jgi.p|Nanoce1779_2|667702, mRNA_680 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|667702
Unique Name	mRNA_680
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2559
Alignment location	scaffold_2:173863..176421 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	667788
Track	FilteredModels2
ProteinId	667702

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:173863..176421 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667702	gene_680	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667702	mRNA_680-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_680	CDS_680	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:173863..176421+
coding sequence from alignment at scaffold_2:173863..176421+

mRNA sequence

>mRNA_680 ID=mRNA_680|Name=jgi.p|Nanoce1779_2|667702|organism=Nannochloropsis oceanica|type=mRNA|length=2559bp
CGCTGTGGTCATTGGACAAGCGTCGTCGACCACCATCCCATCTCGTGCGA
GAAGTCGACGTGTCTCTCAAGCTGCTGATCGGTGCAGATAATTGAATATT
GAATGGCCGCATGTTCTCTCCTCTCCCTCCCCTACGACTATAATAGTAAG
TTCATACCATCTCTCATGTACACATTTACACGCACACAGGACACATACAC
ACGCACGCAGGAGTGAAGTCTTGACGACGGCCACTTTGCTGGCTCGCAGC
AGTACCAGGCGTATTCTTTGTTCCGGCCGACATCGTCTCGCGCTATCAGC
AGCACAGAGTGGGAGACCCTTTCTCCAAAAAGGATTAGAATCGAAGCCAT
GTTCAGACGCAGTAGCAACCGCATTAGCGGACCAGAGTCTCCCGCCGCAG
CAACAGGCGCAGCTTTTATAGGCGCAAATGATATGCCCGACGACAAGTCC
ACAATTACGGTCCTGATCTGCGGGGCAGGGCCCGTTGGTCTAGCTGCTGC
CATTGAATGCCTGCGCCATGGCTTGCGCGTCCGTATTATCGACAAGGAGC
TCACGAGGGATCCGCACAGCAAGGCGTTTGGAATTCATGCGTTGTCTATG
GAAAAATTTCTCGCGATGGGCATCGCGCCCGCGGTTTTGGAGCAAGCAAA
TTGCGTCGGTCGTGTTGATATCTTGGGACGTTTAACCACTGTTGTGGAAG
ACTTTTCCTACATCCCTTCTCGATTCAAGGGAACATTTATGCTGTCGCAG
CGTAAGCTCGAAGACATTATGGAAGCCAAATTGCGGTCATATGGTGCAGA
GGTGGAGCGCGGTGTGGAGCTGTTGGACTTGATTCAGCCAGAGGTGCAGG
