Properties
| Property Name | Value |
|---|
| TranscriptId | 596440 |
| Track | FilteredModels2 |
| ProteinId | 596354 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:124253..127149 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6800 ID=mRNA_6800|Name=jgi.p|Nanoce1779_2|596354|organism=Nannochloropsis oceanica|type=mRNA|length=1613bp
AGCCAAAGAAAATCGTGCGTGTTGTGGATGCCCTCGAGCTGCAAGACATA
CCTTCTCCTCCTCGCCTCTCTCTCCGCCATCGTAGTCTTTGCCTCGTCGT
CACCCTCCAGCGCAACACCACCTGTATCGTCGTCGTCTTTTGCAGCCACG
ACATACAAAACTACAGACACATCAAACATCACTCCCATCGAAGATATGGC
AGACAAGCACAGTAGTGATAGTGGCAAGGGTACTGGCGCTGCCTTTTCCG
CGAAAGACCTAGGTTTCAAAGTGCCTGGGACTGGAAGCGGCCCGACAGAC
GAGCGGATTTTCAATCAACCACCAAGGAGCTGGCCTGAGCTTGTCGGCGT
GGACGCAGAGGAAGCCAAGGCCCGCATCAATAGCGATATGCCGGGCTTGA
ATGTGATAGTTCTTCCCAAGCATAGCCCAGTTACGATGGACTATCGCCTT
GAACGAGTGCGGATCTTTGTGGAAGAGGACAACAAGGTTGCCATGACGCC
TGCCCAAGGCTAAGTGAGAGGGAAGCGCAGATAGGCAATGTAAGACATCT
GCCAACGAATGCAAGAGAGGGATAAAGGTGTGGAGAGCGAGGGATGAATG
TGGAGATATCGGAATGGTAATTTGGGTCACAGAGAGGGATGTAAAACACA
GAGAACACGAGCGGTGAAAAGAGAGACTTGGAGAGAAAAGTCAAGGACAA
ATCATTTGAAAGTATGCCTCGATAAGGCCAGGATAAAAAGCAAAGAAACA
AGACAAGATAGATGTGAATGATCAACGACAACGTGAGAAAATTAAGAAAA
AAAGTCGCCAATGGGGATGGCGTGTGCGAATGAGTAGTACACTCCACGCT
CTCCGCATGGTCTCGCCCGATGTTTGATTCAGGATGGATCGCTAGCACGT
ATATTGTGCATGTGCGGCGAGAAAGACTTCAAGGCCGCCGGCCTTTTCTG
GGAGACTGCTCATGTGGCTCTCTGTGCGTCCCTGGTGGAACCCGTGGTCC
CGACTTGGACACGCTCGATGCCCCAATGCCCGCGCCTGTGGGTTCGACGT
TTCGCAAGCTTTCCATGTCCCACCCCCCCCGTGCCGCGCCTCAGTACCGA
TCAGAATGTAATACTGGGAAAAACGAATGACAAAAGAAAACGTCATATCA
GGGCCATCCGCCATAAATTTATTGCCGTGAACATTTGTTAACATTTGTCA
AATACTCTTCCCCACCTTTCACCTTGAACCCCTGTGCTTTCAACTACTCT
TCATCAGGTGCAAATGCCCAAGGCACCAACTTCAAATATGGAGCCTCATC
CGCCACTTGGTTCATCTTCCAATCATTCCTAAAAAGAAGCACTGGCCTCC
CCCATCGATCTTTACATTTCATCGCCCCAAAAATCAACCCCTCCTCGTCA
GCCTTATCAATCTCCTCCCACGTCGCTTCCGACCACCGAGCCGCCGTGAA
CGTCAATGGCTCTAGTCGTGTCTCCACCCCATATTCCTCCTTCATTCGAT
ACGACACCACCTCGAGCTGCAATGGCCCCACAGCTGCCAAGATAGGAGAC
GATTTTCCTTCATCATTTCGCTCATAAAGCAACTGCACGGCACCCTCTTC
