jgi.p|Nanoce1779_2|631778, mRNA_6793 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|631778
Unique Name	mRNA_6793
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2261
Alignment location	scaffold_17:110913..113173 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	631864
Track	FilteredModels2
ProteinId	631778

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:110913..113173 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631778	gene_6793	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631778	mRNA_6793-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6793	CDS_6793	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:110913..113173+
coding sequence from alignment at scaffold_17:110913..113173+

mRNA sequence

>mRNA_6793 ID=mRNA_6793|Name=jgi.p|Nanoce1779_2|631778|organism=Nannochloropsis oceanica|type=mRNA|length=2261bp
AAACATAGTCAGCTTGTACATTGGAATCAATTCAGATGAGATCTTGTTTT
CGGTTCTGTATGGTGAAAATGACACGCATCTGGCTTCCTCCGGTTCCTTG
TTTCCTTCCAAGCACACGTCCACTTGCTTGGTCTCTTACTCCCTCATAAT
ACGCCATTTCCGGTCAAGGTTTCATGACCGTGCTCTTCTTCCTCTTTTTG
TCGTCCTGGATAAAGTGGGTAATTTGGGCGGCGAGGGGCCATCGGCAGTC
CCAAAACGTGTCCCACTACAGTTTTGCTTCCGCGAATCAACCTGCTTGCC
ACAGGCACTATCGTAATTGTAAGACCCAGGGCCAACGTCGGTATGATGAC
GTCTGCAGTCACTGCGGGTGCTACAGATACTGCTGCTGCTGTTGCTGCTG
GGAAGGCTGCGGCTCCTGGCGAACATGGTGGAGGGGGGATTGATCTTGGT
GGACAAGGCTTGCGGGCCCATGGCTTCCTTGAGCTGGTATTGCCCGGGTC
CAGGCTCCAACTTGGTATTGCCACGTGGAAAATGGCCCTTGGGGAAAGAA
AATCGTGGCGCATTCCTCTCCTTGGGATTAACCATCAAGAACCCGACGTG
TTGTTGAATGCAAACGTAATCGCCCGGGCCGGGCGTAGCGGCCGCGGACT
GCATGGACGAAGTGCTGTCGCTTCCAAAGGTGGTGCGACTCCGTAATGAA
AAGCCAGTGTTGGAGCGGATCCTTGAGTCGGCTACGTGTCCGATAAGTGT
GGATTTGAGGCGGTATGTGCCCGGACCTGGAGTGTCTTCATTACCCCCAC
CGAGGCATGGCCTCGGGCAGCACCCAAAGCCATACGACTGGACGGCAGGT
GACACGGCCTCATACGATCGCATGACCTGGTCTTTCGCTTTGAATTTGAT
TGATTCCGTCTTGGCGGTGGAGAAGAGAGCAAAGGGGGGGGGGGGGCATT
TTTTGGTGGTCGGGGTTAGCGAGAAAGAAGGGTTTTGAGACGCGAGAGCA
CCAGTAGGCGGACCAATCAAAATGTGCCGATGGATGACAGCAAAAGAATG
TCTTGTTGAGCTAGATCCAGCGCCAAATTTGATCGGAAATCTAATCTAAT
GTGCCTCGGGAGGAGTAGGGGGTAAAATTTAGTGGCGAGTTATTACAAAA
AGCTTTTCGAGGAGAAGCATTTACAGGTCAAGTGTAATGCTTGTATTAAG
AGAGGAACAAAGCTTCAAAGTCCACAAAATCTGTATGCTACCGCTAGCAT
TTTAAGGATTCGGGAAACGAAGGGTTGGAGAAGGAGGAATGGATCACAGT
CAGTGACAAGGTCGTTGTGGTGGCAAGCATGAAACGGACTTAAAAGGCCT
TCCCGCCCTTTCCTCCATCCCTGTCCAAGCATCAAAGCAGACCGTGCGAT
TTCGGGTCAGTTATGTCTGGATTATGCCACGGCGGCGATGCTTTAAGTGT
AGCAATTTACCTCTAATTAAGTATGCCTCGCTCGATGACACCTCCGAAGA
AGCATAGCAGCATCACCTTTCTATCCGTATTATTCTTCACACACCACAAA
CGAATACGACAGGCGTTCCACCACAGGTCCAAAGTCAAGCCACGAAAGGA
ATGCGGGCCTTAGTCCAGGCGTTGGTGGCGGGCCCGGTAGCATTGATTCT
ACTGCTTGCCCTCATCTGTGCCCACCAGCCCTACACGGCCCAGGCATTCA
CAGGCGGCACTGGCGGCTTCAGCCTGAGCGAGTTGCCCGAGGAATTATTT
GACGAGGACGGCACAAGCACCACGAGCAGCACCACCGACTTTTCAGACTT
GTCCATGCGCAGCCACAAGTTATCCGCTCGGGCCAGTGGCAGCCGTGGAA
GCGGCCAGGCGAGCCATGCTTCGTGGGAGACCTTGCGCACACAGGGTCAC
AAAGCCTTGGTTCCCTCCCTCGTCACGGCGGCCACGGTGGCCGTGGGCGC
CACGGGGCGCGTGTTGCAGAAGCGGTATGGTTCGACGATGACCCGCATGT
GGCAAGAGCACCAGGAAGCCCGGCGTTTACGCCTGGAGAAGCGGCTGTTG
GAGCGCGAGATCAAGGAGGAGCAACGCCGGTACCAGCAAGAGATGCGACG
CATGACCGAGGAGCAGGAGCGGGATGAAAGCGAAGCGACCGCGGTCGCCA
AGGCAGAGTTCGAGGCCGAGGAAGAGTTGCGGCGTATGCGGCTGCGGGTA
ACTGGGTCCATGACCGCGGAGAAAGATGAGCTCGCGCAACAGCAGCAGCA
ACAGCAGCAAC

