jgi.p|Nanoce1779_2|576099, mRNA_68 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576099
Unique NamemRNA_68
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length779
Alignment locationscaffold_3:185651..187167 +

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Properties
Property NameValue
TranscriptId576185
TrackFilteredModels2
ProteinId576099
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:185651..187167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576099gene_68Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576099mRNA_68-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_68CDS_68Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_68 ID=mRNA_68|Name=jgi.p|Nanoce1779_2|576099|organism=Nannochloropsis oceanica|type=mRNA|length=779bp
ACAGGCACCTTTTCCAAGGTCGACGAGGAGGCAGACGAAAGGGGTCGCCA
TCGCTAACAATAGGGGCATCAGCAGCAGGAGGAGCAGCAGCAGCCGGAGA
AGCAGAAGCAGCAGCATTGCGTCCCGTAGCACCAAGGACGTACACAGCCG
TTGCAGGACCACAGACCGCATTTTTTTTTCACCTTTTAATACCTTTTAAC
AGTCATAACCATGTCAGACTACGCGACGGAGCTCCTCAGACGGCAGCTGC
ACGAGCTGAACAAGAACCCTCCTGAAGGCGTTTCAGTGGGCCTGGTCGAT
GACAGCCTTTTTGAATGGGAGCTGCTTCTCGTCGGACCGGCAGACACGCT
GTACGAAGGAGGCTTTTTCAAGGCCCGCTTGGCCTTTCCGACAGACTTCC
CCAACATGCCTCCGACCATGACCTTCCAGACGGAGATGTGGCACCCCAAT
GTCTACGAGGACGGCCGCGTCTGCATCTCCATCCTTCATCCTCCCGGGGA
AGATCGCTTCAACGACCAAGAAACAGCAGATGAGCGATGGCGGCCCATTC
TGGGGGTGGAAGCCATCATCGTGTCTGTGATTAGCATGCTCTCTGACCCT
AATGACGAGAGCCCCGCGAATATCGACGCAGCGGTTCAGTTTAGAAACGA
CCGAGCAGGGTTCAAAAAACGTGTGCGCGCCGTCGTCCGCAAGTCGCAGG
AGGAGCTATAGGGAGGGAGGGAGGAAGGGAGGAAGGGAAGGGAGGCAAGG
CGCTGGGTTTGTACTTAGTTTTCAAGGAG
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protein sequence of jgi.p|Nanoce1779_2|576099

>mRNA_68-protein ID=mRNA_68-protein|Name=jgi.p|Nanoce1779_2|576099|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MSDYATELLRRQLHELNKNPPEGVSVGLVDDSLFEWELLLVGPADTLYEG
GFFKARLAFPTDFPNMPPTMTFQTEMWHPNVYEDGRVCISILHPPGEDRF
NDQETADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQFRNDRAG
FKKRVRAVVRKSQEEL*
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mRNA from alignment at scaffold_3:185651..187167+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_68 ID=mRNA_68|Name=jgi.p|Nanoce1779_2|576099|organism=Nannochloropsis oceanica|type=mRNA|length=1517bp|location=Sequence derived from alignment at scaffold_3:185651..187167+ (Nannochloropsis oceanica)