CAACAATTCATCA back to topprotein sequence of jgi.p|Nanoce1779_2|596354 >mRNA_6800-protein ID=mRNA_6800-protein|Name=jgi.p|Nanoce1779_2|596354|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MPSSCKTYLLLLASLSAIVVFASSSPSSATPPVSSSSFAATTYKTTDTSN
ITPIEDMADKHSSDSGKGTGAAFSAKDLGFKVPGTGSGPTDERIFNQPPR
SWPELVGVDAEEAKARINSDMPGLNVIVLPKHSPVTMDYRLERVRIFVEE
DNKVAMTPAQG* back to topmRNA from alignment at scaffold_17:124253..127149- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6800 ID=mRNA_6800|Name=jgi.p|Nanoce1779_2|596354|organism=Nannochloropsis oceanica|type=mRNA|length=2897bp|location=Sequence derived from alignment at scaffold_17:124253..127149- (Nannochloropsis oceanica)
AGCCAAAGAAAATCGTGCGTGTTGTGGATGCCCTCGAGCTGCAAGACATA
CCTTCTCCTCCTCGCCTCTCTCTCCGCCATCGTAGTCTTTGCCTCGTCGT
CACCCTCCAGCGCAACACCACCTGTATCGTCGTCGTCTTTTGCAGCCACG
ACATGTAAGAATGTGGGATGGGTGGGCGGGTTGAGCAGGGGGCGGCGTTC
TAGTGAGAACAAGATAAGCGCAAGAGGATGGGCGGAGGAACGCGTTCCTT
GAGGTGTCCCGTGCACTTGATTGCATACAAAGCAGATAGACTGGGCAGCT
TGTGTCAGGCTCGTCAGCCACATCCACCATCGTCCCGCGTGTGCAGGAGC
GCAGATGCGTGCCCGGGGGGCCTATTGAATGCCACGTGCTTCCTCAGTCG
CGTCTCATCAACTCTCGCCTCGCCCCTCACAGACAAAACTACAGACACAT
CAAACATCACTCCCATCGAAGATATGGCAGACAAGCACAGTAGTGATAGT
GGCAAGGGTACTGGCGCTGCCTTTTCCGCGAAAGACCTAGGTTTCAAAGT
GCCTGGGACTGGAAGCGGCCCGACAGACGAGCGGATTTTCAATCAACCAC
CAAGGAGCTGGCCTGAGCTTGTCGGTAAGGGTTCGAACAAAATATATATG
ACTTTGGTCTGTATATTAAAGCTGCGCGTGGGATCATTTTATCCATTCCT
CAATGGTTACCGACTCGAATTTGTCGCGCAATTGTGAGCGCAGGAAGATA
AAGGGAATTGAGAGGGGCGGAAAGAGATGTTGCTGTTGGTGGTGATAACA
AATAAGCCTGACTTTCGAATTGTCATTGCGAAAGAGACTTCAATGACAGA
AAAAAATGTCATAAAACAACAGGCCCACTAGAGTGGTATGAAAAACTGGA
AGAGAGCCTGATAGATGAGGAAGAGTGAGAAATGGTGGCTCCATCTCAGA
GGGAGGGCAAAAAGCCTAATGGACGCATCATATATTTCCACCCCTCTACA
AGAACTTGCATATAACTGTATTCTTTCTCTCTATTCTTGACAGGCGTGGA
CGCAGAGGAAGCCAAGGCCCGCATCAATAGCGATATGCCGGGCTTGAATG
TGATAGTTCTTCCCAAGGTATGTGATGAAGTAAGAGATAAAGCGAGTCAA
ATTCGGATCATTAAAATCTCTCCTGTCAACTCTTGCAGAGAAATGTTGAG
TCTCTTTACATGTGTGTAGGCATTGATTATGTTGGCCCGCCTTTTTTGGG
GCCAGTCTTTCTCTGGTGTACAAGTTTCAGTGTGAGATTATTTTCTGCAT