protein sequence of jgi.p|Nanoce1779_2|631778

>mRNA_6793-protein ID=mRNA_6793-protein|Name=jgi.p|Nanoce1779_2|631778|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MRALVQALVAGPVALILLLALICAHQPYTAQAFTGGTGGFSLSELPEELF
DEDGTSTTSSTTDFSDLSMRSHKLSARASGSRGSGQASHASWETLRTQGH
KALVPSLVTAATVAVGATGRVLQKRYGSTMTRMWQEHQEARRLRLEKRLL
EREIKEEQRRYQQEMRRMTEEQERDESEATAVAKAEFEAEEELRRMRLRV
TGSMTAEKDELAQQQQQQQQ

mRNA from alignment at scaffold_17:110913..113173+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6793 ID=mRNA_6793|Name=jgi.p|Nanoce1779_2|631778|organism=Nannochloropsis oceanica|type=mRNA|length=2261bp|location=Sequence derived from alignment at scaffold_17:110913..113173+ (Nannochloropsis oceanica)
AAACATAGTCAGCTTGTACATTGGAATCAATTCAGATGAGATCTTGTTTT
CGGTTCTGTATGGTGAAAATGACACGCATCTGGCTTCCTCCGGTTCCTTG
TTTCCTTCCAAGCACACGTCCACTTGCTTGGTCTCTTACTCCCTCATAAT
ACGCCATTTCCGGTCAAGGTTTCATGACCGTGCTCTTCTTCCTCTTTTTG
TCGTCCTGGATAAAGTGGGTAATTTGGGCGGCGAGGGGCCATCGGCAGTC
CCAAAACGTGTCCCACTACAGTTTTGCTTCCGCGAATCAACCTGCTTGCC
ACAGGCACTATCGTAATTGTAAGACCCAGGGCCAACGTCGGTATGATGAC
GTCTGCAGTCACTGCGGGTGCTACAGATACTGCTGCTGCTGTTGCTGCTG
GGAAGGCTGCGGCTCCTGGCGAACATGGTGGAGGGGGGATTGATCTTGGT
GGACAAGGCTTGCGGGCCCATGGCTTCCTTGAGCTGGTATTGCCCGGGTC
CAGGCTCCAACTTGGTATTGCCACGTGGAAAATGGCCCTTGGGGAAAGAA
AATCGTGGCGCATTCCTCTCCTTGGGATTAACCATCAAGAACCCGACGTG
TTGTTGAATGCAAACGTAATCGCCCGGGCCGGGCGTAGCGGCCGCGGACT
GCATGGACGAAGTGCTGTCGCTTCCAAAGGTGGTGCGACTCCGTAATGAA
AAGCCAGTGTTGGAGCGGATCCTTGAGTCGGCTACGTGTCCGATAAGTGT
GGATTTGAGGCGGTATGTGCCCGGACCTGGAGTGTCTTCATTACCCCCAC
CGAGGCATGGCCTCGGGCAGCACCCAAAGCCATACGACTGGACGGCAGGT
GACACGGCCTCATACGATCGCATGACCTGGTCTTTCGCTTTGAATTTGAT
TGATTCCGTCTTGGCGGTGGAGAAGAGAGCAAAGGGGGGGGGGGGGCATT
TTTTGGTGGTCGGGGTTAGCGAGAAAGAAGGGTTTTGAGACGCGAGAGCA
CCAGTAGGCGGACCAATCAAAATGTGCCGATGGATGACAGCAAAAGAATG
TCTTGTTGAGCTAGATCCAGCGCCAAATTTGATCGGAAATCTAATCTAAT
GTGCCTCGGGAGGAGTAGGGGGTAAAATTTAGTGGCGAGTTATTACAAAA
AGCTTTTCGAGGAGAAGCATTTACAGGTCAAGTGTAATGCTTGTATTAAG
AGAGGAACAAAGCTTCAAAGTCCACAAAATCTGTATGCTACCGCTAGCAT
