jgi.p|Nanoce1779_2|625905, mRNA_6794 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|625905
Unique Name	mRNA_6794
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3049
Alignment location	scaffold_17:113151..117740 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	625991
Track	FilteredModels2
ProteinId	625905

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:113151..117740 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|625905	gene_6794	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|625905	mRNA_6794-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6794	CDS_6794	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:113151..117740+
coding sequence from alignment at scaffold_17:113151..117740+

mRNA sequence

>mRNA_6794 ID=mRNA_6794|Name=jgi.p|Nanoce1779_2|625905|organism=Nannochloropsis oceanica|type=mRNA|length=3049bp
ACAGCAGCAGCAACAGCAGCAACAAGATCAACTGTCACAGCGCTACCGCC
CCGATTTGAAAAAGACATACAATAATCAAAAAGCGCGGCAAGGTCGTTTG
GCAGATGATTTGCAAGAGACTGTTGCTGAGTTAGAAGCAAAGGTACAGGC
CCTGCAAGGAGAGGTGGAGAGTAAGACAGACATGGCTTCCCGTGCCCAAT
CCTCCCGCGTCGAAGAGCTCAACAACGCCCGCGTCGTCATCGATCAACTG
CGGAAAGAAGTAGAGGAAGCGCGAGGAGCGAAAGAGCACATGCAAGGGGA
GCTCCGGCAGTACCAAGTGAGGCTGCAGGCCCTTAAAGATCAAGAAAAAA
ATGGCAGTGGTAGCTTGTCGGAGGACGACACCCAACGCTTGCGTGCCGAT
ATAGAAGCACAACTTCGTCAAGAGTATGCCCACAGCCGCGCACAGGAACG
AAATGCATGGGCCAAGGAGGTGCGTCATCAGACAGTGGCTGATATTTCGG
CCCAGAGCAAGGCGGAACGCAGTAAGTATGAGGCGGACCTGGTGGATCTG
TATCGACGACGTCTCAAGGAAGAGGTGGCCAAGCGGGATGTAGTGATGGC
GGAGAGGCTGCATGCCCAAGACATTGAGTACAGAAGGCAGTGTGAGGAGC
TCAGGATGAAGGTGCAGGGCCTGTTGCGGGATCGTGACCAGCACATGAAG
GAGAAGGTGGCCTTGCACGCACGCGAGTGGCGGGAACGTGTGGGTTCCCC
GGGCGCCAACATGAACAAGGATGTGAAGCAGCAGCAACAGCAGCAACAGC
AGCAAAATCCTGCACCACAACCTCATGTTCGCTCTTCCTCCGGAGGAGGT
GGTGATGGTGGACTCTTTCGACGAAAGGGTGCGGCGTCCTCGTCCTCGTT
CTCCAAGGTTGTCCGAGGGGGAGGGGGAGGAGTGCGGGGCTCAGCCTCCG
ATGTTCCCAGTCACCTTCATTACAGTGAGATCGGGGACGAGGAAGGAGTG
GGAGCCGTGCTGATGGACGCGGAGGAGGCAGAATCCAGAGCTGTCACACT
GGCAGTAGGCACCTCAGAGGAGGAGGGAAAGGTGAGAAGGAATGAGGAGG