ACAGGCACCTTTTCCAAGGTCGACGAGGAGGCAGACGAAAGGGGTCGCCA
TCGCTAACAATAGGGGCATCAGCAGCAGGAGGAGCAGCAGCAGCCGGAGA
AGCAGAAGCAGCAGCATTGCGTCCCGTAGCACCAAGGACGTACACAGCCG
TTGCAGGACCACAGACCGCATTTTTTTTTCACCTTTTAATACCTTTTAAC
AGTCATAACCATGTCAGACTACGCGACGGAGCTCCTCAGACGGCAGCTGC
ACGGTACGTGGGTCTTACTTGAGGCGGAAGGAAGGGCTTTCAAGTGGGTG
TCAACTTTCCTCCCTAATCTTCTTTCTTTACCGCCCTTTCTCTTGAATAC
GCTCAGCTTCCACGTTTCCTGCTTGTTGAGGAAATCGCGGCAGTAATACG
TCCTCGGAAATACTACTTCTCTTTTACTCAGCACCTTTTAACCTCCCTCC
CTCCCCACGTCCCTCTCCCGGCACAGAGCTGAACAAGAACCCTCCTGAAG
GCGTTTCAGTGGGCCTGGTCGATGACAGCCTTTTTGAATGGGAGCTGCTT
CTCGTCGGACCGGCAGACACGCTGTACGAAGGTACTGGTGTCTTTACATG
TATAAATATCTTTCGTTTTGGGTCTGCTATTCCCCTCTGGTCCTCACTCT
CTCTCTTTCCCTCTCTCCCCTCCCTTCGTGCCTTCCATGCAGGAGGCTTT
TTCAAGGCCCGCTTGGCCTTTCCGACAGACTTCCCCAACATGCCTCCGAC
CATGACCTTCCAGACGGAGATGTGGCACCCCAATGGTGAGGAGGGCGGGA
GGGAAAGAGGGAGGGCGGGAGAGATATTCATGGAAGGATGGAAGGAAAGA
GGAAGAAGGTAAAGTGTGCAAGCAATGTGTTTCTCGTGCCGTATGTTCAT
GAAGGACACATGCGGACTTTTTCCTGAAGCAAAAGCATGCATAGCGCAAT
AACTAACTTCCCCCCTCCTGCCCTTCTTTCCTCCCTTCCCTCCCTCCTTC
CCTCCCTCCGTCCCTCCCTCCTATGCCTTCTTCCTTTCAGTCTACGAGGA
CGGCCGCGTCTGCATCTCCATCCTTCATCCTCCCGGGGAAGATCGCTTCA
ACGACCAAGAAACAGCAGATGAGCGATGGCGGCCCATTCTGGGGGTGGAA
GCCATCATCGTGTCTGTGATTAGCATGCTCTCTGACCCTAATGACGAGAG
CCCCGCGAATATCGACGCAGCGGTACGTCCATGCCGTCCCTCCTTCCCTC
CCTCCCTCCCTCCCTCCCTCCTTCCTTCCCGACCTTGCATGGCCAACGAT
ATAAAGAGCGACCGGGAGCCCACCTTCCCTTCCTCTCTCCTTCCCTCCCT
CCCTCTTTCTTTACCTTGCAGGTTCAGTTTAGAAACGACCGAGCAGGGTT
CAAAAAACGTGTGCGCGCCGTCGTCCGCAAGTCGCAGGAGGAGCTATAGG
GAGGGAGGGAGGAAGGGAGGAAGGGAAGGGAGGCAAGGCGCTGGGTTTGT
ACTTAGTTTTCAAGGAG
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Coding sequence (CDS) from alignment at scaffold_3:185651..187167+

>mRNA_68 ID=mRNA_68|Name=jgi.p|Nanoce1779_2|576099|organism=Nannochloropsis oceanica|type=CDS|length=2505bp|location=Sequence derived from alignment at scaffold_3:185651..187167+ (Nannochloropsis oceanica)
ATGTCAGACTACGCGACGGAGCTCCTCAGACGGCAGCTGCACGAGCTGAA
CAAGAACCCTCCTGAAGGCGTTTCAGTGGGCCTGGTCGATGACAGCCTTT
TTGAATGGGAGCTGCTTCTCGTCGGACCGGCAGACACGCTGTACGAAGGA
GGCTTTTTCAAGGCCCGCTTGGCCTTTCCGACAGACTTCCCCAACATGCC
TCCGACCATGACCTTCCAGACGGAGATGTGGCACCCCAATGTCTACGAGG
ACGGCCGCGTCTGCATCTCCATCCTTCATCCTCCCGGGGAAGATCGCTTC
AACGACCAAGAAACAGCAGATGAGCGATGGCGGCCCATTCTGGGGGTGGA
