jgi.p|Nanoce1779_2|596336, mRNA_6795 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596336
Unique NamemRNA_6795
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2186
Alignment locationscaffold_17:113151..115420 -

Link to JBrowse

Properties
Property NameValue
TranscriptId596422
TrackFilteredModels2
ProteinId596336
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:113151..115420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596336gene_6795Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596336mRNA_6795-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6795CDS_6795Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6795 ID=mRNA_6795|Name=jgi.p|Nanoce1779_2|596336|organism=Nannochloropsis oceanica|type=mRNA|length=2186bp
ACAGCAGAAAATATTACACATTTAGCCACCACGACCAGGACAAGGAGAAA
GGTTCTCCAGGTACGCAAAAACGCTATAGAGGCGAAGGTCGGGTCGTGGA
GACAAAATGCAGCAGCACGTCTCGTTCCACGCGGCTCCACAGCCCCAGAA
TGCCGACCCACGGCGGTCCAAACAAGTCTTTCCCTACCTATCTCTACGTG
CCCGCGACGGCGTCGAAGAACCCTACGTCTACGACTACATGGGTCTCATG
TCCCTCCTATTTGCAAGTGTAGCCGTTGTCACTAAAATCCGAATTTGTGT
CTGGCTCTCAGTCTTCGCCCTCGCCTCCGCGTCCGTTAACGTCCGGCGTT
CCTCCCTCGACAGCCGCACCCTTATGGGAGCCGGCATGGTGCTGACATTT
TCCGTTTACACAGTGTACACCCAAAATTTAGTCTCATTATAATGTGCTCC
ACTTATACATCGGAATGAGTTGTAAGTTCCATGCAACAAGTGCCCGGAGG
GAACCGAAATGAAAAGAAAGTAACATGAGCAGATATTTATCAAAACTCGG
AGTGTTTGCTAGGCGGCAAGGCAACAGAGGCCCATGCACGTTAAGTACAC
AAACATTGATTCAAATTTTCACTCCAATCTGAAGCCTTCTTATGAGATCC
ATCCCCTTCTTTTCCTCCTCCTCCCCTAGAGCAGTGGCACTCCTTCCACC
TTCCTTCTCCGTAAACATTTTACAAACCCTTTCACACTATACTTGTTCTC
TCCCTCCTCACTTTCTTGGTCCGTTCCCTTTTACCTCTTGTTGCTGCTGC
TGCAGCTACTGCTGCTTCTGCTGCTGCTAGCTTTCATTTAATCGAACTTA
CACCGAAAGGGAAAAAAATAAAAGAGCACAGTACAACACATTTTCATTTC
AGTCTCGCACTCATCACGCTAGAACTCACACCCGCTCTCTTCTGCTCCTC
GTCAACGAGGAGTATCTTCTACTGCTTTCGCTCACACTGCCGTCATCCCT
TCGAGCATCCACCCCAGTTTCAGCTGCTGACCGGTCACCCCGTTGTCTCT
GCAGCATCTTCAACCGACGTCGTCGTCGTTCCTCCACCTCCTCATTCCTT
CTCACCTTTCCCTCCTCCTCTGAGGTGCCTACTGCCAGTGTGACAGCTCT
GGATTCTGCCTCCTCCGCGTCCATCAGCACGGCTCCCACTCCTTCCTCGT
CCCCGATCTCACTGTAATGAAGGTGACTGGGAACATCGGAGGCTGAGCCC
CGCACTCCTCCCCCTCCCCCTCGGACAACCTTGGAGAACGAGGACGAGGA
CGCCGCACCCTTTCGTCGAAAGAGTCCACCATCACCACCTCCTCCGGAGG
AAGAGCGAACATGAGGTTGTGGTGCAGGATTTTGCTGCTGTTGCTGCTGT
TGCTGCTGCTTCACATCCTTGTTCATGTTGGCGCCCGGGGAACCCACACG
TTCCCGCCACTCGCGTGCGTGCAAGGCCACCTTCTCCTTCATGTGCTGGT
CACGATCCCGCAACAGGCCCTGCACCTTCATCCTGAGCTCCTCACACTGC
CTTCTGTACTCAATGTCTTGGGCATGCAGCCTCTCCGCCATCACTACATC
CCGCTTGGCCACCTCTTCCTTGAGACGTCGTCGATACAGATCCACCAGGT
CCGCCTCATACTTACTGCGTTCCGCCTTGCTCTGGGCCGAAATATCAGCC
ACTGTCTGATGACGCACCTCCTTGGCCCATGCATTTCGTTCCTGTGCGCG
GCTGTGGGCATACTCTTGACGAAGTTGTGCTTCTATATCGGCACGCAAGC
GTTGGGTGTCGTCCTCCGACAAGCTACCACTGCCATTTTTTTCTTGATCT
TTAAGGGCCTGCAGCCTCACTTGGTACTGCCGGAGCTCCCCTTGCATGTG
CTCTTTCGCTCCTCGCGCTTCCTCTACTTCTTTCCGCAGTTGATCGATGA
CGACGCGGGCGTTGTTGAGCTCTTCGACGCGGGAGGATTGGGCACGGGAA
GCCATGTCTGTCTTACTCTCCACCTCTCCTTGCAGGGCCTGTACCTTTGC
TTCTAACTCAGCAACAGTCTCTTGCAAATCATCTGCCAAACGACCTTGCC
GCGCTTTTTGATTATTGTATGTCTTTTTCAAATCGGGGCGGTAGCGCTGT
GACAGTTGATCTTGTTGCTGCTGTTGCTGCTGCTGT
back to top