TTTAAGGATTCGGGAAACGAAGGGTTGGAGAAGGAGGAATGGATCACAGT
CAGTGACAAGGTCGTTGTGGTGGCAAGCATGAAACGGACTTAAAAGGCCT
TCCCGCCCTTTCCTCCATCCCTGTCCAAGCATCAAAGCAGACCGTGCGAT
TTCGGGTCAGTTATGTCTGGATTATGCCACGGCGGCGATGCTTTAAGTGT
AGCAATTTACCTCTAATTAAGTATGCCTCGCTCGATGACACCTCCGAAGA
AGCATAGCAGCATCACCTTTCTATCCGTATTATTCTTCACACACCACAAA
CGAATACGACAGGCGTTCCACCACAGGTCCAAAGTCAAGCCACGAAAGGA
ATGCGGGCCTTAGTCCAGGCGTTGGTGGCGGGCCCGGTAGCATTGATTCT
ACTGCTTGCCCTCATCTGTGCCCACCAGCCCTACACGGCCCAGGCATTCA
CAGGCGGCACTGGCGGCTTCAGCCTGAGCGAGTTGCCCGAGGAATTATTT
GACGAGGACGGCACAAGCACCACGAGCAGCACCACCGACTTTTCAGACTT
GTCCATGCGCAGCCACAAGTTATCCGCTCGGGCCAGTGGCAGCCGTGGAA
GCGGCCAGGCGAGCCATGCTTCGTGGGAGACCTTGCGCACACAGGGTCAC
AAAGCCTTGGTTCCCTCCCTCGTCACGGCGGCCACGGTGGCCGTGGGCGC
CACGGGGCGCGTGTTGCAGAAGCGGTATGGTTCGACGATGACCCGCATGT
GGCAAGAGCACCAGGAAGCCCGGCGTTTACGCCTGGAGAAGCGGCTGTTG
GAGCGCGAGATCAAGGAGGAGCAACGCCGGTACCAGCAAGAGATGCGACG
CATGACCGAGGAGCAGGAGCGGGATGAAAGCGAAGCGACCGCGGTCGCCA
AGGCAGAGTTCGAGGCCGAGGAAGAGTTGCGGCGTATGCGGCTGCGGGTA
ACTGGGTCCATGACCGCGGAGAAAGATGAGCTCGCGCAACAGCAGCAGCA
ACAGCAGCAAC

Coding sequence (CDS) from alignment at scaffold_17:110913..113173+

>mRNA_6793 ID=mRNA_6793|Name=jgi.p|Nanoce1779_2|631778|organism=Nannochloropsis oceanica|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_17:110913..113173+ (Nannochloropsis oceanica)
ATGCGGGCCTTAGTCCAGGCGTTGGTGGCGGGCCCGGTAGCATTGATTCT
ACTGCTTGCCCTCATCTGTGCCCACCAGCCCTACACGGCCCAGGCATTCA
CAGGCGGCACTGGCGGCTTCAGCCTGAGCGAGTTGCCCGAGGAATTATTT
GACGAGGACGGCACAAGCACCACGAGCAGCACCACCGACTTTTCAGACTT
GTCCATGCGCAGCCACAAGTTATCCGCTCGGGCCAGTGGCAGCCGTGGAA
GCGGCCAGGCGAGCCATGCTTCGTGGGAGACCTTGCGCACACAGGGTCAC
AAAGCCTTGGTTCCCTCCCTCGTCACGGCGGCCACGGTGGCCGTGGGCGC
CACGGGGCGCGTGTTGCAGAAGCGGTATGGTTCGACGATGACCCGCATGT
GGCAAGAGCACCAGGAAGCCCGGCGTTTACGCCTGGAGAAGCGGCTGTTG
GAGCGCGAGATCAAGGAGGAGCAACGCCGGTACCAGCAAGAGATGCGACG
CATGACCGAGGAGCAGGAGCGGGATGAAAGCGAAGCGACCGCGGTCGCCA
AGGCAGAGTTCGAGGCCGAGGAAGAGTTGCGGCGTATGCGGCTGCGGGTA
ACTGGGTCCATGACCGCGGAGAAAGATGAGCTCGCGCAACAGCAGCAGCA
ACAGCAGCAA

Synonyms

Publications