AGCCATCATCGTGTCTGTGATTAGCATGCTCTCTGACCCTAATGACGAGA
GCCCCGCGAATATCGACGCAGCGGTTCAGTTTAGAAACGACCGAGCAGGG
TTCAAAAAACGTGTGCGCGCCGTCGTCCGCAAGTCGCAGGAGGAGCTATA
GATGTCAGACTACGCGACGGAGCTCCTCAGACGGCAGCTGCACGAGCTGA
ACAAGAACCCTCCTGAAGGCGTTTCAGTGGGCCTGGTCGATGACAGCCTT
TTTGAATGGGAGCTGCTTCTCGTCGGACCGGCAGACACGCTGTACGAAGG
AGGCTTTTTCAAGGCCCGCTTGGCCTTTCCGACAGACTTCCCCAACATGC
CTCCGACCATGACCTTCCAGACGGAGATGTGGCACCCCAATGTCTACGAG
GACGGCCGCGTCTGCATCTCCATCCTTCATCCTCCCGGGGAAGATCGCTT
CAACGACCAAGAAACAGCAGATGAGCGATGGCGGCCCATTCTGGGGGTGG
AAGCCATCATCGTGTCTGTGATTAGCATGCTCTCTGACCCTAATGACGAG
AGCCCCGCGAATATCGACGCAGCGGTTCAGTTTAGAAACGACCGAGCAGG
GTTCAAAAAACGTGTGCGCGCCGTCGTCCGCAAGTCGCAGGAGGAGCTAT
AGATGTCAGACTACGCGACGGAGCTCCTCAGACGGCAGCTGCACGAGCTG
AACAAGAACCCTCCTGAAGGCGTTTCAGTGGGCCTGGTCGATGACAGCCT
TTTTGAATGGGAGCTGCTTCTCGTCGGACCGGCAGACACGCTGTACGAAG
GAGGCTTTTTCAAGGCCCGCTTGGCCTTTCCGACAGACTTCCCCAACATG
CCTCCGACCATGACCTTCCAGACGGAGATGTGGCACCCCAATGTCTACGA
GGACGGCCGCGTCTGCATCTCCATCCTTCATCCTCCCGGGGAAGATCGCT
TCAACGACCAAGAAACAGCAGATGAGCGATGGCGGCCCATTCTGGGGGTG
GAAGCCATCATCGTGTCTGTGATTAGCATGCTCTCTGACCCTAATGACGA
GAGCCCCGCGAATATCGACGCAGCGGTTCAGTTTAGAAACGACCGAGCAG
GGTTCAAAAAACGTGTGCGCGCCGTCGTCCGCAAGTCGCAGGAGGAGCTA
TAGATGTCAGACTACGCGACGGAGCTCCTCAGACGGCAGCTGCACGAGCT
GAACAAGAACCCTCCTGAAGGCGTTTCAGTGGGCCTGGTCGATGACAGCC
TTTTTGAATGGGAGCTGCTTCTCGTCGGACCGGCAGACACGCTGTACGAA
GGAGGCTTTTTCAAGGCCCGCTTGGCCTTTCCGACAGACTTCCCCAACAT
GCCTCCGACCATGACCTTCCAGACGGAGATGTGGCACCCCAATGTCTACG
AGGACGGCCGCGTCTGCATCTCCATCCTTCATCCTCCCGGGGAAGATCGC
TTCAACGACCAAGAAACAGCAGATGAGCGATGGCGGCCCATTCTGGGGGT
GGAAGCCATCATCGTGTCTGTGATTAGCATGCTCTCTGACCCTAATGACG
AGAGCCCCGCGAATATCGACGCAGCGGTTCAGTTTAGAAACGACCGAGCA
GGGTTCAAAAAACGTGTGCGCGCCGTCGTCCGCAAGTCGCAGGAGGAGCT
ATAGATGTCAGACTACGCGACGGAGCTCCTCAGACGGCAGCTGCACGAGC
TGAACAAGAACCCTCCTGAAGGCGTTTCAGTGGGCCTGGTCGATGACAGC
CTTTTTGAATGGGAGCTGCTTCTCGTCGGACCGGCAGACACGCTGTACGA
AGGAGGCTTTTTCAAGGCCCGCTTGGCCTTTCCGACAGACTTCCCCAACA
TGCCTCCGACCATGACCTTCCAGACGGAGATGTGGCACCCCAATGTCTAC
GAGGACGGCCGCGTCTGCATCTCCATCCTTCATCCTCCCGGGGAAGATCG
CTTCAACGACCAAGAAACAGCAGATGAGCGATGGCGGCCCATTCTGGGGG
TGGAAGCCATCATCGTGTCTGTGATTAGCATGCTCTCTGACCCTAATGAC
GAGAGCCCCGCGAATATCGACGCAGCGGTTCAGTTTAGAAACGACCGAGC
AGGGTTCAAAAAACGTGTGCGCGCCGTCGTCCGCAAGTCGCAGGAGGAGC
TATAG
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Synonyms
Publications