jgi.p|Nanoce1779_2|596342, mRNA_6796 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596342
Unique Name	mRNA_6796
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1272
Alignment location	scaffold_17:115990..117740 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596428
Track	FilteredModels2
ProteinId	596342

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:115990..117740 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596342	gene_6796	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596342	mRNA_6796-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6796	CDS_6796	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:115990..117740+
coding sequence from alignment at scaffold_17:115990..117740+

mRNA sequence

>mRNA_6796 ID=mRNA_6796|Name=jgi.p|Nanoce1779_2|596342|organism=Nannochloropsis oceanica|type=mRNA|length=1272bp
AACAGGAGGCCGTCTCATTTCGGACAACGCCGTTATGAAGCTCAATATTG
CCAACCCTTCAACGGGCCAGCAACACGTGGTAGAGATTGACGATGAGAAG
CGTCTGCGCGCGTTCTATGACCGACGCATCTCCCAAGAGGTGGATGGCGT
GCACATCGGAGACGAGTTTAAGGGCTACATCTTCCGAATTTCCGGTGGCA
ACGACAAGCAAGGTTTTCCCATGAAGCAGGGCGTGCTTACGGATCAGCGT
GTCCGCCTCCTCCTCCGTAAGGGTCTCTCCTGCTATCGCGCGCGCCGAAA
GGGCGAGCGTAAGCGCAAGTCCGTGCGTGGTGCCATCGTGGGGCCCGACC
TTTCGGTCCTGAACCTAGTAGTGGTGAAGCGAGGGGAGGAGCACGTGGCC
GGCTTGACCGACAGCCAGGTGCCGCGTCGTCTGGGCCCAAAGCGCGCTAA
TAAGATACGCAAGCTCTTCAACTTGTCTAAGGAGGATGATGTGACCAAGT
TCGCAATCTCCCGCACATTCGAGAACAAGAAGGGCAAGACCGTTACTAAG
CGGCCCAGCATCCAGCGACTTGTCACGCCCCTCACCCTGCAGCGCAAGCG
ACAGCGTTTGGCAGCTAAGAAGGCAGCGACTGCCAAGGCTAAGACAGAGG
CAGCTGAATACCATCGTATCTTCCAGCAGCGCCTCAACGAGCGTAAGGAG
TCTCGTCGTTCTGCCGTTTCCAAGCGTCGGTCCTCTAGACGTGCCTCGGC
CAAGGCCGAGTAAGACTCAGACTTGACTTGCGATGTGGTGCTGACTTGAA
AGAAAGAAGGATAGACTTTTGGGTAGGGTGTTACGCGTCATCGATCACGG
GGTTTTGATTTTGGTCGGGAATAGAACTGGGACACGCGCTTGATCAGAAA
TAGAGAAGAGACGCTGGGCATCAACATTGCAGGACATCAACAGCAAGAGA
AGAGTGAGGTGGGAGGGCCAATCGGGAACGAAGAGGCGCTGGTTGTTAGT
GATGGCTTTTTCGTTTTCTCAAGGTCGGAAGGAACATGATGGGGTGCGAG
AGTGGCTTGGCGTGCTCAACTGGAGCCCTGGGGGTACTAAAGGCTATACG
AGACGACAAAATCCAGACTAGTACACCATTTACAACAGCGGCAGCTGCAG
TAGCAACAACAACAACGACGACAACAACAAGCAGAACAACAAAAAGAAGA
AGATGAAGAACAAGAACAAGAACAAGAACAACAACAACAACAACATCAAC
ATCAACAACACAATGAAGTTGG

protein sequence of jgi.p|Nanoce1779_2|596342

>mRNA_6796-protein ID=mRNA_6796-protein|Name=jgi.p|Nanoce1779_2|596342|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MKLNIANPSTGQQHVVEIDDEKRLRAFYDRRISQEVDGVHIGDEFKGYIF
RISGGNDKQGFPMKQGVLTDQRVRLLLRKGLSCYRARRKGERKRKSVRGA
IVGPDLSVLNLVVVKRGEEHVAGLTDSQVPRRLGPKRANKIRKLFNLSKE
DDVTKFAISRTFENKKGKTVTKRPSIQRLVTPLTLQRKRQRLAAKKAATA
KAKTEAAEYHRIFQQRLNERKESRRSAVSKRRSSRRASAKAE*