protein sequence of jgi.p|Nanoce1779_2|596336

>mRNA_6795-protein ID=mRNA_6795-protein|Name=jgi.p|Nanoce1779_2|596336|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MQQHVSFHAAPQPQNADPRRSKQVFPYLSLRARDGVEEPYVYDYMGLMSL
LFASVAVVTKIRICVWLSVFALASASVNVRRSSLDSRTLMGAGMVLTFSV
YTVYTQNLVSL*
back to top

mRNA from alignment at scaffold_17:113151..115420-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6795 ID=mRNA_6795|Name=jgi.p|Nanoce1779_2|596336|organism=Nannochloropsis oceanica|type=mRNA|length=2270bp|location=Sequence derived from alignment at scaffold_17:113151..115420- (Nannochloropsis oceanica)
ACAGCAGAAAATATTACACATTTAGCCACCACGACCAGGACAAGGAGAAA
GGTTCTCCAGGTACGCAAAAACGCTATAGAGGCGAAGGTCGGGTCGTGGA
GACAAAATGCAGCAGCACGTCTCGTTCCACGCGGCTCCACAGCCCCAGAA
TGCCGACCCACGGCGGTCCAAACAAGTCTTTCCCTACCTATCTCTACGGT
AAATATGCAGCCGGGGCAATTCTTTTCCGCGTTCTGCTCATATTCCCCAC
CGCTCACAGATCGTTCCTTTTCACCTTCTTAGTGCCCGCGACGGCGTCGA
AGAACCCTACGTCTACGACTACATGGGTCTCATGTCCCTCCTATTTGCAA
GTGTAGCCGTTGTCACTAAAATCCGAATTTGTGTCTGGCTCTCAGTCTTC
GCCCTCGCCTCCGCGTCCGTTAACGTCCGGCGTTCCTCCCTCGACAGCCG
CACCCTTATGGGAGCCGGCATGGTGCTGACATTTTCCGTTTACACAGTGT
ACACCCAAAATTTAGTCTCATTATAATGTGCTCCACTTATACATCGGAAT
GAGTTGTAAGTTCCATGCAACAAGTGCCCGGAGGGAACCGAAATGAAAAG
AAAGTAACATGAGCAGATATTTATCAAAACTCGGAGTGTTTGCTAGGCGG
CAAGGCAACAGAGGCCCATGCACGTTAAGTACACAAACATTGATTCAAAT
TTTCACTCCAATCTGAAGCCTTCTTATGAGATCCATCCCCTTCTTTTCCT
CCTCCTCCCCTAGAGCAGTGGCACTCCTTCCACCTTCCTTCTCCGTAAAC
ATTTTACAAACCCTTTCACACTATACTTGTTCTCTCCCTCCTCACTTTCT
TGGTCCGTTCCCTTTTACCTCTTGTTGCTGCTGCTGCAGCTACTGCTGCT
TCTGCTGCTGCTAGCTTTCATTTAATCGAACTTACACCGAAAGGGAAAAA
AATAAAAGAGCACAGTACAACACATTTTCATTTCAGTCTCGCACTCATCA
CGCTAGAACTCACACCCGCTCTCTTCTGCTCCTCGTCAACGAGGAGTATC
TTCTACTGCTTTCGCTCACACTGCCGTCATCCCTTCGAGCATCCACCCCA
GTTTCAGCTGCTGACCGGTCACCCCGTTGTCTCTGCAGCATCTTCAACCG
ACGTCGTCGTCGTTCCTCCACCTCCTCATTCCTTCTCACCTTTCCCTCCT
CCTCTGAGGTGCCTACTGCCAGTGTGACAGCTCTGGATTCTGCCTCCTCC
GCGTCCATCAGCACGGCTCCCACTCCTTCCTCGTCCCCGATCTCACTGTA
ATGAAGGTGACTGGGAACATCGGAGGCTGAGCCCCGCACTCCTCCCCCTC
CCCCTCGGACAACCTTGGAGAACGAGGACGAGGACGCCGCACCCTTTCGT
CGAAAGAGTCCACCATCACCACCTCCTCCGGAGGAAGAGCGAACATGAGG
TTGTGGTGCAGGATTTTGCTGCTGTTGCTGCTGTTGCTGCTGCTTCACAT
CCTTGTTCATGTTGGCGCCCGGGGAACCCACACGTTCCCGCCACTCGCGT
GCGTGCAAGGCCACCTTCTCCTTCATGTGCTGGTCACGATCCCGCAACAG
GCCCTGCACCTTCATCCTGAGCTCCTCACACTGCCTTCTGTACTCAATGT
CTTGGGCATGCAGCCTCTCCGCCATCACTACATCCCGCTTGGCCACCTCT
TCCTTGAGACGTCGTCGATACAGATCCACCAGGTCCGCCTCATACTTACT
GCGTTCCGCCTTGCTCTGGGCCGAAATATCAGCCACTGTCTGATGACGCA
CCTCCTTGGCCCATGCATTTCGTTCCTGTGCGCGGCTGTGGGCATACTCT
TGACGAAGTTGTGCTTCTATATCGGCACGCAAGCGTTGGGTGTCGTCCTC
CGACAAGCTACCACTGCCATTTTTTTCTTGATCTTTAAGGGCCTGCAGCC
TCACTTGGTACTGCCGGAGCTCCCCTTGCATGTGCTCTTTCGCTCCTCGC
GCTTCCTCTACTTCTTTCCGCAGTTGATCGATGACGACGCGGGCGTTGTT
GAGCTCTTCGACGCGGGAGGATTGGGCACGGGAAGCCATGTCTGTCTTAC
TCTCCACCTCTCCTTGCAGGGCCTGTACCTTTGCTTCTAACTCAGCAACA
GTCTCTTGCAAATCATCTGCCAAACGACCTTGCCGCGCTTTTTGATTATT
GTATGTCTTTTTCAAATCGGGGCGGTAGCGCTGTGACAGTTGATCTTGTT
GCTGCTGTTGCTGCTGCTGT
back to top