CGCTACAATACTGGTCTGTATTGCGATTATGGCTTGACCAATTTGCAGAC
AGTATGTCAGAAATCGTATGACTTGCTCAATAGCATTCAAAGCGCACTCA
CATTCTTCCCCTTGCTCTCTCCCTCTACACATCCATCTACCCAACCAAAT
ACTATGAATACGTCCCTTTCTCTCCATTTCAATCTTACACCCTCAAGAAT
GCTCCCACCACCCGTGATTTCCGATTGGACCGAGTCCGTGTTTTCATTGA
AGGAGACAATACGGTAGCCCGTGCCCCCGCACAAGGCTAAGGGTACGCAC
GCACCACCACAAATCAAATAATGCACCCCACATTCGTTTTAAAATAGTGT
GGGGGGGAAATGAATCAAAGAAATGGCATTTATAAACGTATCCCAAATTC
ACAGCATAGCCCAGTTACGATGGACTATCGCCTTGAACGAGTGCGGATCT
TTGTGGAAGAGGACAACAAGGTTGCCATGACGCCTGCCCAAGGCTAAGTG
AGAGGGAAGCGCAGATAGGCAATGTAAGACATCTGCCAACGAATGCAAGA
GAGGGATAAAGGTGTGGAGAGCGAGGGATGAATGTGGAGATATCGGAATG
GTAATTTGGGTCACAGAGAGGGATGTAAAACACAGAGAACACGAGCGGTG
AAAAGAGAGACTTGGAGAGAAAAGTCAAGGACAAATCATTTGAAAGTATG
CCTCGATAAGGCCAGGATAAAAAGCAAAGAAACAAGACAAGATAGATGTG
AATGATCAACGACAACGTGAGAAAATTAAGAAAAAAAGTCGCCAATGGGG
ATGGCGTGTGCGAATGAGTAGTACACTCCACGCTCTCCGCATGGTCTCGC
CCGATGTTTGATTCAGGATGGATCGCTAGCACGTATATTGTGCATGTGCG
GCGAGAAAGACTTCAAGGCCGCCGGCCTTTTCTGGGAGACTGCTCATGTG
GCTCTCTGTGCGTCCCTGGTGGAACCCGTGGTCCCGACTTGGACACGCTC
GATGCCCCAATGCCCGCGCCTGTGGGTTCGACGTTTCGCAAGCTTTCCAT
GTCCCACCCCCCCCGTGCCGCGCCTCAGTACCGATCAGAATGTAATACTG
GGAAAAACGAATGACAAAAGAAAACGTCATATCAGGGCCATCCGCCATAA
ATTTATTGCCGTGAACATTTGTTAACATTTGTCAAATACTCTTCCCCACC
TTTCACCTTGAACCCCTGTGCTTTCAACTACTCTTCATCAGGTGCAAATG
CCCAAGGCACCAACTTCAAATATGGAGCCTCATCCGCCACTTGGTTCATC
TTCCAATCATTCCTAAAAAGAAGCACTGGCCTCCCCCATCGATCTTTACA
TTTCATCGCCCCAAAAATCAACCCCTCCTCGTCAGCCTTATCAATCTCCT
CCCACGTCGCTTCCGACCACCGAGCCGCCGTGAACGTCAATGGCTCTAGT
CGTGTCTCCACCCCATATTCCTCCTTCATTCGATACGACACCACCTCGAG
CTGCAATGGCCCCACAGCTGCCAAGATAGGAGACGATTTTCCTTCATCAT
TTCGCTCATAAAGCAACTGCACGGCACCCTCTTCCAACAATTCATCA back to topCoding sequence (CDS) from alignment at scaffold_17:124253..127149- >mRNA_6800 ID=mRNA_6800|Name=jgi.p|Nanoce1779_2|596354|organism=Nannochloropsis oceanica|type=CDS|length=1944bp|location=Sequence derived from alignment at scaffold_17:124253..127149- (Nannochloropsis oceanica)
CATAGCCCAGTTACGATGGACTATCGCCTTGAACGAGTGCGGATCTTTGT