TGGAGGAACGACGACGACGTCGGTTGAAGATGCTGCAGAGACAACGGGGT
GACCGGTCAGCAGCTGAAACTGGGGTGGATGCTCGAAGGGATGACGGCAG
TGTGAGCGAAAGCAGTAGAAGATACTCCTCGTTGACGAGGAGCAGAAGAG
AGCGGGTGTGAGTTCTAGCGTGATGAGTGCGAGACTGAAATGAAAATGTG
TTGTACTGTGCTCTTTTATTTTTTTCCCTTTCGGTGTAAGTTCGATTAAA
TGAAAGCTAGCAGCAGCAGAAGCAGCAGTAGCTGCAGCAGCAGCAACAAG
AGGTAAAAGGGAACGGACCAAGAAAGTGAGGAGGGAGAGAACAAGTATAG
TGTGAAAGGGTTTGTAAAATGTTTACGGAGAAGGAAGGTGGAAGGAGTGC
CACTGCTCTAGGGGAGGAGGAGGAAAAGAAGGGGATGGATCTCATAAGAA
GGCTTCAGATTGGAGTGAAAATTTGAATCAATGTTTGTGTACTTAACGTG
CATGGGCCTCTGTTGCCTTGCCGCCTAGCAAACACTCCGAGTTTTGATAA
ATATCTGCTCATGTTACTTTCTTTTCATTTCGGTTCCCTCCGGGCACTTG
TTGCATGGAACTTACAACTCATTCCGATGTATAAGTGGAGCACATTATAA
TGAGACTAAATTTTGGGTGTACACTGTGTAAACGGAAAATGTCAGCACCA
TGCCGGCTCCCATAAGGCTCAATATTGCCAACCCTTCAACGGGCCAGCAA
CACGTGGTAGAGATTGACGATGAGAAGCGTCTGCGCGCGTTCTATGACCG
ACGCATCTCCCAAGAGGTGGATGGCGTGCACATCGGAGACGAGTTTAAGG
GCTACATCTTCCGAATTTCCGGTGGCAACGACAAGCAAGGTTTTCCCATG
AAGCAGGGCGTGCTTACGGATCAGCGTGTCCGCCTCCTCCTCCGTAAGGG
TCTCTCCTGCTATCGCGCGCGCCGAAAGGGCGAGCGTAAGCGCAAGTCCG
TGCGTGGTGCCATCGTGGGGCCCGACCTTTCGGTCCTGAACCTAGTAGTG
GTGAAGCGAGGGGAGGAGCACGTGGCCGGCTTGACCGACAGCCAGGTGCC
GCGTCGTCTGGGCCCAAAGCGCGCTAATAAGATACGCAAGCTCTTCAACT
TGTCTAAGGAGGATGATGTGACCAAGTTCGCAATCTCCCGCACATTCGAG
AACAAGAAGGGCAAGACCGTTACTAAGCGGCCCAGCATCCAGCGACTTGT
CACGCCCCTCACCCTGCAGCGCAAGCGACAGCGTTTGGCAGCTAAGAAGG
CAGCGACTGCCAAGGCTAAGACAGAGGCAGCTGAATACCATCGTATCTTC
CAGCAGCGCCTCAACGAGCGTAAGGAGTCTCGTCGTTCTGCCGTTTCCAA
GCGTCGGTCCTCTAGACGTGCCTCGGCCAAGGCCGAGTAAGACTCAGACT
TGACTTGCGATGTGGTGCTGACTTGAAAGAAAGAAGGATAGACTTTTGGG
TAGGGTGTTACGCGTCATCGATCACGGGGTTTTGATTTTGGTCGGGAATA
GAACTGGGACACGCGCTTGATCAGAAATAGAGAAGAGACGCTGGGCATCA
ACATTGCAGGACATCAACAGCAAGAGAAGAGTGAGGTGGGAGGGCCAATC
GGGAACGAAGAGGCGCTGGTTGTTAGTGATGGCTTTTTCGTTTTCTCAAG
GTCGGAAGGAACATGATGGGGTGCGAGAGTGGCTTGGCGTGCTCAACTGG
AGCCCTGGGGGTACTAAAGGCTATACGAGACGACAAAATCCAGACTAGTA
CACCATTTACAACAGCGGCAGCTGCAGTAGCAACAACAACAACGACGACA
ACAACAAGCAGAACAACAAAAAGAAGAAGATGAAGAACAAGAACAAGAAC
AAGAACAACAACAACAACAACATCAACATCAACAACACAATGAAGTTGG