Coding sequence (CDS) from alignment at scaffold_17:113151..115420-

>mRNA_6795 ID=mRNA_6795|Name=jgi.p|Nanoce1779_2|596336|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_17:113151..115420- (Nannochloropsis oceanica)
TGCCCGCGACGGCGTCGAAGAACCCTACGTCTACGACTACATGGGTCTCA
TGTCCCTCCTATTTGCAAGTGTAGCCGTTGTCACTAAAATCCGAATTTGT
GTCTGGCTCTCAGTCTTCGCCCTCGCCTCCGCGTCCGTTAACGTCCGGCG
TTCCTCCCTCGACAGCCGCACCCTTATGGGAGCCGGCATGGTGCTGACAT
TTTCCGTTTACACAGTGTACACCCAAAATTTAGTCTCATTATAAATGCAG
CAGCACGTCTCGTTCCACGCGGCTCCACAGCCCCAGAATGCCGACCCACG
GCGGTCCAAACAAGTCTTTCCCTACCTATCTCTACGTGCCCGCGACGGCG
TCGAAGAACCCTACGTCTACGACTACATGGGTCTCATGTCCCTCCTATTT
GCAAGTGTAGCCGTTGTCACTAAAATCCGAATTTGTGTCTGGCTCTCAGT
CTTCGCCCTCGCCTCCGCGTCCGTTAACGTCCGGCGTTCCTCCCTCGACA
GCCGCACCCTTATGGGAGCCGGCATGGTGCTGACATTTTCCGTTTACACA
GTGTACACCCAAAATTTAGTCTCATTATAAATGCAGCAGCACGTCTCGTT
CCACGCGGCTCCACAGCCCCAGAATGCCGACCCACGGCGGTCCAAACAAG
TCTTTCCCTACCTATCTCTACG
back to top
Synonyms
Publications