding sequence (CDS) from alignment at scaffold_2:177696..179590- >mRNA_681 ID=mRNA_681|Name=jgi.p|Nanoce1779_2|636002|organism=Nannochloropsis oceanica|type=CDS|length=4548bp|location=Sequence derived from alignment at scaffold_2:177696..179590- (Nannochloropsis oceanica)
CACAACAAGCACAACAACAACAACAGCAGCAACAGCAGCAGCAACAGCAA
CAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGGG
CATTCACACCCATCCTCCAGGCCAACATCTCCCCCCCGGCCACCCTCCGC
CCCTGGGACTTCCCATCATCGCAAGCACCGGGGACGCTCAAGGCAACCAT
TATCCGCTACTCCAAGGCGCCCCCAACACCTCCACCTTCGGCTCTCAACA
GCATCTGCAGCATTTACCACAAAGACAGCCGCACCACCCCCAGCACCAGC
ATCAGCACTACGCCCATAGCCTCCAATGCTCTCCAACGGACGACCCAACG
GAAGTCCCTCCCTGGGGCTCTTCATGGGTACCACCAGCCACCTCTGGCCA
GCAGCAGCAGCAGCAGTTCAGCAGTAGCAACTGTGGCAGCATCGTTAGTA
GCTGTGGAGGAGGACAAGGAGGACAAGGAGGGCTAGGATCAAGATGAATC
TGATTCCGCGAGCCCCGCCAACACCACCTCCTCCTCCACCTCTAACTCCG
AAAGCGGGGGCTCTAAAGGTTTCAAGAAACGCGCTTGGACCAACACTGAA
GACGACACCTTGCGGGACCTAGTTGAGCAGCACGGTGCCAAGGATTGGAA
TAACATTTCTTCCCAGCTCCCCCACCGCTCGGCAAAGCAGTGCTGTGAAC
GATGGCATAATTATCTGAAGCCCGATATTCGCAAGGATGCCTGGTGTGCA
CCGGAGGACCAGATCATTCTAGATTACCACCAAGCGTTTTGTAATAAGTG
GAGCAAGATCGCCGAGTTCTTGCCGGGGCGAACGGGGAATGCTGTCAAGA
ATCGATATTATTGCTTAATGCGTCGGGACCGGAAGAATACAGGCTCGGCA
GGGGCCTCGAGGGGAATGCTGAAAGGTGGGGACTGCAGAACGGTCTTACA
CCCGACGGCTCAGCAAATCCATTTGAACCAGCACCGCCCTTCATCCTTGC
CGCTGGGGATCGAGAATAACGTAGAGTGCGAGGGCACCAGCAGCCACAGC
AGCAGCCTGTCGCAAGACGACACACTGATGTTTCATCAGCTCGCCAATCT
CAAGATGCCCTTTTCACATCCCGAGGAATCAAATCAACACAACAAGCACA
ACAACAACAACAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGC
AGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGGGCATTCACACCCAT
CCTCCAGGCCAACATCTCCCCCCCGGCCACCCTCCGCCCCTGGGACTTCC
CATCATCGCAAGCACCGGGGACGCTCAAGGCAACCATTATCCGCTACTCC
AAGGCGCCCCCAACACCTCCACCTTCGGCTCTCAACAGCATCTGCAGCAT
TTACCACAAAGACAGCCGCACCACCCCCAGCACCAGCATCAGCACTACGC
CCATAGCCTCCAATGCTCTCCAACGGACGACCCAACGGAAGTCCCTCCCT
GGGGCTCTTCATGGGTACCACCAGCCACCTCTGGCCAGCAGCAGCAGCAG
CAGTTCAGCAGTAGCAACTGTGGCAGCATCGTTAGTAGCTGTGGAGGAGG
ACAAGGAGGACAAGGAGGGCTAGGATCAAGATGAATCTGATTCCGCGAGC
CCCGCCAACACCACCTCCTCCTCCACCTCTAACTCCGAAAGCGGGGGCTC
TAAAGGTTTCAAGAAACGCGCTTGGACCAACACTGAAGACGACACCTTGC
GGGACCTAGTTGAGCAGCACGGTGCCAAGGATTGGAATAACATTTCTTCC
CAGCTCCCCCACCGCTCGGCAAAGCAGTGCTGTGAACGATGGCATAATTA
TCTGAAGCCCGATATTCGCAAGGATGCCTGGTGTGCACCGGAGGACCAGA
TCATTCTAGATTACCACCAAGCGTTTTGTAATAAGTGGAGCAAGATCGCC
GAGTTCTTGCCGGGGCGAACGGGGAATGCTGTCAAGAATCGATATTATTG
CTTAATGCGTCGGGACCGGAAGAATACAGGCTCGGCAGGGGCCTCGAGGG
GAATGCTGAAAGGTGGGGACTGCAGAACGGTCTTACACCCGACGGCTCAG
CAAATCCATTTGAACCAGCACCGCCCTTCATCCTTGCCGCTGGGGATCGA