GTGAAAAGGACGGCGAGACGGCCCAAGAAGCAAGCCTGGTGTCCTCGTCC
AGCGGCAACAGCCATACAGTTGCCAGTGTTCGCGATGTAAAAACGGGTCA
AGATAGAAGAATAACCTCTAAATACGTCATTGGATCTGACGGTAGTCACA
GCCGTGTCCGTAAGCTTCTCCAAATACCCTTCAACGGAGCGCCTTACGAG
GAAGATTTCTTGTTGCTCGACACCCACTTTACACTCAAACCTGGCATGAG
TTTTGGGGGCATAAAAGTATTGCTAGGCGAGCCTTTTGTCGCCATCTTTC
AACTTGCGCCGGACATTTTGCGGGTCGTGACTAGGCGCTGTGACGGGGAC
GGCATCCCGCACGGCAGCAACGATAAGAGCATCAAGGGTGTGGAGAACGC
CGACGTGGAAGCCGCCATAGCACATCGAATGAAGGCGTTGGTGTTGGCAC
GATGCCCAGAGCTAGCTTCTCTTCACACAGTGACGTGGGCGAGCATCTTT
CGAGTGCACCGCCGAGTGGTACCGAGGTACAGCGTGGGGAATGTGTTTCT
GGCTGGAGATGCGGCGCATATTCACTCGCCGTTTGGAGGACAGGGACTGA
ATACAGGGGTTCATGACGCGGTTAATCTGGCGTGGAAGTTGGGGGTGGTA
GAGAGGCTTGGGGGAAATGCTTCGGTGTTTTTGCCTTCTTATCACGACGA
GAGGCATCCGGTGGGGGAGGAAACGTTGGCCTGGACGGATAATTTGACTA
CCTTTACCGCGGTTGGAGGCTTAATGGGCAACTTGGTGCAGAATGTGTTG
TTTCCTTTGGCGAGTCCATTATTGAATTGCTCGCCGTGGTTGACGGAGAA
GATCACGACGAGGATGAGCATGTTGAGTTTAACGTATCGAGGGACCTCGT
CCGCCCTCCTGTCCTCGTCCTCGGGGTCTTTCACGGTAGGAAGCCCTCAG
CCGGGGGATAGGGCGAGGGATGGTCCGTTGATTTCGTTGTCGTCGGGGGC
GGCCACGGGATTGTTGGAGGTTATGTCCGGGGGGTTACGACATACTCTTC
TTCTTTTTGGGGAGGAGTCAGGGGGAGAGAAAGGAGTCGAGGGGGCTGTC
AGGGCTTTGTTGGGAAATAAGGGGGAGGAGAGATTGTGGCGATTGAGAGA
TGTGGTGGCGCTTGTGCATATTTCTCGGCGATTTCACAGTGTGCCGAAAA
CTGCTGTTGCTCTAGGTACAGGTAGTAGCATTGGCAGTAGCAGCGTCAGC
AACAGCAACGGCAACAGCAGCAGTAGGAAGGAACTTGTGATCACGCCCAT
GTACGACGAGATCGGCCGAGTCACTCAGGCCTTTGGTATCGAGGTTTCGA
CGGGGAGGAAGGGCAATCCGGCGCCCCTCCCTCCCTGCCTCTTCCTGATC
CGTCCTGATGGCTACGTCGGATGGAGGGCCATGGGATGGGATTTGGACGG
TTTGCTGCATTATCTGGAGATGCTTTTCCTGATCGCCGGTCGTAACAGCA
GCGGCACTGGTAGTAGAAGTGATATAAGTAACCGTTAAGTCGGGGTAGAA
TCCAAAAATCTTGAAATGGAGCGCCCAAAGGGAGAATAAATCAAGAAAAC
AATAAGTCAGGATTGACTCAATACACAAATTCTAAAGTAACGTGTATATG
CGTCTTCTTAAATCGCTTCGCATGGAACCGAAAGGAAATACAAGATTCAA
AAAGCTGGC

