jgi.p|Nanoce1779_2|596364, mRNA_6802 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596364
Unique Name	mRNA_6802
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3549
Alignment location	scaffold_17:129390..132938 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596450
Track	FilteredModels2
ProteinId	596364

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:129390..132938 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596364	gene_6802	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596364	mRNA_6802-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6802	CDS_6802	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:129390..132938+
coding sequence from alignment at scaffold_17:129390..132938+

mRNA sequence

>mRNA_6802 ID=mRNA_6802|Name=jgi.p|Nanoce1779_2|596364|organism=Nannochloropsis oceanica|type=mRNA|length=3549bp
GGATGCGAGAGGACGAGGACACCGGCCACGGAGGGCGCTGTGGGAAGCGA
AAGGGCATCAGCAGCAGCAGCGGCGGCGGCGGCAGCGCCACTGATACCAC
TACTATCACCATTCCACGCAAGCGCAAAGATGGTTCGTCGCCCTTGCGCA
AGTCGTCCTGGGAGGCCTTGGCGGGCGCGGTACCTAAAACTTCATTTGCC
CGAAAGGACGCTGAGCAGATGGTATCGCAGGAAGTTACTCGGTTCAAGCT
CAACGAGAGTCAGGAGAAGGCGCTACGCATGGCCCTGAGTCGAAAACTTT
CTCTTATTCAGGGCCCCCCTGGCACGGGCAAGACGAGGACTGCGTGCCAT
CTTGTCAATATTGCTGTCAAGCTGGGTCAGCGTCGGGATTCAGGCAAGGT
CTTGGCTGTGGCTTTCAGTAACGTTGCGGCCGATAATCTTCTAGAAGGCT
GCTTGCGCTTGGGATTGAAAGCTGTGCGCGTTGGTCGTGCAGCAACCGTA
CGTCCCGAGCTGCGGAACCACACTTTGGACGCGTTGCTGATGCAGCATGA
GAGCGTCAACACTTTCAAAAAAATGCTGGAAGCTTCCCGCGGATCGACCT
CCCGGGAGGTCCAAGCGGCTAAAAGGGATTTGGAGGACGCGGAGCTCATG
GCCGCCGTTTCAATATTGGGAAATGCCGATGTCGTCGTTTCTACATGTGT
GGGCGCTGCCAACGAGGTCATTATCAATGCTGCCAGTGTCACCGGCAGAA
TCGGTGGAGGAGGGACAGGGTCAGGTAGCAATAAGGGAGACTGGGATGAT
TTTTCCTCGCCTTTCTCAATGTCCTCCTCCTCGTTCTCCAGCCCATTGCG
CGCCATCAAATTTCCTACAGTCATAATCGACGAGGCGTCCCAAGCTACGG
AACCCGCCACCCTGATTCCCCTCACGCAAGGCTGCGAGCAACTTGTCCTT
GTCGGCGACCACTACCAACTCCCCCCCACCATTAAATCCATGCGCGCCGC