GGAAGAGGACAACAAGGTTGCCATGACGCCTGCCCAAGGCTAAGCGTGGA
CGCAGAGGAAGCCAAGGCCCGCATCAATAGCGATATGCCGGGCTTGAATG
TGATAGTTCTTCCCAAGACAAAACTACAGACACATCAAACATCACTCCCA
TCGAAGATATGGCAGACAAGCACAGTAGTGATAGTGGCAAGGGTACTGGC
GCTGCCTTTTCCGCGAAAGACCTAGGTTTCAAAGTGCCTGGGACTGGAAG
CGGCCCGACAGACGAGCGGATTTTCAATCAACCACCAAGGAGCTGGCCTG
AGCTTGTCGATGCCCTCGAGCTGCAAGACATACCTTCTCCTCCTCGCCTC
TCTCTCCGCCATCGTAGTCTTTGCCTCGTCGTCACCCTCCAGCGCAACAC
CACCTGTATCGTCGTCGTCTTTTGCAGCCACGACATCATAGCCCAGTTAC
GATGGACTATCGCCTTGAACGAGTGCGGATCTTTGTGGAAGAGGACAACA
AGGTTGCCATGACGCCTGCCCAAGGCTAAGCGTGGACGCAGAGGAAGCCA
AGGCCCGCATCAATAGCGATATGCCGGGCTTGAATGTGATAGTTCTTCCC
AAGACAAAACTACAGACACATCAAACATCACTCCCATCGAAGATATGGCA
GACAAGCACAGTAGTGATAGTGGCAAGGGTACTGGCGCTGCCTTTTCCGC
GAAAGACCTAGGTTTCAAAGTGCCTGGGACTGGAAGCGGCCCGACAGACG
AGCGGATTTTCAATCAACCACCAAGGAGCTGGCCTGAGCTTGTCGATGCC
CTCGAGCTGCAAGACATACCTTCTCCTCCTCGCCTCTCTCTCCGCCATCG
TAGTCTTTGCCTCGTCGTCACCCTCCAGCGCAACACCACCTGTATCGTCG
TCGTCTTTTGCAGCCACGACATCATAGCCCAGTTACGATGGACTATCGCC
TTGAACGAGTGCGGATCTTTGTGGAAGAGGACAACAAGGTTGCCATGACG
CCTGCCCAAGGCTAAGCGTGGACGCAGAGGAAGCCAAGGCCCGCATCAAT
AGCGATATGCCGGGCTTGAATGTGATAGTTCTTCCCAAGACAAAACTACA
GACACATCAAACATCACTCCCATCGAAGATATGGCAGACAAGCACAGTAG
TGATAGTGGCAAGGGTACTGGCGCTGCCTTTTCCGCGAAAGACCTAGGTT
TCAAAGTGCCTGGGACTGGAAGCGGCCCGACAGACGAGCGGATTTTCAAT
CAACCACCAAGGAGCTGGCCTGAGCTTGTCGATGCCCTCGAGCTGCAAGA
CATACCTTCTCCTCCTCGCCTCTCTCTCCGCCATCGTAGTCTTTGCCTCG
TCGTCACCCTCCAGCGCAACACCACCTGTATCGTCGTCGTCTTTTGCAGC
CACGACATCATAGCCCAGTTACGATGGACTATCGCCTTGAACGAGTGCGG
ATCTTTGTGGAAGAGGACAACAAGGTTGCCATGACGCCTGCCCAAGGCTA
AGCGTGGACGCAGAGGAAGCCAAGGCCCGCATCAATAGCGATATGCCGGG
CTTGAATGTGATAGTTCTTCCCAAGACAAAACTACAGACACATCAAACAT
CACTCCCATCGAAGATATGGCAGACAAGCACAGTAGTGATAGTGGCAAGG
GTACTGGCGCTGCCTTTTCCGCGAAAGACCTAGGTTTCAAAGTGCCTGGG
ACTGGAAGCGGCCCGACAGACGAGCGGATTTTCAATCAACCACCAAGGAG
CTGGCCTGAGCTTGTCGATGCCCTCGAGCTGCAAGACATACCTTCTCCTC
CTCGCCTCTCTCTCCGCCATCGTAGTCTTTGCCTCGTCGTCACCCTCCAG
CGCAACACCACCTGTATCGTCGTCGTCTTTTGCAGCCACGACAT back to top
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