protein sequence of jgi.p|Nanoce1779_2|667702

>mRNA_680-protein ID=mRNA_680-protein|Name=jgi.p|Nanoce1779_2|667702|organism=Nannochloropsis oceanica|type=polypeptide|length=680bp
MFRRSSNRISGPESPAAATGAAFIGANDMPDDKSTITVLICGAGPVGLAA
AIECLRHGLRVRIIDKELTRDPHSKAFGIHALSMEKFLAMGIAPAVLEQA
NCVGRVDILGRLTTVVEDFSYIPSRFKGTFMLSQRKLEDIMEAKLRSYGA
EVERGVELLDLIQPEVQGEKDGETAQEASLVSSSSGNSHTVASVRDVKTG
QDRRITSKYVIGSDGSHSRVRKLLQIPFNGAPYEEDFLLLDTHFTLKPGM
SFGGIKVLLGEPFVAIFQLAPDILRVVTRRCDGDGIPHGSNDKSIKGVEN
ADVEAAIAHRMKALVLARCPELASLHTVTWASIFRVHRRVVPRYSVGNVF
LAGDAAHIHSPFGGQGLNTGVHDAVNLAWKLGVVERLGGNASVFLPSYHD
ERHPVGEETLAWTDNLTTFTAVGGLMGNLVQNVLFPLASPLLNCSPWLTE
KITTRMSMLSLTYRGTSSALLSSSSGSFTVGSPQPGDRARDGPLISLSSG
AATGLLEVMSGGLRHTLLLFGEESGGEKGVEGAVRALLGNKGEERLWRLR
DVVALVHISRRFHSVPKTAVALGTGSSIGSSSVSNSNGNSSSRKELVITP
MYDEIGRVTQAFGIEVSTGRKGNPAPLPPCLFLIRPDGYVGWRAMGWDLD
GLLHYLEMLFLIAGRNSSGTGSRSDISNR*