mRNA from alignment at scaffold_17:115990..117740+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6796 ID=mRNA_6796|Name=jgi.p|Nanoce1779_2|596342|organism=Nannochloropsis oceanica|type=mRNA|length=1751bp|location=Sequence derived from alignment at scaffold_17:115990..117740+ (Nannochloropsis oceanica)
AACAGGAGGCCGTCTCATTTCGGACAACGCCGTTATGAAGGTAAGCATGC
GTCTTGTGTGCGTCTGCAATATCTCCTCCATTTCTTCCCTCTCATGGGTA
GAGGTATGACCACTCACTCACTTGCTGCCCTCCCTCCCTATCCTTTCCTC
GTCCACAGCTCAATATTGCCAACCCTTCAACGGGCCAGCAACACGTGGTA
GAGATTGACGATGAGAAGCGTCTGCGCGCGTTCTATGACCGACGCATCTC
CCAAGAGGTGGATGGCGTGCACATCGGAGACGAGTTTAAGGGCTACATCT
TCCGAATTTCCGGTGGCAACGACAAGCAAGGTTTTCCCATGAAGCAGGGC
GTGCTTACGGATCAGCGTGTCCGCCTCCTCCTCCGTAAGGGTCTCTCCTG
CTATCGCGCGCGCCGAAAGGGCGAGCGTAAGCGCAAGTCCGTGCGTGGTG
CCATCGTGGGGCCCGACCTTTCGGTCCTGAACCTAGTAGTGGTGAAGCGA
GGGGAGGAGCACGTGGCCGGCTTGACCGACAGCCAGGTGCCGCGTCGTCT
GGGCCCAAAGCGCGCTAATAAGATACGCAAGCTCTTCAACTTGTCTAAGG
AGGATGATGTGACCAAGTTCGCAATCTCCCGCACATTCGAGAACAAGAAG
GGCAAGACCGTTACTAAGCGGCCCAGCATCCAGCGACTTGTCACGCCCCT
CACCCTGCAGGTTCGCGACTGGGATGGAGAAAGAGAAGAACAAGGAGGAG
GAAGAGAGGGAGGAGGGTTGAAAAGATGATAAAACACCATGTCACAGACC
TGTTCTGAAAACCTGGGGGGCGGAGGGGGGACTCAAGGAAGGAGGGACGT
GGAAGGAAGAGGGGTTGAATAAATCTCTCTTCTTTCAACCCTCCTTTGCC
TCCTTCGTCTGCTTCCCGCTACGTGTGTGACACAACATGCACCACTATCT
GATCAACACTGTGCATCCGCATTCAACACATATGCATCGCGCTCTGATCG
AATGAATGATCCCTGCTGTTACTCACTCGTTTTCCCTTTTTCCGCCCTTC
GCCCCACTCAAACACTGACAGCGCAAGCGACAGCGTTTGGCAGCTAAGAA
GGCAGCGACTGCCAAGGCTAAGACAGAGGCAGCTGAATACCATCGTATCT
TCCAGCAGCGCCTCAACGAGCGTAAGGAGTCTCGTCGTTCTGCCGTTTCC
AAGCGTCGGTCCTCTAGACGTGCCTCGGCCAAGGCCGAGTAAGACTCAGA
CTTGACTTGCGATGTGGTGCTGACTTGAAAGAAAGAAGGATAGACTTTTG
GGTAGGGTGTTACGCGTCATCGATCACGGGGTTTTGATTTTGGTCGGGAA
TAGAACTGGGACACGCGCTTGATCAGAAATAGAGAAGAGACGCTGGGCAT
CAACATTGCAGGACATCAACAGCAAGAGAAGAGTGAGGTGGGAGGGCCAA
TCGGGAACGAAGAGGCGCTGGTTGTTAGTGATGGCTTTTTCGTTTTCTCA
AGGTCGGAAGGAACATGATGGGGTGCGAGAGTGGCTTGGCGTGCTCAACT
GGAGCCCTGGGGGTACTAAAGGCTATACGAGACGACAAAATCCAGACTAG
TACACCATTTACAACAGCGGCAGCTGCAGTAGCAACAACAACAACGACGA
CAACAACAAGCAGAACAACAAAAAGAAGAAGATGAAGAACAAGAACAAGA
ACAAGAACAACAACAACAACAACATCAACATCAACAACACAATGAAGTTG
G