protein sequence of jgi.p|Nanoce1779_2|625905

>mRNA_6794-protein ID=mRNA_6794-protein|Name=jgi.p|Nanoce1779_2|625905|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MASRAQSSRVEELNNARVVIDQLRKEVEEARGAKEHMQGELRQYQVRLQA
LKDQEKNGSGSLSEDDTQRLRADIEAQLRQEYAHSRAQERNAWAKEVRHQ
TVADISAQSKAERSKYEADLVDLYRRRLKEEVAKRDVVMAERLHAQDIEY
RRQCEELRMKVQGLLRDRDQHMKEKVALHAREWRERVGSPGANMNKDVKQ
QQQQQQQQNPAPQPHVRSSSGGGGDGGLFRRKGAASSSSFSKVVRGGGGG
VRGSASDVPSHLHYSEIGDEEGVGAVLMDAEEAESRAVTLAVGTSEEEGK
VRRNEEVEERRRRRLKMLQRQRGDRSAAETGVDARRDDGSVSESSRRYSS
LTRSRRERV*

mRNA from alignment at scaffold_17:113151..117740+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6794 ID=mRNA_6794|Name=jgi.p|Nanoce1779_2|625905|organism=Nannochloropsis oceanica|type=mRNA|length=4590bp|location=Sequence derived from alignment at scaffold_17:113151..117740+ (Nannochloropsis oceanica)
ACAGCAGCAGCAACAGCAGCAACAAGATCAACTGTCACAGCGCTACCGCC
CCGATTTGAAAAAGACATACAATAATCAAAAAGCGCGGCAAGGTCGTTTG
GCAGATGATTTGCAAGAGACTGTTGCTGAGTTAGAAGCAAAGGTACAGGC
CCTGCAAGGAGAGGTGGAGAGTAAGACAGACATGGCTTCCCGTGCCCAAT
CCTCCCGCGTCGAAGAGCTCAACAACGCCCGCGTCGTCATCGATCAACTG
CGGAAAGAAGTAGAGGAAGCGCGAGGAGCGAAAGAGCACATGCAAGGGGA
GCTCCGGCAGTACCAAGTGAGGCTGCAGGCCCTTAAAGATCAAGAAAAAA
ATGGCAGTGGTAGCTTGTCGGAGGACGACACCCAACGCTTGCGTGCCGAT
ATAGAAGCACAACTTCGTCAAGAGTATGCCCACAGCCGCGCACAGGAACG
AAATGCATGGGCCAAGGAGGTGCGTCATCAGACAGTGGCTGATATTTCGG
CCCAGAGCAAGGCGGAACGCAGTAAGTATGAGGCGGACCTGGTGGATCTG
TATCGACGACGTCTCAAGGAAGAGGTGGCCAAGCGGGATGTAGTGATGGC
GGAGAGGCTGCATGCCCAAGACATTGAGTACAGAAGGCAGTGTGAGGAGC
TCAGGATGAAGGTGCAGGGCCTGTTGCGGGATCGTGACCAGCACATGAAG
GAGAAGGTGGCCTTGCACGCACGCGAGTGGCGGGAACGTGTGGGTTCCCC
GGGCGCCAACATGAACAAGGATGTGAAGCAGCAGCAACAGCAGCAACAGC
AGCAAAATCCTGCACCACAACCTCATGTTCGCTCTTCCTCCGGAGGAGGT
GGTGATGGTGGACTCTTTCGACGAAAGGGTGCGGCGTCCTCGTCCTCGTT
CTCCAAGGTTGTCCGAGGGGGAGGGGGAGGAGTGCGGGGCTCAGCCTCCG
ATGTTCCCAGTCACCTTCATTACAGTGAGATCGGGGACGAGGAAGGAGTG
GGAGCCGTGCTGATGGACGCGGAGGAGGCAGAATCCAGAGCTGTCACACT
GGCAGTAGGCACCTCAGAGGAGGAGGGAAAGGTGAGAAGGAATGAGGAGG
TGGAGGAACGACGACGACGTCGGTTGAAGATGCTGCAGAGACAACGGGGT
GACCGGTCAGCAGCTGAAACTGGGGTGGATGCTCGAAGGGATGACGGCAG
TGTGAGCGAAAGCAGTAGAAGATACTCCTCGTTGACGAGGAGCAGAAGAG
AGCGGGTGTGAGTTCTAGCGTGATGAGTGCGAGACTGAAATGAAAATGTG
TTGTACTGTGCTCTTTTATTTTTTTCCCTTTCGGTGTAAGTTCGATTAAA
TGAAAGCTAGCAGCAGCAGAAGCAGCAGTAGCTGCAGCAGCAGCAACAAG
AGGTAAAAGGGAACGGACCAAGAAAGTGAGGAGGGAGAGAACAAGTATAG
TGTGAAAGGGTTTGTAAAATGTTTACGGAGAAGGAAGGTGGAAGGAGTGC
CACTGCTCTAGGGGAGGAGGAGGAAAAGAAGGGGATGGATCTCATAAGAA
GGCTTCAGATTGGAGTGAAAATTTGAATCAATGTTTGTGTACTTAACGTG
CATGGGCCTCTGTTGCCTTGCCGCCTAGCAAACACTCCGAGTTTTGATAA
ATATCTGCTCATGTTACTTTCTTTTCATTTCGGTTCCCTCCGGGCACTTG
TTGCATGGAACTTACAACTCATTCCGATGTATAAGTGGAGCACATTATAA
TGAGACTAAATTTTGGGTGTACACTGTGTAAACGGAAAATGTCAGCACCA
TGCCGGCTCCCATAAGGGTGCGGCTGTCGAGGGAGGAACGCCGGACGTTA
ACGGACGCGGAGGCGAGGGCGAAGACTGAGAGCCAGACACAAATTCGGAT