mRNA from alignment at scaffold_2:173863..176421+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_680 ID=mRNA_680|Name=jgi.p|Nanoce1779_2|667702|organism=Nannochloropsis oceanica|type=mRNA|length=2559bp|location=Sequence derived from alignment at scaffold_2:173863..176421+ (Nannochloropsis oceanica)
CGCTGTGGTCATTGGACAAGCGTCGTCGACCACCATCCCATCTCGTGCGA
GAAGTCGACGTGTCTCTCAAGCTGCTGATCGGTGCAGATAATTGAATATT
GAATGGCCGCATGTTCTCTCCTCTCCCTCCCCTACGACTATAATAGTAAG
TTCATACCATCTCTCATGTACACATTTACACGCACACAGGACACATACAC
ACGCACGCAGGAGTGAAGTCTTGACGACGGCCACTTTGCTGGCTCGCAGC
AGTACCAGGCGTATTCTTTGTTCCGGCCGACATCGTCTCGCGCTATCAGC
AGCACAGAGTGGGAGACCCTTTCTCCAAAAAGGATTAGAATCGAAGCCAT
GTTCAGACGCAGTAGCAACCGCATTAGCGGACCAGAGTCTCCCGCCGCAG
CAACAGGCGCAGCTTTTATAGGCGCAAATGATATGCCCGACGACAAGTCC
ACAATTACGGTCCTGATCTGCGGGGCAGGGCCCGTTGGTCTAGCTGCTGC
CATTGAATGCCTGCGCCATGGCTTGCGCGTCCGTATTATCGACAAGGAGC
TCACGAGGGATCCGCACAGCAAGGCGTTTGGAATTCATGCGTTGTCTATG
GAAAAATTTCTCGCGATGGGCATCGCGCCCGCGGTTTTGGAGCAAGCAAA
TTGCGTCGGTCGTGTTGATATCTTGGGACGTTTAACCACTGTTGTGGAAG
ACTTTTCCTACATCCCTTCTCGATTCAAGGGAACATTTATGCTGTCGCAG
CGTAAGCTCGAAGACATTATGGAAGCCAAATTGCGGTCATATGGTGCAGA
GGTGGAGCGCGGTGTGGAGCTGTTGGACTTGATTCAGCCAGAGGTGCAGG
GTGAAAAGGACGGCGAGACGGCCCAAGAAGCAAGCCTGGTGTCCTCGTCC
AGCGGCAACAGCCATACAGTTGCCAGTGTTCGCGATGTAAAAACGGGTCA
AGATAGAAGAATAACCTCTAAATACGTCATTGGATCTGACGGTAGTCACA
GCCGTGTCCGTAAGCTTCTCCAAATACCCTTCAACGGAGCGCCTTACGAG
GAAGATTTCTTGTTGCTCGACACCCACTTTACACTCAAACCTGGCATGAG
TTTTGGGGGCATAAAAGTATTGCTAGGCGAGCCTTTTGTCGCCATCTTTC
AACTTGCGCCGGACATTTTGCGGGTCGTGACTAGGCGCTGTGACGGGGAC
GGCATCCCGCACGGCAGCAACGATAAGAGCATCAAGGGTGTGGAGAACGC
CGACGTGGAAGCCGCCATAGCACATCGAATGAAGGCGTTGGTGTTGGCAC
GATGCCCAGAGCTAGCTTCTCTTCACACAGTGACGTGGGCGAGCATCTTT
CGAGTGCACCGCCGAGTGGTACCGAGGTACAGCGTGGGGAATGTGTTTCT
GGCTGGAGATGCGGCGCATATTCACTCGCCGTTTGGAGGACAGGGACTGA
ATACAGGGGTTCATGACGCGGTTAATCTGGCGTGGAAGTTGGGGGTGGTA
GAGAGGCTTGGGGGAAATGCTTCGGTGTTTTTGCCTTCTTATCACGACGA
GAGGCATCCGGTGGGGGAGGAAACGTTGGCCTGGACGGATAATTTGACTA
CCTTTACCGCGGTTGGAGGCTTAATGGGCAACTTGGTGCAGAATGTGTTG
TTTCCTTTGGCGAGTCCATTATTGAATTGCTCGCCGTGGTTGACGGAGAA
GATCACGACGAGGATGAGCATGTTGAGTTTAACGTATCGAGGGACCTCGT
CCGCCCTCCTGTCCTCGTCCTCGGGGTCTTTCACGGTAGGAAGCCCTCAG
CCGGGGGATAGGGCGAGGGATGGTCCGTTGATTTCGTTGTCGTCGGGGGC
GGCCACGGGATTGTTGGAGGTTATGTCCGGGGGGTTACGACATACTCTTC
TTCTTTTTGGGGAGGAGTCAGGGGGAGAGAAAGGAGTCGAGGGGGCTGTC
AGGGCTTTGTTGGGAAATAAGGGGGAGGAGAGATTGTGGCGATTGAGAGA
TGTGGTGGCGCTTGTGCATATTTCTCGGCGATTTCACAGTGTGCCGAAAA
CTGCTGTTGCTCTAGGTACAGGTAGTAGCATTGGCAGTAGCAGCGTCAGC
AACAGCAACGGCAACAGCAGCAGTAGGAAGGAACTTGTGATCACGCCCAT
GTACGACGAGATCGGCCGAGTCACTCAGGCCTTTGGTATCGAGGTTTCGA
CGGGGAGGAAGGGCAATCCGGCGCCCCTCCCTCCCTGCCTCTTCCTGATC
CGTCCTGATGGCTACGTCGGATGGAGGGCCATGGGATGGGATTTGGACGG
TTTGCTGCATTATCTGGAGATGCTTTTCCTGATCGCCGGTCGTAACAGCA
GCGGCACTGGTAGTAGAAGTGATATAAGTAACCGTTAAGTCGGGGTAGAA
TCCAAAAATCTTGAAATGGAGCGCCCAAAGGGAGAATAAATCAAGAAAAC
AATAAGTCAGGATTGACTCAATACACAAATTCTAAAGTAACGTGTATATG
CGTCTTCTTAAATCGCTTCGCATGGAACCGAAAGGAAATACAAGATTCAA
AAAGCTGGC