ACAACAGGGCCTAGGGGTCTCCCTCTTCACCCGCCTTGCCATGGCCGGCA
TCCAACCCTCTCTCCTCACCCTTCAATATCGCATGCATCCCTTCATCGCC
CAATTTCCCTCCCAGCGTTTCTACGGCGGTCTCCTTCAATCCCATCCTGC
GAATATTTACAAGCGACCACGGCCCGAGGGTTTCCCGTGGCCTCATCCTT
CCTTGCCCGTCGCGTTCGTCGCAGTCGGTGGCGATGAAGATGACACTCCC
TCTGCGCCTTTTTACGAACAGCGTACAAATGGAAATCAGACTTCGTATTT
GAATCGAAAGGAGGCTGATGTGTTGATGGAGGTTCTGGGTGGCGTCTTGC
GCGGGGGCCAAGTGCAGAGCACGGACGTGGGCATTGTCACCCCCTACTCT
GCTCAAGTGAAACATGTGACTGAGTTAGCCCAACATCGCCTGCGTAATTT
TAAGCCGACTGAGCTGGAGATTCAGAGTGTGGATGCCTATCAGGGGAGAG
AGAAGGAATTGATTTTGATGTCGGCCGTGCGGAGCAATGGTAAAGGCAAG
GTGGGGTTTCTGGGGGACTGGCGGCGGTTGAATGTGGCAATTACAAGGGC
TAAGAGAGGTTTGATCGTGCTAGGGGACCCGAGAACATTAAGGCACGACC
CACACTGGGGTGCATACCTGAAGTGGGCGCAGAAGCATGGTTGTGTCATG
ACGCTGGGCGAGTTGAGGAAGCGGTTCGAGTAGGGTTGGGAGGGAAGAGA
AGGAAATTGCTTCATTCGAATCTCTACTTTCGGGGTCATGACTGTGAATA
GAAGTAGGTGTAGTTCCTCTCACATGATGAGTTTGATACCATAGAAATAA
AGTGGGAGAAGACGGATAAAGAGAAGTTGTAGATGGGTTGATTGATGGAG
CTTTGCACTAATACGGATACAGTGGGAAAAGAGAGGTGTCAAACTTGTAA
ACATTACCTCGGGCTTCAGAATCGAAAGAGAAGGGGTGGCGGGCAGAGGG
CTGCTGCTGATGCCTCTGCTTTTGTTTGGTAGGCATTGAACAATACAAAG
TGAGAGCCTCCTTTCGTGAGCAAGGTCATTATATATCTTCAAACAAAGCG
TGGGTGAAAGGAATGAGAGTTCGTGTACATGAGTATCGCGAAGTCATATG
TCGTTGTCGAACAAAACACAGTGCAAAGGGCTTGTTGGAATGGAGAGAAA
GAGGCAGAGACGTGGGCGGTGAAAGGAAAGGGATGAGAGATATTCAAGAG
GCACTTTTGGGGATCCATCTTGTAAAGTTATGTTACAGTAGTTGGGGAAG
CACGTGTATTAATCGGGTTTGAATTTGTGACTAAATTTGAAAGAAAATTA
AGAATGAAGGATTCAAAGAAAGCGATAACGAAGAGTGTCTCCATAAACGA
AGAAGACTACCCCAGCAAGATTTGACCTTTTTTTCGCGTTTTCCCGGCCC
ACGTAGCATTTCTTTCTTTCATCTGGAGAACAAATTGTGGAAGAAGACCG
GTTCTACAAATTTGCTAGGATGACTTGGTGGCGTCAGTCCATAGGCGTTG
TGCATCTGACCCTGGAGTGCTGGAGCAGGGGAACCAGGGGAATGGTAATA
GTAGAGGGTTGATAACACGACGACGATGAAGGGGAGTAAGAGGAGCAGCC
AACCAGGACAACCAAGGGTACGGTCGAGAGCACCTGACTCAGCAAGTCTT
ACCCATTTGACAGTCAAATTACCACATGGGTGCGCAAGACTGTCACGAAA
TGCAACTTGGCCAGGGACATGGTAGTGGTCAATGACGGGGCCGAGGCTGG
GGGCGTGGGATCCACCGGCGTGGTACGCCCGTTATCGGGCTGCTTGGACT