Coding sequence (CDS) from alignment at scaffold_17:115990..117740+

>mRNA_6796 ID=mRNA_6796|Name=jgi.p|Nanoce1779_2|596342|organism=Nannochloropsis oceanica|type=CDS|length=2187bp|location=Sequence derived from alignment at scaffold_17:115990..117740+ (Nannochloropsis oceanica)
ATGAAGCTCAATATTGCCAACCCTTCAACGGGCCAGCAACACGTGGTAGA
GATTGACGATGAGAAGCGTCTGCGCGCGTTCTATGACCGACGCATCTCCC
AAGAGGTGGATGGCGTGCACATCGGAGACGAGTTTAAGGGCTACATCTTC
CGAATTTCCGGTGGCAACGACAAGCAAGGTTTTCCCATGAAGCAGGGCGT
GCTTACGGATCAGCGTGTCCGCCTCCTCCTCCGTAAGGGTCTCTCCTGCT
ATCGCGCGCGCCGAAAGGGCGAGCGTAAGCGCAAGTCCGTGCGTGGTGCC
ATCGTGGGGCCCGACCTTTCGGTCCTGAACCTAGTAGTGGTGAAGCGAGG
GGAGGAGCACGTGGCCGGCTTGACCGACAGCCAGGTGCCGCGTCGTCTGG
GCCCAAAGCGCGCTAATAAGATACGCAAGCTCTTCAACTTGTCTAAGGAG
GATGATGTGACCAAGTTCGCAATCTCCCGCACATTCGAGAACAAGAAGGG
CAAGACCGTTACTAAGCGGCCCAGCATCCAGCGACTTGTCACGCCCCTCA
CCCTGCAGCGCAAGCGACAGCGTTTGGCAGCTAAGAAGGCAGCGACTGCC
AAGGCTAAGACAGAGGCAGCTGAATACCATCGTATCTTCCAGCAGCGCCT
CAACGAGCGTAAGGAGTCTCGTCGTTCTGCCGTTTCCAAGCGTCGGTCCT
CTAGACGTGCCTCGGCCAAGGCCGAGTAAATGAAGCTCAATATTGCCAAC
CCTTCAACGGGCCAGCAACACGTGGTAGAGATTGACGATGAGAAGCGTCT
GCGCGCGTTCTATGACCGACGCATCTCCCAAGAGGTGGATGGCGTGCACA
TCGGAGACGAGTTTAAGGGCTACATCTTCCGAATTTCCGGTGGCAACGAC
AAGCAAGGTTTTCCCATGAAGCAGGGCGTGCTTACGGATCAGCGTGTCCG
CCTCCTCCTCCGTAAGGGTCTCTCCTGCTATCGCGCGCGCCGAAAGGGCG
AGCGTAAGCGCAAGTCCGTGCGTGGTGCCATCGTGGGGCCCGACCTTTCG
GTCCTGAACCTAGTAGTGGTGAAGCGAGGGGAGGAGCACGTGGCCGGCTT
GACCGACAGCCAGGTGCCGCGTCGTCTGGGCCCAAAGCGCGCTAATAAGA
TACGCAAGCTCTTCAACTTGTCTAAGGAGGATGATGTGACCAAGTTCGCA
ATCTCCCGCACATTCGAGAACAAGAAGGGCAAGACCGTTACTAAGCGGCC
CAGCATCCAGCGACTTGTCACGCCCCTCACCCTGCAGCGCAAGCGACAGC
GTTTGGCAGCTAAGAAGGCAGCGACTGCCAAGGCTAAGACAGAGGCAGCT
GAATACCATCGTATCTTCCAGCAGCGCCTCAACGAGCGTAAGGAGTCTCG
TCGTTCTGCCGTTTCCAAGCGTCGGTCCTCTAGACGTGCCTCGGCCAAGG
CCGAGTAAATGAAGCTCAATATTGCCAACCCTTCAACGGGCCAGCAACAC
GTGGTAGAGATTGACGATGAGAAGCGTCTGCGCGCGTTCTATGACCGACG
CATCTCCCAAGAGGTGGATGGCGTGCACATCGGAGACGAGTTTAAGGGCT
ACATCTTCCGAATTTCCGGTGGCAACGACAAGCAAGGTTTTCCCATGAAG
CAGGGCGTGCTTACGGATCAGCGTGTCCGCCTCCTCCTCCGTAAGGGTCT
CTCCTGCTATCGCGCGCGCCGAAAGGGCGAGCGTAAGCGCAAGTCCGTGC
GTGGTGCCATCGTGGGGCCCGACCTTTCGGTCCTGAACCTAGTAGTGGTG
AAGCGAGGGGAGGAGCACGTGGCCGGCTTGACCGACAGCCAGGTGCCGCG
TCGTCTGGGCCCAAAGCGCGCTAATAAGATACGCAAGCTCTTCAACTTGT
CTAAGGAGGATGATGTGACCAAGTTCGCAATCTCCCGCACATTCGAGAAC
AAGAAGGGCAAGACCGTTACTAAGCGGCCCAGCATCCAGCGACTTGTCAC
GCCCCTCACCCTGCAGCGCAAGCGACAGCGTTTGGCAGCTAAGAAGGCAG
CGACTGCCAAGGCTAAGACAGAGGCAGCTGAATACCATCGTATCTTCCAG
CAGCGCCTCAACGAGCGTAAGGAGTCTCGTCGTTCTGCCGTTTCCAAGCG
TCGGTCCTCTAGACGTGCCTCGGCCAAGGCCGAGTAA

Synonyms

Publications