TTTAGTGACAACGGCTACACTTGCAAATAGGAGGGACATGAGACCCATGT
AGTCGTAGACGTAGGGTTCTTCGACGCCGTCGCGGGCACTAAGAAGGTGA
AAAGGAACGATCTGTGAGCGGTGGGGAATATGAGCAGAACGCGGAAAAGA
ATTGCCCCGGCTGCATATTTACCGTAGAGATAGGTAGGGAAAGACTTGTT
TGGACCGCCGTGGGTCGGCATTCTGGGGCTGTGGAGCCGCGTGGAACGAG
ACGTGCTGCTGCATTTTGTCTCCACGACCCGACCTTCGCCTCTATAGCGT
TTTTGCGTACCTGGAGAACCTTTCTCCTTGTCCTGGTCGTGGTGGCTAAA
TGTGTAATATTTTCTGCTGTAGATATACATATGTTGGTGTGGTGCATGTG
AGTGTGGGTACAAACTTAAATGTTGCCTGCTTAAACGCACCTGAAGTATT
GAGGCAACGGGAACAGGTCGGAGAGATGGCACGACGTCGCTAGCACAGGC
CTGTGTTCTCTCTCGTGCTCCACCCTTCGCTTCCACACAAGCATCAGAGA
AGAACTTGTCACAATGTCTTTGTCCCCACCTTCCTCATGCCCGTAGGGCT
CAAATTAATTCTGTGCGTCCATCCTCACCCATCCCCTTCAATGTAGGCCC
CAGAGGTGCAGGGACCTGATCAGGCTGTCGGTTGTGGACGGCTGTGAGAA
GCCTCGCCCCCCCCACTTCCGCCCTCACTTGTTTTCGTCCAAGAGGAAAG
AGGGAACGGCGTTGGCCTTGATCATGGACATCCAGGAGGACTGTGCATCA
GACCTAGGCGAATGCCGTCCATGGGCGCATTTAAATTTCTGCGTCGTTGG
ATGGAGAGAGACTATGGAGGAGCACTCCGTCATCAGCACCCAGCCACCAT
CCTTACGCTAACGCCATGCCCTGTCCCCCGTACACATCAAACAGGAGGCC
GTCTCATTTCGGACAACGCCGTTATGAAGGTAAGCATGCGTCTTGTGTGC
GTCTGCAATATCTCCTCCATTTCTTCCCTCTCATGGGTAGAGGTATGACC
ACTCACTCACTTGCTGCCCTCCCTCCCTATCCTTTCCTCGTCCACAGCTC
AATATTGCCAACCCTTCAACGGGCCAGCAACACGTGGTAGAGATTGACGA
TGAGAAGCGTCTGCGCGCGTTCTATGACCGACGCATCTCCCAAGAGGTGG
ATGGCGTGCACATCGGAGACGAGTTTAAGGGCTACATCTTCCGAATTTCC
GGTGGCAACGACAAGCAAGGTTTTCCCATGAAGCAGGGCGTGCTTACGGA
TCAGCGTGTCCGCCTCCTCCTCCGTAAGGGTCTCTCCTGCTATCGCGCGC
GCCGAAAGGGCGAGCGTAAGCGCAAGTCCGTGCGTGGTGCCATCGTGGGG
CCCGACCTTTCGGTCCTGAACCTAGTAGTGGTGAAGCGAGGGGAGGAGCA
CGTGGCCGGCTTGACCGACAGCCAGGTGCCGCGTCGTCTGGGCCCAAAGC
GCGCTAATAAGATACGCAAGCTCTTCAACTTGTCTAAGGAGGATGATGTG
ACCAAGTTCGCAATCTCCCGCACATTCGAGAACAAGAAGGGCAAGACCGT
TACTAAGCGGCCCAGCATCCAGCGACTTGTCACGCCCCTCACCCTGCAGG
TTCGCGACTGGGATGGAGAAAGAGAAGAACAAGGAGGAGGAAGAGAGGGA
GGAGGGTTGAAAAGATGATAAAACACCATGTCACAGACCTGTTCTGAAAA
CCTGGGGGGCGGAGGGGGGACTCAAGGAAGGAGGGACGTGGAAGGAAGAG
GGGTTGAATAAATCTCTCTTCTTTCAACCCTCCTTTGCCTCCTTCGTCTG
CTTCCCGCTACGTGTGTGACACAACATGCACCACTATCTGATCAACACTG
TGCATCCGCATTCAACACATATGCATCGCGCTCTGATCGAATGAATGATC
CCTGCTGTTACTCACTCGTTTTCCCTTTTTCCGCCCTTCGCCCCACTCAA
ACACTGACAGCGCAAGCGACAGCGTTTGGCAGCTAAGAAGGCAGCGACTG
CCAAGGCTAAGACAGAGGCAGCTGAATACCATCGTATCTTCCAGCAGCGC
CTCAACGAGCGTAAGGAGTCTCGTCGTTCTGCCGTTTCCAAGCGTCGGTC
CTCTAGACGTGCCTCGGCCAAGGCCGAGTAAGACTCAGACTTGACTTGCG
ATGTGGTGCTGACTTGAAAGAAAGAAGGATAGACTTTTGGGTAGGGTGTT
ACGCGTCATCGATCACGGGGTTTTGATTTTGGTCGGGAATAGAACTGGGA
CACGCGCTTGATCAGAAATAGAGAAGAGACGCTGGGCATCAACATTGCAG
GACATCAACAGCAAGAGAAGAGTGAGGTGGGAGGGCCAATCGGGAACGAA
GAGGCGCTGGTTGTTAGTGATGGCTTTTTCGTTTTCTCAAGGTCGGAAGG
AACATGATGGGGTGCGAGAGTGGCTTGGCGTGCTCAACTGGAGCCCTGGG
GGTACTAAAGGCTATACGAGACGACAAAATCCAGACTAGTACACCATTTA
CAACAGCGGCAGCTGCAGTAGCAACAACAACAACGACGACAACAACAAGC
AGAACAACAAAAAGAAGAAGATGAAGAACAAGAACAAGAACAAGAACAAC
AACAACAACAACATCAACATCAACAACACAATGAAGTTGG