TTGGGGCCGTTCCCCATGATGAAAGACTGTCGGCGTGTAAGATATGGACG
TGGCTGAGGGCAGGGCCTAAGACGGCTTGACCATCAAGGGGAGGTCAACT
TCGAGGCAGAGCGAGCGCGTATTGGACATTGTCCTGGCTACATATTGAAA
CTCAATAACAACAACGCGGGGCCCACCTCTACGCAGAAAAGCGCGTTGCA
GTCACAGGGAGCAAGATGCTCAGCCAGATCCACCCGCAGGAACCCATCGA
ATCTATGGCGGAGCTCATCGCATGTCTCGAAAGCAATTGAAGACCGTCTA
TCCCATCGTCTTGCACGCAGTTAACCGGAAATATGTGATCATCAGCGTGC
AGCTCTAAAGGCGAAGTATTTCTTCTCAAGCTTCCGCATCTCTACAAATT
GAATAGGAGGTTTATCGGCTCAGCCAAGCAGCTGCAGACAAGGATTGAAT
GCTCGAGGCTGAGACTCGAACCTCCTCAGGGCCCGAAGTCGACTTCTCCC
GTATGGGTGGCGTCCAGGTCCTCCTCATCAATTGTGCCGTCGCCCATAAA
TCAGGCCACCTTGTCCCCATAGAAATAAAAATCCTACCTTAAATTGTCCA
CCCTCACATCCTTGACAGCAAATGTGCGCAACAACAACGCGTCGACGCAT
GGCGATGGCAACCTCCTCCTCTGGAGGGATGTTTAACGTGCCATGGCGT

protein sequence of jgi.p|Nanoce1779_2|596364

>mRNA_6802-protein ID=mRNA_6802-protein|Name=jgi.p|Nanoce1779_2|596364|organism=Nannochloropsis oceanica|type=polypeptide|length=577bp
MREDEDTGHGGRCGKRKGISSSSGGGGSATDTTTITIPRKRKDGSSPLRK
SSWEALAGAVPKTSFARKDAEQMVSQEVTRFKLNESQEKALRMALSRKLS
LIQGPPGTGKTRTACHLVNIAVKLGQRRDSGKVLAVAFSNVAADNLLEGC
LRLGLKAVRVGRAATVRPELRNHTLDALLMQHESVNTFKKMLEASRGSTS
REVQAAKRDLEDAELMAAVSILGNADVVVSTCVGAANEVIINAASVTGRI
GGGGTGSGSNKGDWDDFSSPFSMSSSSFSSPLRAIKFPTVIIDEASQATE
PATLIPLTQGCEQLVLVGDHYQLPPTIKSMRAAQQGLGVSLFTRLAMAGI
QPSLLTLQYRMHPFIAQFPSQRFYGGLLQSHPANIYKRPRPEGFPWPHPS
LPVAFVAVGGDEDDTPSAPFYEQRTNGNQTSYLNRKEADVLMEVLGGVLR
GGQVQSTDVGIVTPYSAQVKHVTELAQHRLRNFKPTELEIQSVDAYQGRE
KELILMSAVRSNGKGKVGFLGDWRRLNVAITRAKRGLIVLGDPRTLRHDP
HWGAYLKWAQKHGCVMTLGELRKRFE*

mRNA from alignment at scaffold_17:129390..132938+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6802 ID=mRNA_6802|Name=jgi.p|Nanoce1779_2|596364|organism=Nannochloropsis oceanica|type=mRNA|length=3549bp|location=Sequence derived from alignment at scaffold_17:129390..132938+ (Nannochloropsis oceanica)
GGATGCGAGAGGACGAGGACACCGGCCACGGAGGGCGCTGTGGGAAGCGA