Coding sequence (CDS) from alignment at scaffold_2:173863..176421+

>mRNA_680 ID=mRNA_680|Name=jgi.p|Nanoce1779_2|667702|organism=Nannochloropsis oceanica|type=CDS|length=2040bp|location=Sequence derived from alignment at scaffold_2:173863..176421+ (Nannochloropsis oceanica)
ATGTTCAGACGCAGTAGCAACCGCATTAGCGGACCAGAGTCTCCCGCCGC
AGCAACAGGCGCAGCTTTTATAGGCGCAAATGATATGCCCGACGACAAGT
CCACAATTACGGTCCTGATCTGCGGGGCAGGGCCCGTTGGTCTAGCTGCT
GCCATTGAATGCCTGCGCCATGGCTTGCGCGTCCGTATTATCGACAAGGA
GCTCACGAGGGATCCGCACAGCAAGGCGTTTGGAATTCATGCGTTGTCTA
TGGAAAAATTTCTCGCGATGGGCATCGCGCCCGCGGTTTTGGAGCAAGCA
AATTGCGTCGGTCGTGTTGATATCTTGGGACGTTTAACCACTGTTGTGGA
AGACTTTTCCTACATCCCTTCTCGATTCAAGGGAACATTTATGCTGTCGC
AGCGTAAGCTCGAAGACATTATGGAAGCCAAATTGCGGTCATATGGTGCA
GAGGTGGAGCGCGGTGTGGAGCTGTTGGACTTGATTCAGCCAGAGGTGCA
GGGTGAAAAGGACGGCGAGACGGCCCAAGAAGCAAGCCTGGTGTCCTCGT
CCAGCGGCAACAGCCATACAGTTGCCAGTGTTCGCGATGTAAAAACGGGT
CAAGATAGAAGAATAACCTCTAAATACGTCATTGGATCTGACGGTAGTCA
CAGCCGTGTCCGTAAGCTTCTCCAAATACCCTTCAACGGAGCGCCTTACG
AGGAAGATTTCTTGTTGCTCGACACCCACTTTACACTCAAACCTGGCATG
AGTTTTGGGGGCATAAAAGTATTGCTAGGCGAGCCTTTTGTCGCCATCTT
TCAACTTGCGCCGGACATTTTGCGGGTCGTGACTAGGCGCTGTGACGGGG
ACGGCATCCCGCACGGCAGCAACGATAAGAGCATCAAGGGTGTGGAGAAC
GCCGACGTGGAAGCCGCCATAGCACATCGAATGAAGGCGTTGGTGTTGGC
ACGATGCCCAGAGCTAGCTTCTCTTCACACAGTGACGTGGGCGAGCATCT
TTCGAGTGCACCGCCGAGTGGTACCGAGGTACAGCGTGGGGAATGTGTTT
CTGGCTGGAGATGCGGCGCATATTCACTCGCCGTTTGGAGGACAGGGACT
GAATACAGGGGTTCATGACGCGGTTAATCTGGCGTGGAAGTTGGGGGTGG
TAGAGAGGCTTGGGGGAAATGCTTCGGTGTTTTTGCCTTCTTATCACGAC
GAGAGGCATCCGGTGGGGGAGGAAACGTTGGCCTGGACGGATAATTTGAC
TACCTTTACCGCGGTTGGAGGCTTAATGGGCAACTTGGTGCAGAATGTGT
TGTTTCCTTTGGCGAGTCCATTATTGAATTGCTCGCCGTGGTTGACGGAG
AAGATCACGACGAGGATGAGCATGTTGAGTTTAACGTATCGAGGGACCTC
GTCCGCCCTCCTGTCCTCGTCCTCGGGGTCTTTCACGGTAGGAAGCCCTC
AGCCGGGGGATAGGGCGAGGGATGGTCCGTTGATTTCGTTGTCGTCGGGG
GCGGCCACGGGATTGTTGGAGGTTATGTCCGGGGGGTTACGACATACTCT
TCTTCTTTTTGGGGAGGAGTCAGGGGGAGAGAAAGGAGTCGAGGGGGCTG
TCAGGGCTTTGTTGGGAAATAAGGGGGAGGAGAGATTGTGGCGATTGAGA
GATGTGGTGGCGCTTGTGCATATTTCTCGGCGATTTCACAGTGTGCCGAA
AACTGCTGTTGCTCTAGGTACAGGTAGTAGCATTGGCAGTAGCAGCGTCA
GCAACAGCAACGGCAACAGCAGCAGTAGGAAGGAACTTGTGATCACGCCC
ATGTACGACGAGATCGGCCGAGTCACTCAGGCCTTTGGTATCGAGGTTTC
GACGGGGAGGAAGGGCAATCCGGCGCCCCTCCCTCCCTGCCTCTTCCTGA
TCCGTCCTGATGGCTACGTCGGATGGAGGGCCATGGGATGGGATTTGGAC
GGTTTGCTGCATTATCTGGAGATGCTTTTCCTGATCGCCGGTCGTAACAG
CAGCGGCACTGGTAGTAGAAGTGATATAAGTAACCGTTAA

Synonyms

Publications