GAATAACGTAGAGTGCGAGGGCACCAGCAGCCACAGCAGCAGCCTGTCGC
AAGACGACACACTGATGTTTCATCAGCTCGCCAATCTCAAGATGCCCTTT
TCACATCCCGAGGAATCAAATCAACACAACAAGCACAACAACAACAACAG
CAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAACAGCA
ACAGCAGCAGCAGCAGCAGCAGGGCATTCACACCCATCCTCCAGGCCAAC
ATCTCCCCCCCGGCCACCCTCCGCCCCTGGGACTTCCCATCATCGCAAGC
ACCGGGGACGCTCAAGGCAACCATTATCCGCTACTCCAAGGCGCCCCCAA
CACCTCCACCTTCGGCTCTCAACAGCATCTGCAGCATTTACCACAAAGAC
AGCCGCACCACCCCCAGCACCAGCATCAGCACTACGCCCATAGCCTCCAA
TGCTCTCCAACGGACGACCCAACGGAAGTCCCTCCCTGGGGCTCTTCATG
GGTACCACCAGCCACCTCTGGCCAGCAGCAGCAGCAGCAGTTCAGCAGTA
GCAACTGTGGCAGCATCGTTAGTAGCTGTGGAGGAGGACAAGGAGGACAA
GGAGGGCTAGGATCAAGATGAATCTGATTCCGCGAGCCCCGCCAACACCA
CCTCCTCCTCCACCTCTAACTCCGAAAGCGGGGGCTCTAAAGGTTTCAAG
AAACGCGCTTGGACCAACACTGAAGACGACACCTTGCGGGACCTAGTTGA
GCAGCACGGTGCCAAGGATTGGAATAACATTTCTTCCCAGCTCCCCCACC
GCTCGGCAAAGCAGTGCTGTGAACGATGGCATAATTATCTGAAGCCCGAT
ATTCGCAAGGATGCCTGGTGTGCACCGGAGGACCAGATCATTCTAGATTA
CCACCAAGCGTTTTGTAATAAGTGGAGCAAGATCGCCGAGTTCTTGCCGG
GGCGAACGGGGAATGCTGTCAAGAATCGATATTATTGCTTAATGCGTCGG
GACCGGAAGAATACAGGCTCGGCAGGGGCCTCGAGGGGAATGCTGAAAGG
TGGGGACTGCAGAACGGTCTTACACCCGACGGCTCAGCAAATCCATTTGA
ACCAGCACCGCCCTTCATCCTTGCCGCTGGGGATCGAGAATAACGTAGAG
TGCGAGGGCACCAGCAGCCACAGCAGCAGCCTGTCGCAAGACGACACACT
GATGTTTCATCAGCTCGCCAATCTCAAGATGCCCTTTTCACATCCCGAGG
AATCAAATCAACACAACAAGCACAACAACAACAACAGCAGCAACAGCAGC
AGCAACAGCAACAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGCAGCAG
CAGCAGCAGGGCATTCACACCCATCCTCCAGGCCAACATCTCCCCCCCGG
CCACCCTCCGCCCCTGGGACTTCCCATCATCGCAAGCACCGGGGACGCTC
AAGGCAACCATTATCCGCTACTCCAAGGCGCCCCCAACACCTCCACCTTC
GGCTCTCAACAGCATCTGCAGCATTTACCACAAAGACAGCCGCACCACCC
CCAGCACCAGCATCAGCACTACGCCCATAGCCTCCAATGCTCTCCAACGG
ACGACCCAACGGAAGTCCCTCCCTGGGGCTCTTCATGGGTACCACCAGCC
ACCTCTGGCCAGCAGCAGCAGCAGCAGTTCAGCAGTAGCAACTGTGGCAG
CATCGTTAGTAGCTGTGGAGGAGGACAAGGAGGACAAGGAGGGCTAGGAT
CAAGATGAATCTGATTCCGCGAGCCCCGCCAACACCACCTCCTCCTCCAC
CTCTAACTCCGAAAGCGGGGGCTCTAAAGGTTTCAAGAAACGCGCTTGGA
CCAACACTGAAGACGACACCTTGCGGGACCTAGTTGAGCAGCACGGTGCC
AAGGATTGGAATAACATTTCTTCCCAGCTCCCCCACCGCTCGGCAAAGCA
GTGCTGTGAACGATGGCATAATTATCTGAAGCCCGATATTCGCAAGGATG
CCTGGTGTGCACCGGAGGACCAGATCATTCTAGATTACCACCAAGCGTTT
TGTAATAAGTGGAGCAAGATCGCCGAGTTCTTGCCGGGGCGAACGGGGAA
TGCTGTCAAGAATCGATATTATTGCTTAATGCGTCGGGACCGGAAGAATA
CAGGCTCGGCAGGGGCCTCGAGGGGAATGCTGAAAGGTGGGGACTGCAGA
ACGGTCTTACACCCGACGGCTCAGCAAATCCATTTGAACCAGCACCGCCC
TTCATCCTTGCCGCTGGGGATCGAGAATAACGTAGAGTGCGAGGGCACCA
GCAGCCACAGCAGCAGCCTGTCGCAAGACGACACACTGATGTTTCATCAG
CTCGCCAATCTCAAGATGCCCTTTTCACATCCCGAGGAATCAAATCAA back to top
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