AAGGGCATCAGCAGCAGCAGCGGCGGCGGCGGCAGCGCCACTGATACCAC
TACTATCACCATTCCACGCAAGCGCAAAGATGGTTCGTCGCCCTTGCGCA
AGTCGTCCTGGGAGGCCTTGGCGGGCGCGGTACCTAAAACTTCATTTGCC
CGAAAGGACGCTGAGCAGATGGTATCGCAGGAAGTTACTCGGTTCAAGCT
CAACGAGAGTCAGGAGAAGGCGCTACGCATGGCCCTGAGTCGAAAACTTT
CTCTTATTCAGGGCCCCCCTGGCACGGGCAAGACGAGGACTGCGTGCCAT
CTTGTCAATATTGCTGTCAAGCTGGGTCAGCGTCGGGATTCAGGCAAGGT
CTTGGCTGTGGCTTTCAGTAACGTTGCGGCCGATAATCTTCTAGAAGGCT
GCTTGCGCTTGGGATTGAAAGCTGTGCGCGTTGGTCGTGCAGCAACCGTA
CGTCCCGAGCTGCGGAACCACACTTTGGACGCGTTGCTGATGCAGCATGA
GAGCGTCAACACTTTCAAAAAAATGCTGGAAGCTTCCCGCGGATCGACCT
CCCGGGAGGTCCAAGCGGCTAAAAGGGATTTGGAGGACGCGGAGCTCATG
GCCGCCGTTTCAATATTGGGAAATGCCGATGTCGTCGTTTCTACATGTGT
GGGCGCTGCCAACGAGGTCATTATCAATGCTGCCAGTGTCACCGGCAGAA
TCGGTGGAGGAGGGACAGGGTCAGGTAGCAATAAGGGAGACTGGGATGAT
TTTTCCTCGCCTTTCTCAATGTCCTCCTCCTCGTTCTCCAGCCCATTGCG
CGCCATCAAATTTCCTACAGTCATAATCGACGAGGCGTCCCAAGCTACGG
AACCCGCCACCCTGATTCCCCTCACGCAAGGCTGCGAGCAACTTGTCCTT
GTCGGCGACCACTACCAACTCCCCCCCACCATTAAATCCATGCGCGCCGC
ACAACAGGGCCTAGGGGTCTCCCTCTTCACCCGCCTTGCCATGGCCGGCA
TCCAACCCTCTCTCCTCACCCTTCAATATCGCATGCATCCCTTCATCGCC
CAATTTCCCTCCCAGCGTTTCTACGGCGGTCTCCTTCAATCCCATCCTGC
GAATATTTACAAGCGACCACGGCCCGAGGGTTTCCCGTGGCCTCATCCTT
CCTTGCCCGTCGCGTTCGTCGCAGTCGGTGGCGATGAAGATGACACTCCC
TCTGCGCCTTTTTACGAACAGCGTACAAATGGAAATCAGACTTCGTATTT
GAATCGAAAGGAGGCTGATGTGTTGATGGAGGTTCTGGGTGGCGTCTTGC
GCGGGGGCCAAGTGCAGAGCACGGACGTGGGCATTGTCACCCCCTACTCT
GCTCAAGTGAAACATGTGACTGAGTTAGCCCAACATCGCCTGCGTAATTT
TAAGCCGACTGAGCTGGAGATTCAGAGTGTGGATGCCTATCAGGGGAGAG
AGAAGGAATTGATTTTGATGTCGGCCGTGCGGAGCAATGGTAAAGGCAAG
GTGGGGTTTCTGGGGGACTGGCGGCGGTTGAATGTGGCAATTACAAGGGC
TAAGAGAGGTTTGATCGTGCTAGGGGACCCGAGAACATTAAGGCACGACC
CACACTGGGGTGCATACCTGAAGTGGGCGCAGAAGCATGGTTGTGTCATG
ACGCTGGGCGAGTTGAGGAAGCGGTTCGAGTAGGGTTGGGAGGGAAGAGA
AGGAAATTGCTTCATTCGAATCTCTACTTTCGGGGTCATGACTGTGAATA
GAAGTAGGTGTAGTTCCTCTCACATGATGAGTTTGATACCATAGAAATAA
AGTGGGAGAAGACGGATAAAGAGAAGTTGTAGATGGGTTGATTGATGGAG