Coding sequence (CDS) from alignment at scaffold_17:113151..117740+

>mRNA_6794 ID=mRNA_6794|Name=jgi.p|Nanoce1779_2|625905|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_17:113151..117740+ (Nannochloropsis oceanica)
ATGGCTTCCCGTGCCCAATCCTCCCGCGTCGAAGAGCTCAACAACGCCCG
CGTCGTCATCGATCAACTGCGGAAAGAAGTAGAGGAAGCGCGAGGAGCGA
AAGAGCACATGCAAGGGGAGCTCCGGCAGTACCAAGTGAGGCTGCAGGCC
CTTAAAGATCAAGAAAAAAATGGCAGTGGTAGCTTGTCGGAGGACGACAC
CCAACGCTTGCGTGCCGATATAGAAGCACAACTTCGTCAAGAGTATGCCC
ACAGCCGCGCACAGGAACGAAATGCATGGGCCAAGGAGGTGCGTCATCAG
ACAGTGGCTGATATTTCGGCCCAGAGCAAGGCGGAACGCAGTAAGTATGA
GGCGGACCTGGTGGATCTGTATCGACGACGTCTCAAGGAAGAGGTGGCCA
AGCGGGATGTAGTGATGGCGGAGAGGCTGCATGCCCAAGACATTGAGTAC
AGAAGGCAGTGTGAGGAGCTCAGGATGAAGGTGCAGGGCCTGTTGCGGGA
TCGTGACCAGCACATGAAGGAGAAGGTGGCCTTGCACGCACGCGAGTGGC
GGGAACGTGTGGGTTCCCCGGGCGCCAACATGAACAAGGATGTGAAGCAG
CAGCAACAGCAGCAACAGCAGCAAAATCCTGCACCACAACCTCATGTTCG
CTCTTCCTCCGGAGGAGGTGGTGATGGTGGACTCTTTCGACGAAAGGGTG
CGGCGTCCTCGTCCTCGTTCTCCAAGGTTGTCCGAGGGGGAGGGGGAGGA
GTGCGGGGCTCAGCCTCCGATGTTCCCAGTCACCTTCATTACAGTGAGAT
CGGGGACGAGGAAGGAGTGGGAGCCGTGCTGATGGACGCGGAGGAGGCAG
AATCCAGAGCTGTCACACTGGCAGTAGGCACCTCAGAGGAGGAGGGAAAG
GTGAGAAGGAATGAGGAGGTGGAGGAACGACGACGACGTCGGTTGAAGAT
GCTGCAGAGACAACGGGGTGACCGGTCAGCAGCTGAAACTGGGGTGGATG
CTCGAAGGGATGACGGCAGTGTGAGCGAAAGCAGTAGAAGATACTCCTCG
TTGACGAGGAGCAGAAGAGAGCGGGTGTGA

Synonyms

Publications