CTTTGCACTAATACGGATACAGTGGGAAAAGAGAGGTGTCAAACTTGTAA
ACATTACCTCGGGCTTCAGAATCGAAAGAGAAGGGGTGGCGGGCAGAGGG
CTGCTGCTGATGCCTCTGCTTTTGTTTGGTAGGCATTGAACAATACAAAG
TGAGAGCCTCCTTTCGTGAGCAAGGTCATTATATATCTTCAAACAAAGCG
TGGGTGAAAGGAATGAGAGTTCGTGTACATGAGTATCGCGAAGTCATATG
TCGTTGTCGAACAAAACACAGTGCAAAGGGCTTGTTGGAATGGAGAGAAA
GAGGCAGAGACGTGGGCGGTGAAAGGAAAGGGATGAGAGATATTCAAGAG
GCACTTTTGGGGATCCATCTTGTAAAGTTATGTTACAGTAGTTGGGGAAG
CACGTGTATTAATCGGGTTTGAATTTGTGACTAAATTTGAAAGAAAATTA
AGAATGAAGGATTCAAAGAAAGCGATAACGAAGAGTGTCTCCATAAACGA
AGAAGACTACCCCAGCAAGATTTGACCTTTTTTTCGCGTTTTCCCGGCCC
ACGTAGCATTTCTTTCTTTCATCTGGAGAACAAATTGTGGAAGAAGACCG
GTTCTACAAATTTGCTAGGATGACTTGGTGGCGTCAGTCCATAGGCGTTG
TGCATCTGACCCTGGAGTGCTGGAGCAGGGGAACCAGGGGAATGGTAATA
GTAGAGGGTTGATAACACGACGACGATGAAGGGGAGTAAGAGGAGCAGCC
AACCAGGACAACCAAGGGTACGGTCGAGAGCACCTGACTCAGCAAGTCTT
ACCCATTTGACAGTCAAATTACCACATGGGTGCGCAAGACTGTCACGAAA
TGCAACTTGGCCAGGGACATGGTAGTGGTCAATGACGGGGCCGAGGCTGG
GGGCGTGGGATCCACCGGCGTGGTACGCCCGTTATCGGGCTGCTTGGACT
TTGGGGCCGTTCCCCATGATGAAAGACTGTCGGCGTGTAAGATATGGACG
TGGCTGAGGGCAGGGCCTAAGACGGCTTGACCATCAAGGGGAGGTCAACT
TCGAGGCAGAGCGAGCGCGTATTGGACATTGTCCTGGCTACATATTGAAA
CTCAATAACAACAACGCGGGGCCCACCTCTACGCAGAAAAGCGCGTTGCA
GTCACAGGGAGCAAGATGCTCAGCCAGATCCACCCGCAGGAACCCATCGA
ATCTATGGCGGAGCTCATCGCATGTCTCGAAAGCAATTGAAGACCGTCTA
TCCCATCGTCTTGCACGCAGTTAACCGGAAATATGTGATCATCAGCGTGC
AGCTCTAAAGGCGAAGTATTTCTTCTCAAGCTTCCGCATCTCTACAAATT
GAATAGGAGGTTTATCGGCTCAGCCAAGCAGCTGCAGACAAGGATTGAAT
GCTCGAGGCTGAGACTCGAACCTCCTCAGGGCCCGAAGTCGACTTCTCCC
GTATGGGTGGCGTCCAGGTCCTCCTCATCAATTGTGCCGTCGCCCATAAA
TCAGGCCACCTTGTCCCCATAGAAATAAAAATCCTACCTTAAATTGTCCA
CCCTCACATCCTTGACAGCAAATGTGCGCAACAACAACGCGTCGACGCAT
GGCGATGGCAACCTCCTCCTCTGGAGGGATGTTTAACGTGCCATGGCGT

Coding sequence (CDS) from alignment at scaffold_17:129390..132938+

>mRNA_6802 ID=mRNA_6802|Name=jgi.p|Nanoce1779_2|596364|organism=Nannochloropsis oceanica|type=CDS|length=1731bp|location=Sequence derived from alignment at scaffold_17:129390..132938+ (Nannochloropsis oceanica)
ATGCGAGAGGACGAGGACACCGGCCACGGAGGGCGCTGTGGGAAGCGAAA
GGGCATCAGCAGCAGCAGCGGCGGCGGCGGCAGCGCCACTGATACCACTA
CTATCACCATTCCACGCAAGCGCAAAGATGGTTCGTCGCCCTTGCGCAAG
TCGTCCTGGGAGGCCTTGGCGGGCGCGGTACCTAAAACTTCATTTGCCCG
AAAGGACGCTGAGCAGATGGTATCGCAGGAAGTTACTCGGTTCAAGCTCA
ACGAGAGTCAGGAGAAGGCGCTACGCATGGCCCTGAGTCGAAAACTTTCT
CTTATTCAGGGCCCCCCTGGCACGGGCAAGACGAGGACTGCGTGCCATCT
TGTCAATATTGCTGTCAAGCTGGGTCAGCGTCGGGATTCAGGCAAGGTCT
TGGCTGTGGCTTTCAGTAACGTTGCGGCCGATAATCTTCTAGAAGGCTGC
TTGCGCTTGGGATTGAAAGCTGTGCGCGTTGGTCGTGCAGCAACCGTACG
TCCCGAGCTGCGGAACCACACTTTGGACGCGTTGCTGATGCAGCATGAGA
GCGTCAACACTTTCAAAAAAATGCTGGAAGCTTCCCGCGGATCGACCTCC
CGGGAGGTCCAAGCGGCTAAAAGGGATTTGGAGGACGCGGAGCTCATGGC
CGCCGTTTCAATATTGGGAAATGCCGATGTCGTCGTTTCTACATGTGTGG
GCGCTGCCAACGAGGTCATTATCAATGCTGCCAGTGTCACCGGCAGAATC
GGTGGAGGAGGGACAGGGTCAGGTAGCAATAAGGGAGACTGGGATGATTT
TTCCTCGCCTTTCTCAATGTCCTCCTCCTCGTTCTCCAGCCCATTGCGCG
CCATCAAATTTCCTACAGTCATAATCGACGAGGCGTCCCAAGCTACGGAA
CCCGCCACCCTGATTCCCCTCACGCAAGGCTGCGAGCAACTTGTCCTTGT
CGGCGACCACTACCAACTCCCCCCCACCATTAAATCCATGCGCGCCGCAC
AACAGGGCCTAGGGGTCTCCCTCTTCACCCGCCTTGCCATGGCCGGCATC
CAACCCTCTCTCCTCACCCTTCAATATCGCATGCATCCCTTCATCGCCCA
ATTTCCCTCCCAGCGTTTCTACGGCGGTCTCCTTCAATCCCATCCTGCGA
ATATTTACAAGCGACCACGGCCCGAGGGTTTCCCGTGGCCTCATCCTTCC
TTGCCCGTCGCGTTCGTCGCAGTCGGTGGCGATGAAGATGACACTCCCTC
TGCGCCTTTTTACGAACAGCGTACAAATGGAAATCAGACTTCGTATTTGA
ATCGAAAGGAGGCTGATGTGTTGATGGAGGTTCTGGGTGGCGTCTTGCGC
GGGGGCCAAGTGCAGAGCACGGACGTGGGCATTGTCACCCCCTACTCTGC
TCAAGTGAAACATGTGACTGAGTTAGCCCAACATCGCCTGCGTAATTTTA
AGCCGACTGAGCTGGAGATTCAGAGTGTGGATGCCTATCAGGGGAGAGAG
AAGGAATTGATTTTGATGTCGGCCGTGCGGAGCAATGGTAAAGGCAAGGT
GGGGTTTCTGGGGGACTGGCGGCGGTTGAATGTGGCAATTACAAGGGCTA
AGAGAGGTTTGATCGTGCTAGGGGACCCGAGAACATTAAGGCACGACCCA
CACTGGGGTGCATACCTGAAGTGGGCGCAGAAGCATGGTTGTGTCATGAC
GCTGGGCGAGTTGAGGAAGCGGTTCGAGTAG

Synonyms

Publications